Development of herbicide-tolerant irrigated rice cultivars

The objective of this work was to develop new irrigated rice lines tolerant to imidazolinone herbicides. The backcross breeding procedure was used to transfer the imidazolinone tolerance allele from mutant 93AS3510 to the recurrent parents 'BRS 7 Taim' and 'BRS Pelota'. Individual herbicide-tolerant plants were selected in each generation, for three backcrossings (RC1 to RC3), followed by three selfing generations (RC3F1 to RC3F3). The best four RC3F3 lines for agronomic traits were genotyped with 44 microsatellite markers. The observed conversion index of the new imidazolinone-tolerant lines varied from 91.86 to 97.67%. Pairwise genetic distance analysis between these lines and 22 accessions from the Embrapa's Rice Germplasm Bank clustered the new lines with their respective recurrent parents, but not with 'IRGA 417', which was originally used as recurrent parent to derive IRGA 422 CL, the only imidazolinone-tolerant irrigated rice cultivar recommended for cultivation in Brazil. Therefore, these lines represent new options of genetically diverse imidazolinone-tolerant rice accessions. Lines CNA10756 ('BRS Sinuelo CL') and CNA10757 will be released for cultivation in the Clearfield irrigated rice production system in Rio Grande do Sul, Brazil.

Outcrossing rate between 'Haden' and 'Tommy Atkins' mangoes estimated using microsatellite and AFLP markers

The objective of this work was to estimate outcrossing rates between Haden and Tommy Atkins mango cultivars, using AFLP and microsatellite markers. Progenies of an isolated 'Haden' plant, identified in a 'Tommy Atkins' commercial orchard, in Petrolina, PE, Brazil, were analyzed. Total DNA was isolated from the progeny leaves and used for AFLP and microsatellite reactions. Multilocus outcrossing rates (t m) were estimated by direct count of AFLP or microsatellite markers and by the mLTR software. Outcrossing rates ranged from 0.85 to 0.87 with the analysis based on seven AFLP markers, and from 0.83 to 0.91 based on three microsatellite primers. No unexpected band patterns were observed for 'Haden' and 'Tommy Atkins'. The estimates obtained with the mLTR software were close to those obtained by direct AFLP and microsatellite allele counting, which indicates that the multilocus model was appropriate for this kind of study. The microsatellites mMiCIR005, mMiCIR030, and mMiCIR036 can be used to elucidate the origin of 'Haden' and 'Tommy Atkins' seedlings.

Candidate SNPs for carcass and meat traits in Nelore animals and in their crosses with Bos taurus

The objective of this work was to evaluate the effects of single-nucleotide polymorphisms (SNPs) in the genes IGF1 (AF_017143.1:g.198C>T), MSTN (AF_320998.1:g.433C>A), MYOD1 (NC_007313:g.1274A>G) and MYF5 (NC_007303:g.1911A>G) on carcass and meat traits in Nelore (Bos indicus) and Nelore x B. taurus. A total of 300 animals were genotyped and phenotyped for rib eye area (REA), backfat thickness (BT), intramuscular fat (IF), shear force (SF) and myofibrillar fragmentation index (MFI). The effects of allele substitution for each SNP were estimated by regression of the evaluated phenotypes on the number of copies of a particular allele using the general linear model. The polymorphism at IGF1 was non-informative in Nelore animals. In crossbred animals, the IGF1 C allele was associated with greater REA. However, this relation was not significant after Bonferroni correction for multiple testing. The A allele of the MSTN polymorphism was absent in Nelore cattle and was only found in two crossbred animals. The polymorphisms of MYOD1 and MYF5 were little informative in Nelore animals with G allele frequency of 0.097 and A allele frequency of 0.031, respectively. These markers show no association with the analyzed traits in the total sample of evaluated animals.

Densidade de plantas em híbridos de milho semeados no final do inverno em ambientes irrigados e de sequeiro

O objetivo deste trabalho foi avaliar a densidade de plantas de híbridos de milho semeados antecipadamente (agosto e setembro), durante o final do inverno no Sul do Brasil, em ambientes irrigados e de sequeiro. Implantaram-se dois experimentos em 2008/2009 (um irrigado durante todo o ciclo e outro apenas de V15 a R2) e três em 2009/2010 (além dos níveis anteriores, acrescentou-se um sob condições naturais de precipitação). Em cada experimento, avaliaram-se quatro densidades (5, 7, 9 e 11 plantas por metro quadrado), quatro híbridos em 2008/2009 e três híbridos em 2009/2010. Em 2008/2009, ocorreram períodos de deficiência hídrica que totalizaram 84 mm nos estádios V3, V11 a V15, e R4. Em 2009/2010, ocorreu deficiência hídrica apenas no estádio R5. Nos dois anos, as máximas produtividades de grãos ultrapassaram 13 Mg ha‑1 e foram obtidas com densidades superiores a nove plantas por metro quadrado, independentemente da disponibilidade hídrica e do híbrido. A utilização de altas densidades é uma estratégia eficiente para otimizar a produtividade de grãos do milho semeado no final do inverno nas regiões mais quentes do Sul do Brasil, desde que não haja deficiência hídrica entre V15 e R2.

Genetic variability of rice recurrent selection populations as affected by male sterility or manual recombination

The objective of this work was to determine the effect of male sterility or manual recombination on genetic variability of rice recurrent selection populations. The populations CNA-IRAT 4, with a gene for male sterility, and CNA 12, which was manually recombined, were evaluated. Genetic variability among selection cycles was estimated using14 simple sequence repeat (SSR) markers. A total of 926 plants were analyzed, including ten genitors and 180 individuals from each of the evaluated cycles (1, 2 and 5) of the population CNA-IRAT 4, and 16 genitors and 180 individuals from each of the cycles (1 and 2) of CNA 12. The analysis allowed the identification of alleles not present among the genitors for both populations, in all cycles, especially for the CNA-IRAT 4 population. These alleles resulted from unwanted fertilization with genotypes that were not originally part of the populations. The parameters of Wright's F-statistic (F IS and F IT) indicated that the manual recombination expands the genetic variability of the CNA 12 population, whereas male sterility reduces the one of CNA-IRAT 4.

Genetic diversity of sweet sorghum germplasm in Mexico using AFLP and SSR markers

The objective of this work was to evaluate the diversity and genetic relationships between lines and varieties of the sweet sorghum (Sorghum bicolor) germplasm bank of the National Institute for Forestry, Agriculture and Livestock Research, Mexico, using AFLP and SSR markers. The molecular markers revealed robust amplification profiles and were able to differentiate the 41 genotypes of sweet sorghum evaluated. Analysis of the frequency and distribution of polymorphic fragments allowed for the detection of unique (AFLP) and rare (SSR) alleles in several genotypes (RBSS‑8, RBSS‑9, RBSS‑25, RBSS‑32, and RBSS‑37), indicating that these markers may be associated with a feature that has not yet been determined or may be useful for the identification of these genotypes. The genetic relationships indicated the presence of at least two types of sweet sorghum: a group of modern genotypes used for sugar and biofuel production, and another group consisting of historic and modern genotypes used for the production of syrups. Sweet sorghum genotypes may be used to develop new varieties with higher sugar and juice contents.

Relações empíricas entre características dendrométricas da Caatinga brasileira e dados TM Landsat 5

O objetivo deste trabalho foi ajustar modelos para estimar características dendrométricas da Caatinga brasileira a partir de dados do sensor TM do Landsat 5. Medidas de diâmetro e altura das árvores foram obtidas de 60 parcelas de inventário (400 m2), em dois municípios do Estado de Sergipe. A área basal e o volume de madeira foram estimados com uso de equação alométrica e de fator de forma (f = 0,9). As variáveis explicativas foram obtidas do sensor TM, após correção radiométrica e geométrica, tendo-se considerado, na análise, seis bandas espectrais, com resolução espacial de 30 m, além dos índices de razão simples (SR), de vegetação por diferença normalizada (NDVI) e de vegetação ajustado ao solo (Savi). Na escolha das melhores variáveis explicativas, foram considerados coeficiente de determinação (R2), raiz do erro quadrático médio (RMSE) e critério bayesiano de informação (CBI). A área basal por hectare não apresentou correlação significativa com nenhuma das variáveis explicativas utilizadas. Os melhores modelos foram ajustados à altura média das árvores por parcela (R2 = 0,4; RMSE = 13%) e ao volume de madeira por hectare (R2 = 0,6; RMSE = 42%). As métricas derivadas do sensor TM do Landsat 5 têm grande potencial para explicar variações de altura média das árvores e do volume de madeira por hectare, em remanescentes de Caatinga situados no Nordeste brasileiro.

Polymorphisms in candidate genes and their association with carcass traits and meat quality in Nellore cattle

The objective of this work was to estimate the allele polymorphism frequencies of genes in Nellore cattle and associate them with meat quality and carcass traits. Six hundred males were genotyped for the following polymorphisms: DGAT1 (VNTR with 18 nucleotides at the promoter region); ANK1, a new polymorphism, identified and mapped here at the gene regulatory region NW_001494427.3; TCAP (AY428575.1:g.346G>A); and MYOG (NW_001501985:g.511G>C). In the association study, phenotype data of hot carcass weight, ribeye area, backfat thickness, percentage of intramuscular fat, shear force, myofibrillar fragmentation index, meat color (L*, a*, b*), and cooking losses were used. Allele B from the ANK1 gene was associated with greater redness (a*). Alleles 5R, 6R, and 7R from the DGAT1 VNTR gene were associated with increased intramuscular fat, reduced cooking losses and increased ribeye area, respectively. The single nucleotide polymorphism (SNP) of the TCAP gene was not polymorphic, and MYOG alleles were not associated with any of the evaluated characteristics. These results indicate that ANK1 and DGAT1 genes can be used in the selection of Nellore cattle for carcass and meat quality.

Coeficiente de erodibilidade em sulcos e entressulcosde Argissolos coesos estimado pela cor do solo

O objetivo deste trabalho foi estimar o coeficiente de erodibilidade em sulcos e entressulcos, por meio de parâmetros da cor do solo. Foram selecionadas três áreas cultivadas com soja, em Argissolos Amarelos coesos do Leste Maranhense. Em cada área, foram retiradas 121 amostras na profundidade de 0,00-0,20 m. Foram determinados os valores de espectroscopia de reflectância difusa na faixa do visível, para obtenção dos valores de matiz, valor e croma. A partir destes constituintes da cor, foi calculado o índice de avermelhamento para cada amostra. Foram desenvolvidos modelos para avaliar o efeito de cada componente da cor sobre a erodibilidade em sulcos e entressulcos. Esses componentes apresentaram R2 que variou de 0,37 a 0,70. Os modelos gerados obtiveram R2 de 0,70 e 0,73, para entressulcos e sulcos, respectivamente. A cor do solo determinada por espectroscopia de reflectância difusa pode ser utilizada como método alternativo para estimar o coeficiente de erodibilidade de Argissolos Amarelos coesos.

Correlações do índice de área do cladódio com características morfogênicas e produtivas da palma forrageira

O objetivo deste trabalho foi avaliar as correlações do índice de área do cladódio com características morfogênicas e produtivas da palma forrageira (Nopalea sp. e Opuntia sp.). Foram avaliados três clones de palma forrageira, em condições de sequeiro: IPA Sertânia, Miúda e Orelha de Elefante Mexicana. Dados morfológicos dos cladódios e da planta, índice de área do cladódio e biomassa acumulada foram obtidos na ocasião da colheita. A relação entre os dados coletados foi avaliada por meio da análise de trilha, após a aplicação da matriz de correlação de Pearson e do teste de multicolinearidade. Foram observadas maiores correlações das características morfogênicas com o rendimento da cultura do que com o índice de área do cladódio, com R2 entre 0,5930 e 0,9502. As variáveis altura x largura e número total de cladódios foram as que melhor explicaram a variação do índice de área do cladódio. O número total de cladódios, o índice de área do cladódio e a morfologia dos cladódios de quarta ordem são as variáveis que melhor explicam a variabilidade do rendimento dos clones de palma forrageira avaliados em ambiente semiárido.

Protein contamination on Klason lignin contents in tropical grasses and legumes

The objective of this work was to evaluate the extent of protein contamination on Klason lignin (KL) in tropical grasses and legumes, and to propose an equation to estimate the protein-free content of Klason lignin (KLp). Five grass (30 samples) and 12 legume species (31 samples) were evaluated. Legumes had higher KL contents. Protein contamination was significant in both grasses and legumes, but greater in legume samples. The model to predict KLp was based on KL and crude protein (CP) contents, as follows: KLp = 0.8807KL - 0.0938KL x D - 0.00338CP (R2=0.935), in which D=0, for grasses, and D=1 for legumes.

Development of a diagrammatic scale for the evaluation of postharvest physiological deterioration in cassava roots

Abstract:The objective of this work was to develop a scale to assess the severity of postharvest physiological deterioration (PPD) of cassava roots, and to validate this scale for accuracy and reproducibility estimates. A diagrammatic scale (0 to 100%) for the damaged roots was analyzed according to precision, accuracy, and reproducibility. Seven evaluators (four with experience and three without it) quantified the PPD severity, with or without the scale, considering 150 roots with different levels of PPD. Without and with the use of the scale, respectively, the inexperienced evaluators obtained coefficients of determination (R2) from 0.76 to 0.86 and 0.87 to 0.92, and the experienced evaluators obtained R2 from 0.90 to 0.96 and 0.96 to 0.97. The values of the intercept (a) obtained by both the experienced and inexperienced evaluators who did not use the scale were all significant, while after using the scale, only two evaluators got values that were not significantly different from one. Evaluation reproducibility between the evaluators ranged from 0.61 to 0.91 for the inexperienced ones and from 0.83 to 0.95 for the experienced ones. The proposed diagrammatic scale was considered appropriate to estimate the severity of PPD in cassava roots, and can be used to identify sources of tolerance to postharvest deterioration.

Frequencies of candidate genes and associations with carcass and meat traits in Nellore and crossbred cattle

Abstract: The objective of this work was to estimate allelic frequencies of the polymorphisms IGF2/MboII (G > T) of the insulin-like growth factor 2 (IGF2) gene, DQ499531.1:g.134A > T of the pro-melanin-concentrating hormone (PMCH) gene, and DQ667048.1:g.3290G > T of the RARrelated orphan receptor C (RORC) gene in beef cattle of different genetic groups, and to evaluate the associations between these polymorphisms and traits related to carcass composition and meat quality. Data on carcass and meat quality of 499 animals was used: of 313 Nellore (Bos indicus) and of 186 Nellore crossed with different taurine (Bos taurus) breeds. For the IGF2/MboII polymorphism, the frequencies found for the G allele were 0.231 and 0.631 for Nellore and crossed breeds, respectively. For the DQ499531.1:g.134A > T polymorphism, the allelic frequencies of A were 0.850 for Nellore and 0.905 for crossed breeds. For the DQ667048.1:g.3290G > T polymorphism, the allelic frequencies of G were 0.797 and 0.460 for Nellore and crossed breeds, respectively. The evaluated single nucleotide polymorphisms (SNPs) are not significantly associated with carcass and meat traits (rib eye area, back fat thickness, shear force, total lipids, and myofibrillar fragmentation index), suggesting little utility of the analyzed polymorphisms of the IGF2, PMHC, and RORC genes as selection markers in the studied cattle populations.