Malaria control in an agro-industrial settlement of Rondônia (Western Amazon Region, Brazil)

A malaria control pilot project was developed in the Urupá agro-industrial farm that is situated in the State of Rondônia (Western Amazon Region, Brazil). Around 180 inhabitants had been surveyed for the past five years. The control measures were based on (1) training a community agent to perform on the spot microscopical diagnosis of malaria and to treat the uncomplicated cases of malaria; (2) limiting the use of insecticides to a short period before the high transmission season. This resulted in a significant reduction in the time between the onset of clinical symptoms and specific chemotherapy which fell from 3.5 to 1.3 days. In relation to the previous three reference years the total number of malaria cases was reduced to 50% in the first year and to 25% in the second year. The introduction of these measures coincided with pronounced reduction in the frequency of Plasmodium falciparum infections but this was less marked for P. vivax infections. In the second year of the pilot experiment there was no P. falciparum transmission on the farm. During the last decade there was a general decrease in the endemicity of malaria in the State of Rondônia. The linear regression coefficient values indicate that the decline was more pronounced in Urupá than in the general municipality and that the falciparum malaria API in Urupá farm is significantly lower than in the general municipality of Candeias were the farm is situated.

Antimicrobial resistance of Enterococcus sp. isolated from the intestinal tract of patients from a university hospital in Brazil

This study reports the results about antimicrobial resistance of Enterococcus spp. isolated from intestinal tract of patients from a university hospital in Brazil. The identification of strains at species level was performed by conventional biochemical tests, API 20 Strep (bioMérieux), and polymerase chain reaction assay. The specie distribution was E. faecium (34%), followed by E. faecalis (33%), E. gallinarum (23.7%), E. casseliflavus (5.2%), E. avium (1%), and E. hirae (1%). Intrinsic resistance to vancomycin characterized by presence of vanC genes was found in E. gallinarum and E. casseliflavus. The high prevalence of VanC phenotype enterococci is very important because these species have been reported as causing a wide variety of infections. Vancomycin-resistant E. faecium or E. faecalis were not found and no one isolate of these species was a beta-lactamase producer. Thirteen clinical isolates of enterococci (13.4%) showed multiresistance patterns, which were defined by resistance to three classes of antibiotics plus resistance to at least one aminoglycoside (gentamicin and/or streptomycin). The resistance to several antimicrobials shown by enterococcal strains obtained in this study is of concern because of the decrease in the therapeutic options for treatment of infections caused by enterococci.

Comparison of methods for the identification of coagulase-negative staphylococci

Coagulase-negative staphylococci (CNS) species identification is still difficult for most clinical laboratories. The scheme proposed by Kloos and Schleifer and modified by Bannerman is the reference method used for the identification of staphylococcal species and subspecies; however, this method is relatively laborious for routine use since it requires the utilization of a large number of biochemical tests. The objective of the present study was to compare four methods, i.e., the reference method, the API Staph system (bioMérieux) and two methods modified from the reference method in our laboratory (simplified method and disk method), in the identification of 100 CNS strains. Compared to the reference method, the simplified method and disk method correctly identified 100 and 99% of the CNS species, respectively, while this rate was 84% for the API Staph system. Inaccurate identification by the API Staph method was observed for Staphylococcus epidermidis (2.2%), S. hominis (25%), S. haemolyticus (37.5%), and S. warneri (47.1%). The simplified method using the simple identification scheme proposed in the present study was found to be efficient for all strains tested, with 100% sensitivity and specificity and proved to be available alternative for the identification of staphylococci, offering, higher reliability and lower cost than the currently available commercial systems. This method would be very useful in clinical microbiology laboratory, especially in places with limited resources.

Phenotypic characterization of three clinical isolates of Burkholderia pseudomallei in Ceará, Brazil

Burkholderia pseudomallei, the causative agent of melioidosis was found in a small cluster of cases in Tejuçuoca, Ceará, Brazil. Tests were carried out to determine its phenotypic characteristics: colony morphology on Ashdown agar and MacConkey agar, biochemical profile in conventional biochemical tests and API 20NE, arabinose assimilation and susceptibility testing by disk diffusion, comparing with data in the literature. This study confirms the presence of B. pseudomallei in Brazil and describes its characteristics.

Slime production and antibiotic susceptibility in staphylococci isolated from clinical samples

A total of 187 isolates from several clinical specimens were identified to species level as 129 Staphylococcus aureus strains and 58 coagulase-negative staphylococci (CNS) strains by the API Staph System (Biomerieux). Slime production was detected both by the conventional Christensen's method as well as by the Congo red agar method. Seventy-two strains of staphylococci isolates (38.5%) were found to be slime producers by Christensen's test tube method whereas 58 strains (31%) were slime positive with Congo red agar method. There was no statistically significant difference between the two methods for the detection of slime production (P > 0.05). Susceptibility of isolates against antimicrobial agents was tested by the disk diffusion method. Staphylococcal species had resistance to one or more antibiotics. Among the various antimicrobial agents, oxacillin (71.1%) and erythromycin (47.1%) showed higher resistance than most of the agents used against all isolates. Oxacillin resistant S. aureus (ORSA) and oxacillin resistant coagulase-negative staphylococci (ORCNS), 97 (75.2%) and 36 (62.1%) respectively were frequently observed in strains isolated from clinical materials. Among the ORSA strains, two strains were resistant to vancomycin. Moreover, 96 (74.4%) of 129 S. aureus strains were positive for blactamase enzyme. However, 78 (81.25%) of 96 b-lactamase positive S. aureus strains were b-lactamase positive ORSA isolates, but none of them had vancomycin resistance.

Malaria in gold-mining areas in Colombia

Gold-mining may play an important role in the maintenance of malaria worldwide. Gold-mining, mostly illegal, has significantly expanded in Colombia during the last decade in areas with limited health care and disease prevention. We report a descriptive study that was carried out to determine the malaria prevalence in gold-mining areas of Colombia, using data from the public health surveillance system (National Health Institute) during the period 2010-2013. Gold-mining was more prevalent in the departments of Antioquia, Córdoba, Bolívar, Chocó, Nariño, Cauca, and Valle, which contributed 89.3% (270,753 cases) of the national malaria incidence from 2010-2013 and 31.6% of malaria cases were from mining areas. Mining regions, such as El Bagre, Zaragoza, and Segovia, in Antioquia, Puerto Libertador and Montelíbano, in Córdoba, and Buenaventura, in Valle del Cauca, were the most endemic areas. The annual parasite index (API) correlated with gold production (R2 0.82, p < 0.0001); for every 100 kg of gold produced, the API increased by 0.54 cases per 1,000 inhabitants. Lack of malaria control activities, together with high migration and proliferation of mosquito breeding sites, contribute to malaria in gold-mining regions. Specific control activities must be introduced to control this significant source of malaria in Colombia.

Surface mapping, organic matter and water stocks in peatlands of the Serra do Espinhaço meridional - Brazil

Peatlands are soil environments that store carbon and large amounts of water, due to their composition (90 % water), low hydraulic conductivity and a sponge-like behavior. It is estimated that peat bogs cover approximately 4.2 % of the Earth's surface and stock 28.4 % of the soil carbon of the planet. Approximately 612 000 ha of peatlands have been mapped in Brazil, but the peat bogs in the Serra do Espinhaço Meridional (SdEM) were not included. The objective of this study was to map the peat bogs of the northern part of the SdEM and estimate the organic matter pools and water volume they stock. The peat bogs were pre-identified and mapped by GIS and remote sensing techniques, using ArcGIS 9.3, ENVI 4.5 and GPS Track Maker Pro software and the maps validated in the field. Six peat bogs were mapped in detail (1:20,000 and 1:5,000) by transects spaced 100 m and each transect were determined every 20 m, the UTM (Universal Transverse Mercator) coordinates, depth and samples collected for characterization and determination of organic matter, according to the Brazilian System of Soil Classification. In the northern part of SdEM, 14,287.55 ha of peatlands were mapped, distributed over 1,180,109 ha, representing 1.2 % of the total area. These peatlands have an average volume of 170,021,845.00 m³ and stock 6,120,167 t (428.36 t ha-1) of organic matter and 142,138,262 m³ (9,948 m³ ha-1) of water. In the peat bogs of the Serra do Espinhaço Meridional, advanced stages of decomposing (sapric) organic matter predominate, followed by the intermediate stage (hemic). The vertical growth rate of the peatlands ranged between 0.04 and 0.43 mm year-1, while the carbon accumulation rate varied between 6.59 and 37.66 g m-2 year-1. The peat bogs of the SdEM contain the headwaters of important water bodies in the basins of the Jequitinhonha and San Francisco Rivers and store large amounts of organic carbon and water, which is the reason why the protection and preservation of these soil environments is such an urgent and increasing need.

Caracterização de mapas legados de solos: uso de indicadores em mapas com diferetens escalas no Rio Grande do Sul

Mapas convencionais de solos têm adquirido importância crescente como entrada para diversas aplicações, muitas vezes sem levar em conta a sua qualidade deles. O objetivo deste estudo foi descrever e comparar mapas de solos usando indicadores quantitativos de fácil determinação. Foram utilizados nove mapas elaborados em diferentes escalas no Rio Grande do Sul e o software ArcGIS. Calcularam-se a escala efetiva, o número de polígonos menores que a área mínima mapeável e um índice de complexidade de forma, e quantificaram-se o número de classes taxonômicas, de tipos de solos e de unidades de mapeamento e a fração da área com dados não uniformes. Os resultados evidenciaram que a qualidade de mapas de solos tende a ser inferior ao presumido para sua escala de apresentação, o que demonstra a importância e a necessidade de avaliações prévias ao seu uso. Indicadores computados a partir dos polígonos e da legenda possibilitam avaliação rápida e objetiva, com potencial de aplicação na sistematização e documentação de dados legados de solos no Brasil.

Multiple Geotechnological Tools Applied to Digital Mapping of Tropical Soils

ABSTRACT In recent years, geotechnologies as remote and proximal sensing and attributes derived from digital terrain elevation models indicated to be very useful for the description of soil variability. However, these information sources are rarely used together. Therefore, a methodology for assessing and specialize soil classes using the information obtained from remote/proximal sensing, GIS and technical knowledge has been applied and evaluated. Two areas of study, in the State of São Paulo, Brazil, totaling approximately 28.000 ha were used for this work. First, in an area (area 1), conventional pedological mapping was done and from the soil classes found patterns were obtained with the following information: a) spectral information (forms of features and absorption intensity of spectral curves with 350 wavelengths -2,500 nm) of soil samples collected at specific points in the area (according to each soil type); b) obtaining equations for determining chemical and physical properties of the soil from the relationship between the results obtained in the laboratory by the conventional method, the levels of chemical and physical attributes with the spectral data; c) supervised classification of Landsat TM 5 images, in order to detect changes in the size of the soil particles (soil texture); d) relationship between classes relief soils and attributes. Subsequently, the obtained patterns were applied in area 2 obtain pedological classification of soils, but in GIS (ArcGIS). Finally, we developed a conventional pedological mapping in area 2 to which was compared with a digital map, ie the one obtained only with pre certain standards. The proposed methodology had a 79 % accuracy in the first categorical level of Soil Classification System, 60 % accuracy in the second category level and became less useful in the categorical level 3 (37 % accuracy).

Bactérias diazotróficas associadas a coqueiros na região de baixada litorânea em Sergipe

Objetivou-se neste trabalho, isolar, identificar e quantificar bactérias diazotróficas existentes nas raízes e folhas de coqueiro (híbrido PB121) cultivados na baixada litorânea de Sergipe. As populações de bactérias diazotróficas nesses órgãos foram quantificadas pela técnica do número mais provável (NMP) em meios semi-sólidos JNFb e NFb, e identificadas por meio de avaliações microscópicas, culturais e de testes bioquímicos dos sistemas API 20 - E e API 20 - NE. O conteúdo de N em meios semi-sólidos NFb e JNFb foi determinado colorimetricamente, após oito dias de incubação das bactérias, a 32ºC, para estimar a capacidade de fixação biológica dos isolados. Enterobactérias pertencentes ao gênero Enterobacter e bactérias com características semelhantes às do gênero Pseudomonas (pseudomonadas) foram predominantes entre os isolados obtidos. As enterobactérias e pseudomonadas isoladas de folhas foram predominantemente endofíticas. Quanto às diazotróficas isoladas de raízes, observou-se predominância de enterobactérias na sua superfície, ao passo que as pseudomonadas ocorreram em proporções semelhantes na superfície e no interior desse órgão. Após oito dias de incubação, os conteúdos de N nos meios com inoculação das bactérias pseudomonadas foram maiores do que nos meios com inoculação das enterobactérias.

Obstrução do horizonte calculada a partir de modelo digital de elevação

O objetivo deste trabalho foi avaliar a exatidão do cálculo da obstrução do horizonte, a partir de um modelo digital de elevação (MDE), em diferentes situações topográficas. O material utilizado incluiu um MDE disponível para a região da Serra Gaúcha, RS, receptores GPS, câmera digital, lente grande‑angular e os programas Idrisi, Arcview/ArcGIS e Solar Analyst. Foram adquiridas fotografias hemisféricas, e coletadas as coordenadas de 16 locais na área de estudo. As coordenadas e o MDE foram utilizados para calcular a obstrução do horizonte com uso do algoritmo Solar Analyst. Foram comparadas a fração aberta do céu calculada e a obtida pelas fotografias hemisféricas. O coeficiente de determinação foi de 0,8428, tendo-se observado superestimativa média de 5,53% da fração aberta do céu. Os erros são atribuídos principalmente à obstrução pela vegetação, que não pode ser identificada pelo MDE. A obstrução do horizonte, causada pelo relevo na Serra Gaúcha, pode ser calculada satisfatoriamente pelo Solar Analyst, a partir de um MDE interpolado de cartas topográficas na escala 1:50.000.

DISTRIBUIÇÃO POTENCIAL DE OLIVEIRAS NO BRASIL E NO MUNDO

RESUMO A demanda pelo azeite de oliva tem sido crescente no mundo, principalmente no Brasil,aumentando a necessidade de expansão da área de plantio. Contudo, nas regiões que são tradicionalmente produtoras, não existe mais espaço, havendo necessidade de procurar novas áreas para plantio no mundo. Neste trabalho, foram identificadas áreas marginais para plantio no Brasil, utilizando modelagem de nicho ecológico, baseando-se em pontos de ocorrência levantados nas regiões produtoras da Europa, Estados Unidos, Austrália e América Latina (Chile, Argentina e Uruguai). Foram usados 346 pontos georreferenciados de ocorrência e planos de informação com dados climáticos (média de temperatura mínima do ar, média de temperatura máxima do ar - em oC - e total de precipitação pluviométrica - em mm) estacionais (primavera, verão, outono e inverno) do mundo, baixados do site do Worldclim. Os dados foram organizados e formatados em sistemas de informações geográficas, usando ArcGIS 10. Finalmente, foram elaborados mapas com a probabilidade de ocorrência de oliveiras no mundo. Foi feito também um mapa apenas da América do Sul, em que são apresentadas as zonas com maior potencial de ocorrência de oliveiras.

Teor e composição do óleo essencial de cinco acessos de mentrasto

This study aimed to analyse the content and the composition of the essential oil of five accesses of mentrasto (Ageratum conyzoides). Five accesses of mentrasto with three repetitions were used. The accesses were obtained in Mariana-MG (AMA), Piranga-MG (API), Visconde do Rio Branco (ARB) and Viçosa-MG (AVB and AVP). The essential oil was obtained by hydrodistillation and the identification of the oil components by CG and GC/MS. The ARB access presented the higher essential oil content, that is 0.70% (P < 0.05). Eleven chemical compounds were identified. The precocene I was the main constituent in the access API, and the precocene II was the main constituent in the accesses AMA, ARB, AVB and AVP.

Separação e determinação quantitativa dos alcanos lineares e dos cíclicos/ramificados em petróleos brasileiros por aduto de ureia e cromatografia gasosa: um estudo de caso revisitado

A complete analysis of oils and their fractions allows correlations to be defined between their composition and derivatives or related geological materials. This work focused on optimization and implementation of a method for separation and quantification of n-alkanes in Brazilian oil samples by urea adduction and GC-FID techniques. Ten samples with different ºAPI were analyzed in triplicate to quantify individual n-alkanes and cyclic/branched alkane fraction. For individual quantification of n-alkanes, internal standardization with deuterated n-tetracosane was used. The use of urea adduction for the separation and quantification of n-alkanes was highly effective, with recovery values of above 80%.

Mapeamento de áreas de risco para ocorrência da ferrugem do eucalipto no Espírito Santo e extremo sul da Bahia

A ferrugem do eucalipto, causada pelo fungo Puccinia psidii Winter, é uma das doenças mais importantes para a eucaliptocultura. O patógeno causa doença principalmente em folhas, hastes e em brotações jovens, sob condições de molhamento foliar noturno acima de 6 horas, por 5 a 7 dias consecutivos, e temperatura na faixa de 18 a 25 ºC, sendo ótimo 23 ºC. Considerando a influência das condições climáticas no ciclo de vida do patógeno, o plantio de eucalipto em épocas e em locais desfavoráveis à ocorrência e desenvolvimento do patógeno é uma das possíveis estratégias de manejo integrado da doença. Assim, objetivou-se mapear áreas de risco de ocorrência para a ferrugem do eucalipto no Espírito Santo e extremo sul da Bahia. Para tanto, calculou-se o índice de infecção (II), a partir da média diária da temperatura máxima (T) e da duração do período de molhamento foliar (H), conforme o modelo II = -32,263 + 3,699 T + 0,461 H - 0,0018 TH - 0,0903 T² - 0,0068 H². Os dados utilizados foram obtidos do banco de dados meteorológicos, das regiões de Aracruz e São Mateus (Espírito Santo) e da Região Teixeira de Freitas (Bahia), referentes aos anos de 2001 a 2006, totalizando 26 estações meteorológicas. A partir do índice de infecção, realizou-se o cálculo de um fator de correção, definido como a razão entre o valor 100 e o maior valor interpolado do índice de infecção, para classificar os valores obtidos dentro de uma escala de 0 e 100 pontos de risco, gerando o índice de risco. Com base no valor do índice de risco, elaboraram-se mapas de distribuição espaço-temporal da ocorrência da doença, utilizando o software ArcGis 9.2TM. Os meses de maio a novembro foram os mais favoráveis para ocorrência da doença. Considerando a distribuição espaço-temporal a metodologia adotada mostrou-se eficiente para o mapeamento do risco de ocorrência da ferrugem do eucalipto para o estado do Espírito Santo e extremo sul da Bahia.