Aplicação da análise de agrupamento de dados de expressão gênica temporal a dados em painel

O objetivo deste trabalho foi determinar a melhor alternativa, entre os métodos de agrupamento hierárquico (Ward) e de otimização (Tocher), para a formação de grupos homogêneos de séries de expressão gênica, e realizar previsões quanto à expressão gênica dessas séries, a partir de pequeno número de observações temporais. Os dados utilizados referem-se à expressão de genes que atuam sobre o ciclo celular de Saccharomyces cerevisiae e corresponderam a 114 séries de expressão gênica, cada uma com dez valores de "fold-change" (medida da expressão gênica) ao longo do tempo (0, 15, 30, 45, 60, 75, 90, 105, 120 e 135 min). As estimativas dos parâmetros dos modelos autorregressivos AR(p) foram previamente ajustadas a séries individuais (de cada gene) de dados "microarray time series" e utilizadas, como variáveis, no processo de agrupamento. As previsões da expressão gênica foram feitas dentro de cada grupo formado, a partir dos ajustes no modelo AR(p) para dados em painel. O método de Ward foi o mais apropriado para a formação de grupos de genes com séries homogêneas. Uma vez obtidos esses grupos, é possível ajustar o modelo AR(2) para dados em painel e predizer a expressão gênica em um tempo futuro (135 min), a partir de um pequeno número de observações temporais (os outros nove valores de "fold-change").

Crescimento, digestibilidade e resistência à infecção por patógeno em tilápia-do-nilo alimentada com probióticos

O objetivo deste trabalho foi avaliar o efeito da suplementação da dieta com os probióticos Lactobacillus plantarum e Saccharomyces cerevisiae, no desempenho zootécnico, digestibilidade e na resistência à infecção por patógeno, em alevinos de tilápia-do-nilo. Foram realizados três ensaios. No primeiro, durante 55 dias, seis grupos de 30 alevinos (2,4±0,5 g) receberam suplementação com probióticos, e outros três grupos não receberam suplementação. No final desse período, no segundo ensaio, os peixes foram desafiados com Aeromonas hydrophila, e a sobrevivência foi avaliada por 96 horas. No terceiro ensaio, com oito peixes por tanque (230,0±10,0 g), avaliou-se a digestibilidade da dieta após a suplementação com os probióticos. A suplementação probiótica melhora significativamente o ganho de peso, a conversão alimentar, as taxas de retenção proteica e energética, assim como a resistência dos animais a Aeromonas hydrophila, após a infecção. A suplementação com Saccharomyces cerevisiae à dieta de tilápia-do-nilo melhora significativamente a digestibilidade da proteína, energia e matéria seca.

Estudo da fermentação alcoólica de soluções diluídas de diferentes açucares utilizando microcalorimetria de fluxo

The present study shows that with liquid nitrogen stored inocula of Saccharomyces cerevisiae, and standardized experimental procedure, flow microcalorimetry can be a valuable tool for monitoring in real time the alcoholic fermentation processes on line. The avaliation of cultural conditions contained different carbon sources for alcohol fermentation (sucrose, glucose, fructose, manose, maltose, galactose, molasses, honey and sugar cane) and their effects on the heat output recording is discussed. Some examples of diauxic growth is given, where the microcalorimeters serves to detect the temporal order of succession of alternating metabolic pathways.

Preparação e caracterização do vinho de laranja

A simple method of home made preparation and physical-chemical characterization of orange wine was investigated. Saccharomyces cerevisiae was used as inoculum for wine-making by fermentation. Chemical compositions related to the aroma components seems to be very similar between grape and orange wines.

Validação lateral em relações quantitativas entre estrutura e atividade farmacológica, QSAR

The comparative QSAR is a tool for validating any statistical model that seems to be reasonable in describing an interaction between a bioactive new chemical entity, BIONCE, and the biological system. In order to deeper the understanding of the relationships and the meaning of parameters within the model it is necessary some kind of lateral validation. This validation can be accomplished by chemical procedures using physicochemical organic reactions and by means of biological systems. In this paper we review some of such comparisons and also present a lateral validation between the same set of antimicrobial hydrazides acting against Saccharomyces cerevisiae yeast and Escherichia coli bacterium cells. QSARs are presented to shed light in this important way of stating that the QSAR model is not the endpoint, but the beginning.

Enhanced triterpene production in Tabernaemontana catharinensis cell suspension cultures in response to biotic elicitors

Cell suspension cultures of Tabernaemontana catharinensis were treated with autoclaved homogenates of Candida albicans, Fusarium oxysporum, Penicillium avelanium and Saccharomyces cerevisiae. The effects caused by the concentration, exposure time and the type of elicitor on the accumulation of pentacyclic triterpenes were monitored. When exposed to biotic elicitors for longer periods, some cell lines redoubled the production of those triterpenes. Saccharomyces cerevisiae homogenate was the best elicitor of triterpenes in all cell lines investigated.

In vitro antimicrobial and antioxidant activities of a crude extract and fractions from Buddleja thyrsoides Lam. Leaves

Crude extract and fractions of Buddleja thyrsoides were investigated regarding antioxidant activities by DPPH, total phenolic contents by Folin-Ciocalteau and antimicrobial activity by the broth microdilution method. Total phenolics varied from 214.07 ± 3.6 to 438.4 ± 0.3 mg g-1. Crude extract, ethyl acetate, dichloromethane and butanolic fractions exhibited a weak scavenging activity (SC50=186.04 ± 10.8, 137.70 ± 8.5, 146.89 ± 9.0 and 165.71 ± 3.2 µg mL-1, respectively). A correlation between the antioxidant activities and total phenolic contents could be shown (r=0.857, p<0.01). The lowest value of MIC was observed with butanolic fraction against Saccharomyces cerevisiae (MIC and MFC at 62.5 µg mL-1). Dichloromethane and ethyl acetate fractions were effective against Staphylococcus aureus with MIC value at 250 and 500 µg mL-1 respectively.

Efeito de indutores bióticos e abióticos na atividade de quitinase e peroxidase e no controle da ferrugem causada por Puccinia psidii em eucalipto

Verificou-se o efeito de indutores de resistência bióticos e abióticos nas atividades de quitinase e peroxidase e na redução da severidade da ferrugem do eucalipto causada por Puccinia psidii. Para isso, mudas de dois clones de eucalipto (Eucalyptus grandis x E. urophylla) denominados VR e C0, com sessenta dias de idade, mantidas em casa de vegetação, receberam tratamentos com Bion® (Acibenzolar-S-metil-ASM), Agro-Mos®, Dipel®, Ecolife40®, Crop-set® e uma preparação obtida a partir de Saccharomyces cerevisiae, 5 dias antes da inoculação com o patógeno. Uma suspensão de uredósporos de P. psidii, coletados a partir de plantas naturalmente infectadas, foi calibrada para 5 x 10(4) uredósporos/ mL. A inoculação foi realizada na face abaxial das folhas e a avaliação se deu 15 dias após, estimando-se a severidade da doença por meio de escala de notas. Os tratamentos ASM, preparado de S. cerevisiae e Ecolife® apresentaram os melhores resultados de controle da doença e os demais tratamentos não se mostraram eficazes para o controle. O aumento de atividade das enzimas quitinase e peroxidase foi observado em ambos os clones, previamente tratados com os indutores(ASM e S. cerevisiae), 48 horas após a inoculação com o fungo.

Nematicidal effect of volatile organic compounds (VOCs) on the plant-parasitic nematode Meloidogyne javanica

Previous studies have demonstrated that volatile organic compounds (VOCs), produced by the yeast Saccharomyces cerevisiae, were able to inhibit the development of phytopathogenic fungi. In this context, the nematicidal potential of the synthetic mixture of VOCs, constituted of alcohols and esters, was evaluated for the control of the root-knot nematode Meloidogyne javanica, which causes losses to crops of high economic value. The fumigation of substrate containing second-stage juveniles with VOCs exhibited nematicidal effect higher than 30% for the lowest concentration tested (33.3 µL g-1 substrate), whereas at 66.6 and 133.3 µL g-1 substrate, the nematode mortality was 100%. The present results stimulate other studies on VOCs for nematode management.

Extração e caracterização de hemiceluloses de Pinus radiata e sua viabilidade para a produção de bioetanol

As galactoglucomananas são as principais frações de hemiceluloses presentes nas madeiras moles e contêm, principalmente, as hexoses galactose, glicose e manose. O isolamento eficiente e seletivo dessas hemiceluloses é um obstáculo crítico a superar para sua utilização. Os objetivos deste trabalho foram extrair e caracterizar soluções aquosas ácidas e neutras de hemiceluloses de cavacos de madeira de Pinus radiata, bem como avaliar sua viabilidade para a produção de bioetanol. As hemiceluloses em P. radiata representam 26 g/100 g de madeira (base seca), e as hexoses são responsáveis por aproximadamente 64% dessa quantidade. De acordo com as diferentes condições de extração, cerca de 50% da fração hemicelulósica foi solubilizada e recuperada depois de uma precipitação com etanol. As frações recuperadas de hemiceluloses estavam na forma de oligômeros com peso molecular médio (Mw) variando entre 4x10³ e 4x10(5) g/mol. Os oligômeros hemicelulósicos foram hidrolisados com ácido sulfúrico diluído e os hidrolisados concentrados até aproximadamente 70 g/L hexosas e fermentados pela levedura Saccharomyces cerevisiae. Os resultados de fermentação indicaram que os açúcares obtidos dos extratos ácidos e neutros foram fermentados com rendimentos máximos de etanol de 63% e 54% (22 g/L e 19 g/L), respectivamente. A conversão de hemiceluloses da madeira em etanol é viável, porém seu baixo rendimento faz que o processo não seja economicamente atrativo, razão por que melhorias no processo ou usos alternativos das hemiceluloses devem ser avaliados.

Production of natural aroma by yeast in wastewater of cassava starch industry

ABSTRACT2-Phenylethanol (PE) is an aromatic alcohol with a characteristic odor of roses, widely used in food industry to modify certain aroma compositions in formulations with fruit, jam, pudding, and chewing gums, and also in cosmetic and fragrance industry. This compound occurs naturally in low concentrations in some essential oils from flowers and plants. An alternative to plants extraction are biotechnological processes. This study evaluated 2-phenylethanol’s production in cultivation of Saccharomyces cerevisiae in cassava wastewater originated from starch industry. The substrate was supplemented with glucose and L-phenylalanine in order to obtain higher 2-phenylethanol concentrations and better efficiency in glucose/2-phenylethanol conversion. It was performed using Rotatable Center Composite Design and response surface analysis. Cultures were performed under aerobic conditions in a batch system in Erlenmeyer flasks containing 50 mL of medium in shaker at 150 rpm and 24 ± 1 ºC. The highest PE values ​​were obtained with supplementation of 20.0 g.L-1 of glucose and 5.5 g.L-1 of L-phenylalanine, which has been experimentally validated, obtaining a PE production of 1.33 g.L-1 and PE/glucose yield factor of 0.070 g.g-1, equivalent to 74.3 and 89.7% ​​of desirability values according to the validated model.

Detection of anthraquinones and identification of 1,4-naphthohydroquinone in cell suspension cultures of Rudgea jasminoides (Cham.) Müll. Arg. (Rubiaceae)

In Rubiaceae, anthraquinones and naphthoquinones are secondary metabolites characteristic of the subfamily Rubioideae, in which Rudgea jasminoides is included. Thin-layer chromatography using specific solvent systems and spray reagents indicated the presence of anthraquinones constitutively produced by cell suspension cultures of R. jasminoides. GC/MS analysis detected 1,4-naphthohydroquinone as a product of biosynthesis only after elicitation of the cells with yeast extract (Saccharomyces cerevisiae). The latter compound is probably a phytoalexin produced by suspension cultures of R. jasminoides.

Genetic engineering of baker's and wine yeasts using formaldehyde hyperresistance-mediating plasmids

Yeast multi-copy vectors carrying the formaldehyde-resistance marker gene SFA have proved to be a valuable tool for research on industrially used strains of Saccharomyces cerevisiae. The genetics of these strains is often poorly understood, and for various reasons it is not possible to simply subject these strains to protocols of genetic engineering that have been established for laboratory strains of S. cerevisiae. We tested our vectors and protocols using 10 randomly picked baker's and wine yeasts all of which could be transformed by a simple protocol with vectors conferring hyperresistance to formaldehyde. The application of formaldehyde as a selecting agent also offers the advantage of its biodegradation to CO2 during fermentation, i.e., the selecting agent will be consumed and therefore its removal during down-stream processing is not necessary. Thus, this vector provides an expression system which is simple to apply and inexpensive to use

Study of a region on yeast chromosome XIII that complements pet G199 mutants (COX7) and carries a new non-essential gene

The mutants of Saccharomyces cerevisiae assigned to complementation group G199 are deficient in mitochondrial respiration and lack a functional cytochrome oxidase complex. Recombinant plasmids capable of restoring respiration were cloned by transformation of mutants of this group with a yeast genomic library. Sequencing indicated that a 2.1-kb subclone encompasses the very end (last 11 amino acids) of the PET111 gene, the COX7 gene and a new gene (YMR255W) of unknown function that potentially codes for a polypeptide of 188 amino acids (about 21.5 kDa) without significant homology to any known protein. We have shown that the respiratory defect corresponding to group G199 is complemented by plasmids carrying only the COX7 gene. The gene YMR255W was inactivated by one-step gene replacement and the disrupted strain was viable and unaffected in its ability to grow in a variety of different test media such as minimal or complete media using eight distinct carbon sources at three pH values and temperatures. Inactivation of this gene also did not affect mating or sporulation

The 42-kDa coat protein of Andean potato mottle virus acts as a transcriptional activator in yeast

Interactions of viral proteins play an important role in the virus life cycle, especially in capsid assembly. Andean potato mottle comovirus (APMoV) is a plant RNA virus with a virion formed by two coat proteins (CP42 and CP22). Both APMoV coat protein open reading frames were cloned into pGBT9 and pGAD10, two-hybrid system vectors. HF7c yeast cells transformed with the p9CP42 construct grew on yeast dropout selection media lacking tryptophan and histidine. Clones also exhibited ß-galactosidase activity in both qualitative and quantitative assays. These results suggest that CP42 protein contains an amino acid motif able to activate transcription of His3 and lacZ reporter genes in Saccharomyces cerevisiae. Several deletions of the CP42 gene were cloned into the pGBT9 vector to locate the region involved in this activation. CP42 constructions lacking 12 residues from the C-terminal region and another one with 267 residues deleted from the N-terminus are still able to activate transcription of reporter genes. However, transcription activation was not observed with construction p9CP42deltaC57, which does not contain the last 57 amino acid residues. These results demonstrate that a transcription activation domain is present at the C-terminus of CP42 between residues 267 and 374.