Nitrogen fuelling of the pelagic food web of the Tropical Atlantic

We estimated the relative contribution of atmospheric Nitrogen (N) input (wet and dry deposition and N fixation) to the epipelagic food web by measuring N isotopes of different functional groups of epipelagic zooplankton along 23°W (17°N-4°S) and 18°N (20-24°W) in the Eastern Tropical Atlantic. Results were related to water column observations of nutrient distribution and vertical diffusive flux as well as colony abundance of Trichodesmium obtained with an Underwater Vision Profiler (UVP5). The thickness and depth of the nitracline and phosphocline proved to be significant predictors of zooplankton stable N isotope values. Atmospheric N input was highest (61% of total N) in the strongly stratified and oligotrophic region between 3 and 7°N, which featured very high depth-integrated Trichodesmium abundance (up to 9.4×104 colonies m-2), strong thermohaline stratification and low zooplankton delta15N (~2 per mil). Relative atmospheric N input was lowest south of the equatorial upwelling between 3 and 5°S (27%). Values in the Guinea Dome region and north of Cape Verde ranged between 45 and 50%, respectively. The microstructure-derived estimate of the vertical diffusive N flux in the equatorial region was about one order of magnitude higher than in any other area (approximately 8 mmol m-2 d 1). At the same time, this region received considerable atmospheric N input (35% of total). In general, zooplankton delta15N and Trichodesmium abundance were closely correlated, indicating that N fixation is the major source of atmospheric N input. Although Trichodesmium is not the only N fixing organism, its abundance can be used with high confidence to estimate the relative atmospheric N input in the tropical Atlantic (r2 = 0.95). Estimates of absolute N fixation rates are two- to tenfold higher than incubation-derived rates reported for the same regions. Our approach integrates over large spatial and temporal scales and also quantifies fixed N released as dissolved inorganic and organic N. In a global analysis, it may thus help to close the gap in oceanic N budgets.

Instabilities induced by variation of Brunt-Vaisala frequency in compressible stratified shear flows

The stability characteristics of a Helmholtz velocity profile in a stably stratified, compressible fluid in the presence of a lower rigid boundary are studied. A jump in the Brunt-Vaisala frequency at a level different from the shear zone is introduced and the variation of the Brunt-Vaisala frequency with respect to the vertical coordinate in the middle layer of the three-layered model is considered. An analytic solution in each of the layers is obtained, and the dispersion relation is solved numerically for parameters relevant to the model. The effect of shear in the lowermost layer of the three-layered model for a Boussinesq fluid is discussed. The results are compared with the earlier studies of Lindzen and Rosenthal, and Sachdev and Satya Narayanan. In the present model, new unstable modes with larger growth rates are obtained and the most unstable gravity wave modes are found to agree closely with the observed ones at various heights. Physics of Fluids is copyrighted by The American Institute of Physics.

Dynamik orographischer Bannerwolken

Der Begriff "Bannerwolke" bezeichnet ein eindrucksvolles Phänomen aus dem Bereich der Gebirgsmeteorologie. Bannerwolken können gelegentlich im Hochgebirge im Bereich steiler Bergspitzen oder langgezogener Bergrücken, wie z.B. dem Matterhorn in den Schweizer Alpen oder dem Zugspitzgrat in den Bayrischen Alpen beobachtet werden. Der Begriff bezeichnet eine Banner- oder Fahnen-ähnliche Wolkenstruktur, welche an der windabgewandten Seite des Berges befestigt zu sein scheint, während die windzugewandte Seite vollkommen wolkenfrei ist. Bannerwolken fanden bislang, trotz ihres relativ häufigen Auftretens in der wissenschaftlichen Literatur kaum Beachtung. Entsprechend wenig ist über ihren Entstehungsmechanismus und insbesondere die relative Bedeutung dynamischer gegenüber thermodynamischer Prozesse bekannt. In der wissenschaftlichen Literatur wurden bislang 3 unterschiedliche Mechanismen postuliert, um die Entstehung von Bannerwolken zu erklären. Demnach entstehen Bannerwolken durch (a) den Bernoulli-Effekt, insbesondere durch die lokale adiabatische Kühlung hervorgerufen durch eine Druckabnahme entlang quasi-horizontal verlaufender, auf der windzugewandten Seite startender Trajektorien, (b) durch isobare Mischung bodennaher kälterer Luft mit wärmerer Luft aus höheren Schichten, oder (c) durch erzwungene Hebung im aufsteigenden Ast eines Leerotors. Ziel dieser Arbeit ist es, ein besseres physikalisches Verständnis für das Phänomen der Bannerwolke zu entwickeln. Das Hauptaugenmerk liegt auf dem dominierenden Entstehungsmechanismus, der relativen Bedeutung dynamischer und thermodynamischer Prozesse, sowie der Frage nach geeigneten meteorologischen Bedingungen. Zu diesem Zweck wurde ein neues Grobstruktursimulations (LES)-Modell entwickelt, welches geeignet ist turbulente, feuchte Strömungen in komplexem Terrain zu untersuchen. Das Modell baut auf einem bereits existierenden mesoskaligen (RANS) Modell auf. Im Rahmen dieser Arbeit wurde das neue Modell ausführlich gegen numerische Referenzlösungen und Windkanal-Daten verglichen. Die wesentlichen Ergebnisse werden diskutiert, um die Anwendbarkeit des Modells auf die vorliegende wissenschaftliche Fragestellung zu überprüfen und zu verdeutlichen. Die Strömung über eine idealisierte pyramidenförmige Bergspitze wurde für Froude-Zahlen Fr >> 1 sowohl auf Labor- als auch atmosphärischer Skala mit und ohne Berücksichtigung der Feuchtephysik untersucht. Die Simulationen zeigen, dass Bannerwolken ein primär dynamisches Phänomen darstellen. Sie entstehen im Lee steiler Bergspitzen durch dynamisch erzwungene Hebung. Die Simulationen bestätigen somit die Leerotor-Theorie. Aufgrund des stark asymmetrischen, Hindernis-induzierten Strömungsfeldes können Bannerwolken sogar im Falle horizontal homogener Anfangsbedingungen hinsichtlich Feuchte und Temperatur entstehen. Dies führte zu der neuen Erkenntnis, dass zusätzliche leeseitige Feuchtequellen, unterschiedliche Luftmassen in Luv und Lee, oder Strahlungseffekte keine notwendige Voraussetzung für die Entstehung einer Bannerwolke darstellen. Die Wahrscheinlichkeit der Bannerwolkenbildung steigt mit zunehmender Höhe und Steilheit des pyramidenförmigen Hindernisses und ist in erster Näherung unabhängig von dessen Orientierung zur Anströmung. Simulationen mit und ohne Berücksichtigung der Feuchtephysik machen deutlich, dass thermodynamische Prozesse (insbes. die Umsetzung latenter Wärme) für die Dynamik prototypischer (nicht-konvektiver) Bannerwolken zweitrangig ist. Die Verstärkung des aufsteigenden Astes im Lee und die resultierende Wolkenbildung, hervorgerufen durch die Freisetzung latenter Wärme, sind nahezu vernachlässigbar. Die Feuchtephysik induziert jedoch eine Dipol-ähnliche Struktur im Vertikalprofil der Brunt-Väisälä Frequenz, was zu einem moderaten Anstieg der leeseitigen Turbulenz führt. Es wird gezeigt, dass Gebirgswellen kein entscheidendes Ingredienz darstellen, um die Dynamik von Bannerwolken zu verstehen. Durch eine Verstärkung der Absinkbewegung im Lee, haben Gebirgswellen lediglich die Tendenz die horizontale Ausdehnung von Bannerwolken zu reduzieren. Bezüglich geeigneter meteorologischer Bedingungen zeigen die Simulationen, dass unter horizontal homogenen Anfangsbedingungen die äquivalentpotentielle Temperatur in der Anströmung mit der Höhe abnehmen muss. Es werden 3 notwendige und hinreichende Kriterien, basierend auf dynamischen und thermodynamischen Variablen vorgestellt, welche einen weiteren Einblick in geeignete meteorologische Bedingungen geben.

Environmental context of selected samples from the Tara Oceans Expedition (2009-2013)

The present data set provides contextual environmental data for samples from the Tara Oceans Expedition (2009-2013) that were selected for publication in a special issue of the SCIENCE journal (see related references below). The data set provides calculated averages of mesaurements made at the sampling location and depth, calculated averages from climatologies (AMODIS, VGPM) and satellite products.

Registry of all samples from the Tara Oceans Expedition (2009-2013)

The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. Data sets in this collection provide methodological and environmental context to all samples collected during the Tara Oceans Expedition (2009-2013).

Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about depth specific features

The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides environmental context to all samples from the Tara Oceans Expedition (2009-2013), including calculated averages of mesaurements made concurrently at the sampling location and depth, and calculated averages from climatologies (AMODIS, VGPM) and satellite products.

(Table 1) Conditions of vertical near-bottom profiling and the main parameters of the benthic boundary layer in several regions of the Black Sea shelf

Measurements of 14 vertical profiles of currents and hydrological parameters in the near-bottom layer with depth resolution of 0.1 m were carried out in several regions of the Black Sea shelf, at five points over the continental slope, and in three deep water regions. The upper boundary of the benthic boundary layer (BBL) was reliably determined at a point at distance from 5-7 to 35-40 m from the bottom where the gradients of density and current velocity changed. Experimental data obtained were used to determine the coefficient of bottom friction, friction velocity, coefficients of vertical diffusion of momentum and density, and vertical fluxes of temperature and salinity in the BBL.

Environmental context of all samples from the Tara Oceans Expedition (2009-2013), about water column features

The Tara Oceans Expedition (2009-2013) sampled the world oceans on board a 36 m long schooner, collecting environmental data and organisms from viruses to planktonic metazoans for later analyses using modern sequencing and state-of-the-art imaging technologies. Tara Oceans Data are particularly suited to study the genetic, morphological and functional diversity of plankton. The present data set provides environmental context to all samples from the Tara Oceans Expedition (2009-2013), about water column features at the sampling location. Based on in situ measurements of... at the...

On the stability and spatiotemporal variance distribution of salinity in the upper ocean

Despite recent advances in ocean observing arrays and satellite sensors, there remains great uncertainty in the large-scale spatial variations of upper ocean salinity on the interannual to decadal timescales. Consonant with both broad-scale surface warming and the amplification of the global hydrological cycle, observed global multidecadal salinity changes typically have focussed on the linear response to anthropogenic forcing but not on salinity variations due to changes in the static stability and or variability due to the intrinsic ocean or internal climate processes. Here, we examine the static stability and spatiotemporal variability of upper ocean salinity across a hierarchy of models and reanalyses. In particular, we partition the variance into time bands via application of singular spectral analysis, considering sea surface salinity (SSS), the Brunt Väisälä frequency (N2), and the ocean salinity stratification in terms of the stabilizing effect due to the haline part of N2 over the upper 500m. We identify regions of significant coherent SSS variability, either intrinsic to the ocean or in response to the interannually varying atmosphere. Based on consistency across models (CMIP5 and forced experiments) and reanalyses, we identify the stabilizing role of salinity in the tropics—typically associated with heavy precipitation and barrier layer formation, and the role of salinity in destabilizing upper ocean stratification in the subtropical regions where large-scale density compensation typically occurs.

Derivation of lake mixing and stratification indices from high-resolution lake buoy data

Lake Analyzer is a numerical code coupled with supporting visualization tools for determining indices of mixing and stratification that are critical to the biogeochemical cycles of lakes and reservoirs. Stability indices, including Lake Number, Wedderburn Number, Schmidt Stability, and thermocline depth are calculated according to established literature definitions and returned to the user in a time series format. The program was created for the analysis of high-frequency data collected from instrumented lake buoys, in support of the emerging field of aquatic sensor network science. Available outputs for the Lake Analyzer program are: water temperature (error-checked and/or down-sampled), wind speed (error-checked and/or down-sampled), metalimnion extent (top and bottom), thermocline depth, friction velocity, Lake Number, Wedderburn Number, Schmidt Stability, mode-1 vertical seiche period, and Brunt-Väisälä buoyancy frequency. Secondary outputs for several of these indices delineate the parent thermocline depth (seasonal thermocline) from the shallower secondary or diurnal thermocline. Lake Analyzer provides a program suite and best practices for the comparison of mixing and stratification indices in lakes across gradients of climate, hydro-physiography, and time, and enables a more detailed understanding of the resulting biogeochemical transformations at different spatial and temporal scales.