An in-house real-time polymerase chain reaction: standardisation and comparison with the Cobas Amplicor HBV monitor and Cobas AmpliPrep/Cobas TaqMan HBV tests for the quantification of hepatitis B virus DNA

This study aimed to standardise an in-house real-time polymerase chain reaction (rtPCR) to allow quantification of hepatitis B virus (HBV) DNA in serum or plasma samples, and to compare this method with two commercial assays, the Cobas Amplicor HBV monitor and the Cobas AmpliPrep/Cobas TaqMan HBV test. Samples from 397 patients from the state of São Paulo were analysed by all three methods. Fifty-two samples were from patients who were human immunodeficiency virus and hepatitis C virus positive, but HBV negative. Genotypes were characterised, and the viral load was measure in each sample. The in-house rtPCR showed an excellent success rate compared with commercial tests; inter-assay and intra-assay coefficients correlated with commercial tests (r = 0.96 and r = 0.913, p < 0.001) and the in-house test showed no genotype-dependent differences in detection and quantification rates. The in-house assay tested in this study could be used for screening and quantifying HBV DNA in order to monitor patients during therapy.

The identification and differentiation of the Candida parapsilosis complex species by polymerase chain reaction-restriction fragment length polymorphism of the internal transcribed spacer region of the rDNA

Currently, it is accepted that there are three species that were formerly grouped under Candida parapsilosis: C. para- psilosis sensu stricto, Candida orthopsilosis, andCandida metapsilosis. In fact, the antifungal susceptibility profiles and distinct virulence attributes demonstrate the differences in these nosocomial pathogens. An accurate, fast, and economical identification of fungal species has been the main goal in mycology. In the present study, we searched sequences that were available in the GenBank database in order to identify the complete sequence for the internal transcribed spacer (ITS)1-5.8S-ITS2 region, which is comprised of the forward and reverse primers ITS1 and ITS4. Subsequently, an in silico polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) was performed to differentiate the C. parapsilosis complex species. Ninety-eight clinical isolates from patients with fungaemia were submitted for analysis, where 59 isolates were identified as C. parapsilosis sensu stricto, 37 were identified as C. orthopsilosis, and two were identified as C. metapsilosis. PCR-RFLP quickly and accurately identified C. parapsilosis complex species, making this method an alternative and routine identification system for use in clinical mycology laboratories.

Effect of investments on fundamentals and market reaction on pre-operational and operational Brazilian companies for the period 2006-2012

ABSTRACT This paper provides evidence on the market reaction to corporate investment decisions whose shareholder value is largely attributed to growth options. The exploratory research raised pre-operational companies and their operational pairs on the same economy segments. It had the purpose of investigating the existence of statistical differentiation from financial indicators that reflect the installed assets and growth assets, and then study the market reaction to changes in fixed assets as a signaling element about investment decisions. The formation process of operational assets and shareholder value almost exclusively dependent on asset growth stands out in the pre-operational companies. As a result, differentiation tests confirmed that the pre-operational companies had their value especially derived on growth options. The market reaction was particularly bigger in pre-operational companies with abnormal negative stock returns, while the operational companies had positive returns, which may indicate that the quality of the investment is judged based on the financial disclosure. Additionally, operational companies' investors await the disclosure to adjust their prices. We conclude that the results are consistent with the empirical evidence and the participants in financial markets to long-term capital formation investments should give that special attention.

Cross-cultural adaptation of the Caregiver Reaction Assessment for use in Brazil with informal caregivers of the elderly

This study aimed to carry out the cross-cultural adaptation of the Caregiver Reaction Assessment CRA for use in Brazil with informal caregivers of dependent elderly METHOD A methodological study, of five steps: initial translation, synthesis of translations, retro-translation, evaluation by a judge committee and a pre-test, with 30 informal caregivers of older persons in Fortaleza, Brazil. Content validity was assessed by five experts in gerontology and geriatrics. The cross-cultural adaptation was rigorously conducted, allowing for inferring credibility. RESULTS The Brazilian version of the CRA had a simple and fast application (ten minutes), easily understood by the target audience. It is semantically, idiomatically, experimentally and conceptually equivalent to the original version, with valid content to assess the burden of informal caregivers for the elderly (Content Validity Index = 0.883). CONCLUSION It is necessary that other psychometric properties of validity and reliability are tested before using in care practice and research.

Uso de sistema GPR (Ground Penetring Radar) na avaliação de atributos de um solo sob plantio de cana-de-açúcar

O GPR utiliza técnica indireta para investigação das estruturas de subsuperfície, sendo caracterizado como método não-invasivo, o qual permite extrair informações ao longo do perfil de solo sem perfurar, sondar ou escavar. Este trabalho teve o objetivo de avaliar a utilização do GPR no estabelecimento de atributos físicos do solo em área de cultivo com cana-de-açúcar, além de estabelecer sua correlação com o método do cilindro volumétrico. A área de estudo está localizada no município de Bom Sucesso - PR, sendo utilizada com cultura da cana há mais de 20 anos. Foram obtidas amostras de solos indeformadas com cilindro volumétrico nas profundidades de 0-0,1, 0,1-0,2, 0,2-0,3, 0,3-0,4 e 0,4-0,5 m, ao longo de três transeptos paralelos, sendo o central referente à linha de plantio (transepto 2) e os outros dois correspondentes às entrelinhas laterais (transeptos 1 e 3). Os valores de densidade e porosidade total, obtidos por meio das amostras físicas, foram inicialmente interpretados para verificar o estado do solo nas linhas e nas entrelinhas de cana, nas cinco profundidades. Posteriormente, foram correlacionados com os valores das constantes dielétricas (K) adquiridos pelo georradar, porém apenas para a camada de 0,4-0,5 m, uma vez que as camadas superficiais até a profundidade de 0,4 m não puderam ser avaliadas devido às limitações técnicas do equipamento, aliadas às condições físicas e químicas do solo, que acabaram por prejudicar as reflexões. A densidade mostrou-se menor nas linhas, quando comparada às entrelinhas, para as camadas de 0-0,1 e 0,2-0,3 m. A porosidade total foi menor nas entrelinhas do que nas linhas na camada de 0-0,1 m. Os valores de K foram maiores nas linhas, onde a umidade e a porosidade total foram maiores, e menores nas entrelinhas, onde as densidades encontravam se próximas ao limite crítico. A correlação de K com a densidade e porosidade total não foi significativa. Pequenas modificações na porosidade do solo em função do aumento da densidade foram suficientes para diminuir o valor de K nas entrelinhas, devido à redução na quantidade de água nos poros. Esse fato pode ser confirmado pela correlação de K com a umidade. Assim, pode-se dizer que o georradar foi extremamente sensível à variação de umidade no solo, apresentando melhores resultados para esta variável do que para a densidade e porosidade total determinada por meio do cilindro volumétrico.

Effect of intercropping wheat with forage legumes on wheat production and ground cover

The use of winter legumes in southern Brazil is hindered by the slow growth of these species during establishment exposing soil surface to erosion. Introduction of these species along with spring wheat (Triticum aestivum L.) was studied as a means of increasing ground cover during their initial establishment period, without reducing wheat grain yield. Two experiments were conducted in nearby areas, one in each year. Birdsfoot trefoil (Lotus corniculatus L.), red clover (Trifolium pratense L.) cultivar Quiñequelli, white clover (T. repens L.), and arrowleaf clover (T. vesiculosum Savi) did not reduce cereal yield in either year. Wheat yield was reduced by intercropped red clover cultivar Kenland and by subclover (T. subterraneum L.) in the first year. No grain yield differences due to intercropping with any legume were detected in the second year, when rainfall was below normal. Intercropping with wheat showed to be a practical alternative to enhance ground cover at establishing forage legumes.

Quinoa (Chenopodium quinoa) reaction to herbicide residue in a Brazilian Savannah soil

The quinoa (Chenopodium quinoa Willd.) cultivation, one of the most promising in double cropping with soybeans or maize, depends on weed control. The objective of this work was to evaluate quinoa reaction to herbicide residue in a savannah soil. Six herbicide treatments, trifluralin, pendimethalin, clomazone, imazaquin, trifluralin + imazaquin and control, were applied, prior to summer cultivation of soybean, in a Dark-Red Latosol (typic Haplustox). Soybean cultivar BR 9 Savana was grown and soil samples were collected at 15, 38, 100, 145 and 206 days after treatment and stored at -5ºC. Bioassays were conducted in greenhouse, using quinoa, cultivar Q18. Imazaquin was the most harmful to quinoa seedlings, up to 206 days after application, followed by clomazone 15-38 days after application; trifluralin and pendimethalin had no residual effect. These results suggest that a broad-base screening should be conducted.

Reaction of arracacha genotypes to the root soft rot caused by Pectobacterium chrysanthemi

The purpose of this paper was to screen thirty-two arracacha genotypes for their reaction to root soft rot. Twenty roots of each genotype were inoculated with two Pectobacterium chrysanthemi isolates in a randomized experiment (10 roots/isolate). After inoculation, roots were individually wrapped with PVC film and kept at 26ºC in closed plastic bags. Soft rot lesions were recorded after 36 hours and genotypes were grouped in four classes of susceptibility by cluster analysis: 10 were less susceptible, 16 intermediate, 3 susceptible and 3 very susceptible. All the tested arracacha genotypes showed only variation in the degree of susceptibility.

Zinc adsorption in highly weathered soils

The objective of this work was to assess the effects of pH and ionic strength upon zinc adsorption, in three highly weathered variable charge soils. Adsorption isotherms were elaborated from batch adsorption experiments, with increasing Zn concentrations (0-80 mg L-1), and adsorption envelopes were constructed through soil samples reactions with 0.01, 0.1 and 1 mol L-1 Ca(NO3)2 solutions containing 5 mg L-1 of Zn, with an increasing pH value from 3 to 8. Driving force of reaction was quantified by Gibbs free energy and separation factor. Isotherms were C-, H- and L-type and experimental results were fitted to nonlinear Langmuir model. Maximum adsorption ranged from 59-810 mg kg-1, and Zn affinity was greater in subsoil (0.13-0.81 L kg-1) than in the topsoil samples (0.01-0.34 L kg-1). Zinc adsorption was favorable and spontaneous, and showed sharply increase (20-90%) in the 4-6 pH range. No effect of ionic strength was observed at pH values below 5, because specific adsorption mechanisms predominated in the 3-5 pH range. Above pH 5, and in subsoil samples, Zn was adsorbed by electrostatic mechanisms, since ionic strength effect was observed. Despite depth and ionic strength effects, Zn adsorption depends mainly on the pH.