The Trypanosoma cruzi Genome Project: Nuclear Karyotype and Gene Mapping of Clone CL Brener

By using improved pulsed field gel electrophoresis conditions, the molecular karyotype of the reference clone CL Brener selected for Trypanosoma cruzi genome project was established. A total of 20 uniform chromosomal bands ranging in size from 0.45 to 3.5 Megabase pairs (Mbp) were resolved in a single run. The weighted sum of the chromosomal bands was approximately 87 Mbp. Chromoblots were hybridized with 39 different homologous probes, 13 of which identified single chromosomes. Several markers showed linkage and four different linkage groups were identified, each comprising two markers. Densitometric analysis suggests that most of the chromosomal bands contain two or more chromosomes representing either homologous chromosomes and/or heterologous chromosomes with similar sizes

Re-mapping the molecular features of the human immunodeficiency virus type 1 and human T-cell lymphotropic virus type 1 Brazilian sequences using a bioinformatics unit established in Salvador, Bahia, Brazil, to give support to the viral epidemiology studies

The analysis of genetic data for human immunodeficiency virus type 1 (HIV-1) and human T-cell lymphotropic virus type 1 (HTLV-1) is essential to improve treatment and public health strategies as well as to select strains for vaccine programs. However, the analysis of large quantities of genetic data requires collaborative efforts in bioinformatics, computer biology, molecular biology, evolution, and medical science. The objective of this study was to review and improve the molecular epidemiology of HIV-1 and HTLV-1 viruses isolated in Brazil using bioinformatic tools available in the Laboratório Avançado de Sáude Pública (Lasp) bioinformatics unit. The analysis of HIV-1 isolates confirmed a heterogeneous distribution of the viral genotypes circulating in the country. The Brazilian HIV-1 epidemic is characterized by the presence of multiple subtypes (B, F1, C) and B/F1 recombinant virus while, on the other hand, most of the HTLV-1 sequences were classified as Transcontinental subgroup of the Cosmopolitan subtype. Despite the high variation among HIV-1 subtypes, protein glycosylation and phosphorylation domains were conserved in the pol, gag, and env genes of the Brazilian HIV-1 strains suggesting constraints in the HIV-1 evolution process. As expected, the functional protein sites were highly conservative in the HTLV-1 env gene sequences. Furthermore, the presence of these functional sites in HIV-1 and HTLV-1 strains could help in the development of vaccines that pre-empt the viral escape process.

Analysis and chromosomal mapping of Leishmania (Leishmania) amazonensis amastigote expressed sequence tags

The characterization of expressed sequence tags (ESTs) generated from a cDNA library of Leishmania (Leishmania) amazonensis amastigotes is described. The sequencing of 93 clones generated new L. (L.) amazonensis ESTs from which 32% are not related to any other sequences in database and 68% presented significant similarities to known genes. The chromosome localization of some L. (L.) amazonensis ESTs was also determined in L. (L.) amazonensis and L. (L.) major. The characterization of these ESTs is suitable for the genome physical mapping, as well as for the identification of genes encoding cysteine proteinases implicated with protective immune responses in leishmaniasis.

Mapping the molecular characteristics of Brazilian human T-cell lymphotropic virus type 1 Env (gp46) and Pol amino acid sequences for vaccine design

This study was carried out to evaluate the molecular pattern of all available Brazilian human T-cell lymphotropic virus type 1 Env (n = 15) and Pol (n = 43) nucleotide sequences via epitope prediction, physico-chemical analysis, and protein potential sites identification, giving support to the Brazilian AIDS vaccine program. In 12 previously described peptides of the Env sequences we found 12 epitopes, while in 4 peptides of the Pol sequences we found 4 epitopes. The total variation on the amino acid composition was 9 and 17% for human leukocyte antigen (HLA) class I and class II Env epitopes, respectively. After analyzing the Pol sequences, results revealed a total amino acid variation of 0.75% for HLA-I and HLA-II epitopes. In 5 of the 12 Env epitopes the physico-chemical analysis demonstrated that the mutations magnified the antigenicity profile. The potential protein domain analysis of Env sequences showed the loss of a CK-2 phosphorylation site caused by D197N mutation in one epitope, and a N-glycosylation site caused by S246Y and V247I mutations in another epitope. Besides, the analysis of selection pressure have found 8 positive selected sites (w = 9.59) using the codon-based substitution models and maximum-likelihood methods. These studies underscore the importance of this Env region for the virus fitness, for the host immune response and, therefore, for the development of vaccine candidates.

Schistosomiasis risk mapping in the state of Minas Gerais, Brazil, using a decision tree approach, remote sensing data and sociological indicators

Schistosomiasis mansoni is not just a physical disease, but is related to social and behavioural factors as well. Snails of the Biomphalaria genus are an intermediate host for Schistosoma mansoni and infect humans through water. The objective of this study is to classify the risk of schistosomiasis in the state of Minas Gerais (MG). We focus on socioeconomic and demographic features, basic sanitation features, the presence of accumulated water bodies, dense vegetation in the summer and winter seasons and related terrain characteristics. We draw on the decision tree approach to infection risk modelling and mapping. The model robustness was properly verified. The main variables that were selected by the procedure included the terrain's water accumulation capacity, temperature extremes and the Human Development Index. In addition, the model was used to generate two maps, one that included risk classification for the entire of MG and another that included classification errors. The resulting map was 62.9% accurate.

Fluência digital e uso de ambientes virtuais: caracterização de alunos de enfermagem

O objetivo do estudo foi caracterizar o perfil de licenciandos de enfermagem, identificar a fluência digital, o conhecimento, a habilidade e o interesse no uso de ambientes virtuais de aprendizagem. Trata-se de uma pesquisa quantitativa, exploratório-descritiva realizada com 51 licenciandos de enfermagem por meio de questionário. Dos participantes do estudo 51 (100%) afirmam ter conhecimento em informática, sendo que 26 (49%) indicam um nível intermediário; 47 (92%) fazem uso diário da Internet; 51 (100%) navegam em redes sociais e possuem e-mail; 51(100%) utilizam MSN e 32 (62,7%) Skype; 41 (82%) acessam Chats, 33 (64,7%) Fóruns de discussão e 22 (43%) Blogs; 33 (64,7%) utilizam frequentemente o Moodle e 26 (51%) o COL; e a grande maioria (45- 88,2%) relatou interesse no uso de ambientes virtuais de aprendizagem. Os alunos foram considerados fluentes digitais e apresentaram conhecimento, habilidade e expressivo interesse no uso de ambientes virtuais de aprendizagem em sua formação acadêmica.

Perfil, competências e fluência digital dos enfermeiros do Programa de Aprimoramento Profissional

Estudo descritivo, exploratório, realizado na cidade de São Paulo, que objetivou identificar o perfil, as competências e a fluência digital do enfermeiro aprimorando para uso da tecnologia no trabalho. A população composta por 60 aprimorandos do Programa de Aprimoramento Profissional respondeu um questionário com dados sobre o perfil, a fluência digital e as competências profissionais. Verificou-se que 95,0% dos participantes eram do sexo feminino, 61,7% na faixa etária entre 23 a 25 anos, 75,0% graduados em escolas públicas, 58,3% cursando enfermagem cardiovascular, 98,3% teve contato com recursos computacionais na graduação; 100,0% possuía computador em casa; 86,7% acessava a internet diariamente; 96,7% utilizava o Messenger e 58,3% apresentava grau intermediário de conhecimento e habilidade em informática. As competências profissionais requeridas frente à tecnologia referiram-se ao saber ser inovador, criativo, atualizado para conhecer e gerenciar programas e saber utilizar os recursos tecnológicos.

Cross Mapping Of Nursing diagnoses In Infant Health Using the International Classification of Nursing Practice

This was a descriptive, retrospective study, with a quantitative method, with the aim of analyzing the nursing diagnoses contained in the records of children of 0 to 36 months of age who attended infant health nursing consults. A documentary analysis and the cross-mapping technique were used. One hundred eighty-eight different nursing diagnoses were encountered, of which 33 (58.9%) corresponded to diagnoses contained in the Nomenclature of Nursing Diagnoses and Interventions and 23 (41.1%) were derived from ICNP® Version 1.0. Of the 56 nursing diagnoses, 43 (76.8%) were considered to be deviations from normalcy. It was concluded that the infant health nursing consults enabled the identification of situations of normalcy and abnormality, with an emphasis on the diagnoses of deviations from normalcy. Standardized language favors nursing documentation, contributing to the care of the patient and facilitating communication between nurses and other health professionals.


Mapping the nursing care with the NIC for patients in risk for pressure ulcer

Objective:To identify the nursing care prescribed for patients in risk for pressure ulcer (PU) and to compare those with the Nursing Interventions Classification (NIC) interventions. Method: Cross mapping study conducted in a university hospital. The sample was composed of 219 adult patients hospitalized in clinical and surgical units. The inclusion criteria were: score ≤ 13 in the Braden Scale and one of the nursing diagnoses, Self-Care deficit syndrome, Impaired physical mobility, Impaired tissue integrity, Impaired skin integrity, Risk for impaired skin integrity. The data were collected retrospectively in a nursing prescription system and statistically analyzed by crossed mapping. Result: It was identified 32 different nursing cares to prevent PU, mapped in 17 different NIC interventions, within them: Skin surveillance, Pressure ulcer prevention and Positioning. Conclusion: The cross mapping showed similarities between the prescribed nursing care and the NIC interventions.

Nursing care mapping for patients at risk of falls in the Nursing Interventions Classification

Objective: Identifying the prescribed nursing care for hospitalized patients at risk of falls and comparing them with the interventions of the Nursing Interventions Classifications (NIC). Method: A cross-sectional study carried out in a university hospital in southern Brazil. It was a retrospective data collection in the nursing records system. The sample consisted of 174 adult patients admitted to medical and surgical units with the Nursing Diagnosis of Risk for falls. The prescribed care were compared with the NIC interventions by the cross-mapping method. Results: The most prevalent care were the following: keeping the bed rails, guiding patients/family regarding the risks and prevention of falls, keeping the bell within reach of patients, and maintaining patients’ belongings nearby, mapped in the interventions Environmental Management: safety and Fall Prevention. Conclusion: The treatment prescribed in clinical practice was corroborated by the NIC reference.


Evaluation of digital educational studenttechnology interaction in neonatal nursing

OBJECTIVE To assess the digital educational technology interface Caring for the sensory environment in the neonatal unit: noise, lighting and handling based on ergonomic criteria. METHODS Descriptive study, in which we used the guidelines and ergonomic criteria established by ISO 9241-11 and an online Likert scale instrument to identify problems and interface qualities. The instrument was built based on Ergolist, which follows the criteria of ISO 9141-11. There were 58 undergraduate study participants from the School of Nursing of Ribeirao Preto, University of Sao Paulo, who attended the classes about neonatal nursing content. RESULTS All items were positively evaluated by more than 70% of the sample. CONCLUSION Educational technology is appropriate according to the ergonomic criteria and can be made available for teaching nursing students.

Mapping Nursing language terms of Parkinson's disease

OBJECTIVE Implementing cross-mapping of Nursing language terms with the terminology of NANDA International, contained in records of patients with Parkinson's disease in rehabilitation. METHOD Descriptive study of cross mapping, carried out in three steps. A simple random sample of 67 files of patients who participated in the rehabilitation in the period between March 2009 and April 2013. RESULTS We identified 454 terms of Nursing language that resulted in 54 diagnoses after cross-mapping, present in 11 of the 13 taxonomy domains. The most mapped diagnosis was "Impaired urinary elimination" (59.7%), followed by "Urgent urinary incontinence" (55.2%), "Willingness to self-control improved health" (50.7%), "Constipation" (47.8%) and "Compromised physical mobility" (29.9%). Seven described terms were not mapped due to a corresponding defining characteristic being absent. CONCLUSION It was possible to determine the profile of patients, as well as the complexity of nursing care in the rehabilitation of patients with Parkinson's disease.

Temporal Geobiotic Mapping: a conceptual mapping technique toward visualising geobiotic areas in cross-section

Geobiota are defined by taxic assemblages (i.e., biota) and their defining abiotic breaks, which are mapped in cross-section to reveal past and future biotic boundaries. We term this conceptual approach Temporal Geobiotic Mapping (TGM) and offer it as a conceptual approach for biogeography. TGM is based on geological cross-sectioning, which creates maps based on the distribution of biota and known abiotic factors that drive their distribution, such as climate, topography, soil chemistry and underlying geology. However, the availability of abiotic data is limited for many areas. Unlike other approaches, TGM can be used when there is minimal data available. In order to demonstrate TGM, we use the well-known area in the Blue Mountains, New South Wales (NSW), south-eastern Australia and show how surface processes such as weathering and erosion affect the future distribution of a Moist Basalt Forest taxic assemblage. Biotic areas are best represented visually as maps, which can show transgressions and regressions of biota and abiota over time. Using such maps, a biogeographer can directly compare animal and plant distributions with features in the abiotic environment and may identify significant geographical barriers or pathways that explain biotic distributions.

Análise digital do terreno: ferramenta na identificação de pedoformas em microbacia na região de "Mar de Morros" (MG)

Este trabalho reporta a utilização de ferramentas de um SIG (Sistema de Informação Geográfica) para o delineamento das geoformas e pedopaisagens em um estudo de caso em microbacia do município de Viçosa (MG), a partir dos dados da carta topográfica (escala 1:50.000) da região. Trabalhos de campo permitiram aferir uma exatidão global de 72 % na classificação das formas da paisagem e correlacionar as classes obtidas com as classes de solos dominantes. Após ajustes, elaborou-se um mapa síntese preliminar de distribuição de pedoformas, que auxilia no mapeamento de solos. O método de classificação das formas da paisagem baseado na geração de um MNT (Modelo Numérico do Terreno) e no cálculo dos atributos do relevo (elevação, declividade, curvatura) mostra-se uma alternativa rápida e econômica em comparação ao delineamento manual a partir da utilização de análise estereoscópica de fotografias aéreas.

Modelo digital de elevação na caracterização de solos desenvolvidos de basalto e material arenítico

Os levantamentos de solos são na maioria antigos e pouco detalhados, geralmente nos níveis exploratório e de reconhecimento. Isso pode ser explicado pelo fato de que o método tradicional de levantamento de solos é lento e caro, requerendo grande número de observações de campo. Assim, o presente trabalho teve como objetivo caracterizar unidades de mapeamento de solos das regiões de Ibaté e São Carlos, SP, desenvolvidos de materiais basálticos e areníticos em função da declividade e altitudes correspondentes, com base em modelo digital de elevação (MDE). Primeiramente, foi feito um mapa de solos semidetalhado pelo método tradicional. Posteriormente, utilizando-se curvas de nível da região, foi elaborado o MDE, do qual foram extraídos mapas com diferentes classes de declividade e elevação. Por meio da tabulação cruzada, foi determinada a incidência de cada solo nas respectivas classes de declives e altitudes. Cada solo apresentou comportamento diferenciado em relação às classes de declive. Contudo, nas faixas limítrofes de declividade pode ocorrer sobreposição de dois ou mais solos. Na referida região, o Latossolo Amarelo encontra-se predominantemente nas regiões mais altas e de relevo plano; entretanto, solos pouco intemperizados, como os Neossolos Litólicos, aparecem em diferentes faixas de declividade. Conclui-se que o conhecimento da distribuição dos solos no relevo é de grande importância, pois facilita a execução do levantamento de solos. O modelo de elevação apresenta semelhanças com o mapa de solos, podendo auxiliar na sua determinação. As variações de solo, no entanto, são mais complexas, não dispensando as observações de campo.