Molecular characterization of DDX26, a human DEAD-box RNA helicase, located on chromosome 7p12

DEAD-box proteins comprise a family of ATP-dependent RNA helicases involved in several aspects of RNA metabolism. Here we report the characterization of the human DEAD-box RNA helicase DDX26. The gene is composed of 14 exons distributed over an extension of 8,123 bp of genomic sequence and encodes a transcript of 1.8 kb that is expressed in all tissues evaluated. The predicted amino acid sequence shows a high similarity to a yeast DEAD-box RNA helicase (Dbp9b) involved in ribosome biogenesis. The new helicase maps to 7p12, a region of frequent chromosome amplifications in glioblastomas involving the epidermal growth factor receptor (EGFR) gene. Nevertheless, co-amplification of DDX26 with EGFR was not detected in nine tumors analyzed.

Frequency of Werner helicase 1367 polymorphism and age-related morbidity in an elderly Brazilian population

Werner syndrome (WS) is a premature aging disease caused by a mutation in the WRN gene. The gene was identified in 1996 and its product acts as a DNA helicase and exonuclease. Some specific WRN polymorphic variants were associated with increased risk for cardiovascular diseases. The identification of genetic polymorphisms as risk factors for complex diseases affecting older people can improve their prevention, diagnosis and prognosis. We investigated WRN codon 1367 polymorphism in 383 residents in a district of the city of São Paulo, who were enrolled in an Elderly Brazilian Longitudinal Study. Their mean age was 79.70 ± 5.32 years, ranging from 67 to 97. This population was composed of 262 females (68.4%) and 121 males (31.6%) of European (89.2%), Japanese (3.3%), Middle Eastern (1.81%), and mixed and/or other origins (5.7%). There are no studies concerning this polymorphism in Brazilian population. These subjects were evaluated clinically every two years. The major health problems and morbidities affecting this cohort were cardiovascular diseases (21.7%), hypertension (83.7%), diabetes (63.3%), obesity (41.23%), dementia (8.0%), depression (20.0%), and neoplasia (10.8%). Their prevalence is similar to some urban elderly Brazilian samples. DNA was isolated from blood cells, amplified by PCR and digested with PmaCI. Allele frequencies were 0.788 for the cysteine and 0.211 for the arginine. Genotype distributions were within that expected for the Hardy-Weinberg equilibrium. Female gender was associated with hypertension and obesity. Logistic regression analysis did not detect significant association between the polymorphism and morbidity. These findings confirm those from Europeans and differ from Japanese population.

Extração de frações antigênicas de S. Mansoni com KC1

Utilizando 5 partidas de S. mamsoni adultos, obtidos pela infecção de cobaios e camundongos, obtiveram-se três extratos antigênicos (E1, E2 e E3). Estes extratos, em contacto com soro de doentes esquistossomóticos, forneceram as linhas de precipitação da Fig. 1 pelo processo de imunoeletroosmoforese.

Molecular characterization of group A rotavirus before and after the introduction of vaccines in Brazil

ABSTRACTINTRODUCTION:In this study, the molecular characteristics of group A rotavirus (RVA) were compared in samples obtained before and after RVA vaccine-introduction in Brazil.METHODS:Eighty samples were screened for the presence of RVA. Positive samples were molecularly analyzed.RESULTS:RVA positivity was 16.9%, with a predominance of G2P[4]. Periods: pre-vaccination: predominance of IId (G1), IId (G2) lineages, and I1 and E1 genotypes; post-vaccination: predominance of Ib (G1), IIa, and IIc (G2) lineages and I2 and E2 genotypes.CONCLUSIONS:Although changes in RVA-circulation pattern were observed in the post-vaccination period, it could not be attributed to vaccination process.

Pressão arterial obtida pelos métodos oscilométrico e auscultatório antes e após exercício em idosos

FUNDAMENTO: Diferentes métodos de medida da pressão arterial (PA) têm sido utilizados em avaliações clínicas e científicas. Entretanto, os métodos empregados apresentam limitações e particularidades a serem consideradas. OBJETIVO: Avaliar se valores semelhantes de PA são obtidos em idosos hipertensos submetidos ao exercício resistido, ao usarem-se os métodos oscilométrico (Omron-HEM-431) e auscultatório (esfigmomanômetro de mercúrio). MÉTODOS: Dezesseis idosos hipertensos realizaram três sessões experimentais randomizadas com diferentes volumes: as sessões controle (C: 40 minutos), exercício 1 (E1: 20 minutos) e exercício 2 (E2: 40 minutos). A PA foi medida simultaneamente pelos dois métodos, a cada 5 minutos durante 20 minutos antes das sessões e durante 60 minutos após as mesmas. RESULTADOS: No período pré-intervenção houve boa concordância entre as medidas da pressão arterial sistólica (PAS) e diastólica (PAD) obtidas pelos dois métodos, havendo também elevada concordância geral após as sessões (Coeficiente de Lin = 0,82 e 0,81, respectivamente). Houve melhor concordância da PAD após a sessão controle do que após as sessões de exercício. A diferença entre as medidas obtidas entre os dois métodos foi maior para a PAD do que para a PAS após todas as sessões (p < 0.001). Independentemente do método, pode-se verificar a queda da PAS e da PAD que ocorreram nos primeiros 60 minutos após a realização dos exercícios. CONCLUSÃO: Os métodos auscultatório e oscilométrico foram concordantes antes e após as sessões controle e de exercícios, havendo, no entanto, maiores diferenças da PAD do que da PAS, sendo esta última muito semelhante entre métodos.

Proposal Intensity Adequacy of Expiratory Effort and Heart Rate Behavior During the Valsalva Maneuver in Preadolescents

Background: When performing the Valsalva maneuver (VM), adults and preadolescents produce the same expiratory resistance values. Objective: To analyze heart rate (HR) in preadolescents performing VM, and propose a new method for selecting expiratory resistance. Method: The maximal expiratory pressure (MEP) was measured in 45 sedentary children aged 9-12 years who subsequently performed VM for 20 s using an expiratory pressure of 60%, 70%, or 80% of MEP. HR was measured before, during, and after VM. These procedures were repeated 30 days later, and the data collected in the sessions (E1, E2) were analyzed and compared in periods before, during (0-10 and 10-20 s), and after VM using nonparametric tests. Results: All 45 participants adequately performed VM in E1 and E2 at 60% of MEP. However, only 38 (84.4%) and 25 (55.5%) of the participants performed the maneuver at 70% and 80% of MEP, respectively. The HR delta measured during 0-10 s and 10-20 s significantly increased as the expiratory effort increased, indicating an effective cardiac autonomic response during VM. However, our findings suggest the VM should not be performed at these intensities. Conclusion: HR increased with all effort intensities tested during VM. However, 60% of MEP was the only level of expiratory resistance that all participants could use to perform VM. Therefore, 60% of MEP may be the optimal expiratory resistance that should be used in clinical practice.

Adubação em "torrão paulista" de Eucalyptus Saligna SM

Num ensaio de adubação com N, P, K e estêrco (E) de mudas de eucalipto (Eucalyptus saligna Sm.) em "torrão paulista" nos viveiros da Cia. Paulista de Estrada de Ferro, em Rio Claro, SP, foi usado um delineamento fatorial de 3x3x3x2, com resultados estatisticamente significativos para N, P e estêrco. As alturas médias das mudas, em centímetros, 3(1/2) meses após a repicagem para os torrões, foram as seguintes. N0 42,4 ± 1,5 P0 56,4 ± 1,5 E0 54,9 ± 1,2 N1 62,8 ± 1,5 P1 58,4 ± 1,5 E1 64,0 ± 1,2 N2 73,2 ± 1,5 P2 63,6 ± 1,5 As médias de algumas combinações interessantes de tratamentos são dadas a seguir, em centímetros. N0PoK0Eo 41,3 ± 6,2 N2P2K0E1 83,0 ± 6,2 N2P0K0E0 59,6 ± 6,2 N2P2K2E1 87,4 ± 6,2 N2P2K0E0 64,0 ± 6,2

Sobre o isolamento de Salmonellas de gânglios linfáticos de suínos abatidos no matadouro da cidade de Salavador - Bahia

Numa pesquisa efetuada em gânglios linfáticos de 3.674 suínos, aparentemente normais, e abatidos no Matadouro Municipal de Salvador e no Frigorífico Frimisa, isolaram-se 503 amostras de Salmonellas, sendo 461 ou 91,65% provenientes de gânglios crurais e pré-crurais e 42 culturas restantes, ou sejam 8,35% obtidas de outros gânglios. o estudo das 503 amostras, representando 13,69% de isolamentos no total dos suínos examinados, mostrou a existência de 52 sorotipos diferentes com dominância do grupo sorológico somático E1 em 48,70% das salmonellas seguindo-se o grupo B com 27,43%, C1 com 6,16%, L com 4,97%, C2 com 4,77% e D1 com 3,38%. Em menor percentagem registraram-se os grupos G1, N1, J, E2, e3 e E4.

Colicinogeny in Salmonella serovars isolated in Brazil

A study of colicinogeny was made in 748 strains of Salmonella (97 serovars) isolated from different sources; human (291), animal (119), environmental (141), food (102) and animal feed (95). Colicin production was detected in 64 strains (8.6%), particularly isolated from foods (30.4%). Col. E1 (53) and Ia (44) were the most frequently observed, especially in S. agona for environment and food sources. Col V production was identified in 5 strains of S. typhimurium within 8 producer cultures isolated from humans. Its relationship with the sources and serovars of Salmonella are discussed.

New insights into trypanosomatid U5 small nuclear ribonucleoproteins

Several protozoan parasites exist in the Trypanosomatidae family, including various agents of human diseases. Multiple lines of evidence suggest that important differences are present between the translational and mRNA processing (trans splicing) systems of trypanosomatids and other eukaryotes. In this context, certain small complexes of RNA and protein, which are named small nuclear ribonucleoproteins (U snRNPs), have an essential role in pre-mRNA processing, mainly during splicing. Even though they are well defined in mammals, snRNPs are still not well characterized in trypanosomatids. This study shows that a U5-15K protein is highly conserved among various trypanosomatid species. Tandem affinity pull-down assays revealed that this protein interacts with a novel U5-102K protein, which suggests the presence of a sub-complex that is potentially involved in the assembly of U4/U6-U5 tri-snRNPs. Functional analyses showed that U5-15K is essential for cell viability and is somehow involved with the trans and cis splicing machinery. Similar tandem affinity experiments with a trypanonosomatid U5-Cwc21 protein led to the purification of four U5 snRNP specific proteins and a Sm core, suggesting U5-Cwc-21 participation in the 35S U5 snRNP particle. Of these proteins, U5-200K was molecularly characterized. U5-200K has conserved domains, such as the DEAD/DEAH box helicase and Sec63 domains and displays a strong interaction with U5 snRNA.

Molecular characterisation of the NSP4 gene of group A human rotavirus G2P[4] strains circulating in São Paulo, Brazil, from 1994 and 2006 to 2010

Group A human rotaviruses (HuRVA) are causative agents of acute gastroenteritis. Six viral structural proteins (VPs) and six nonstructural proteins (NSPs) are produced in RV-infected cells. NSP4 is a diarrhoea-inducing viral enterotoxin and NSP4 gene analysis revealed at least 15 (E1-E15) genotypes. This study analysed the NSP4 genetic diversity of HuRVA G2P[4] strains collected in the state of São Paulo (SP) from 1994 and 2006-2010 using reverse transcription-polymerase chain reaction, sequencing and phylogenetic analysis. Forty (97.6%) G2P[4] strains displayed genotype E2; one strain (2.4%) displayed genotype E1. These results are consistent with the proposed linkage between VP4/VP7 (G2P[4]) and the NSP4 (E2) genotype of HuRVA. NSP4 phylogenetic analysis showed distinct clusters, with grouping of most strains by their genotype and collection year, and most strains from SP were clustered together with strains from other Brazilian states. A deduced amino acid sequence alignment for E2 showed many variations in the C-terminal region, including the VP4-binding domain. Considering the ability of NSP4 to generate host immunity, monitoring NSP4 variations, along with those in the VP4 or VP7 protein, is important for evaluating the circulation and pathogenesis of RV. Finally, the presence of one G2P[4]E1 strain reinforces the idea that new genotype combinations emerge through reassortment and independent segregation.

Mayaro virus and dengue virus 1 and 4 natural infection in culicids from Cuiabá, state of Mato Grosso, Brazil

This study aimed to verify the diversity of Culicidae species and their frequency of infection with flaviviruses and alphaviruses in Cuiabá, state of Mato Grosso, Brazil. Mosquitoes were captured with Nasci aspirators and hand net in 200 census tracts, identified alive at species level and pooled in one-20 (11,090 mosquitoes, 14 species). Female pools (n = 610) were subjected to multiplex seminested-reverse transcription-polymerase chain reaction (RT-PCR) for 11 flavivirus and five alphavirus. Positive pools were tested by single RT-PCR followed by nucleotide sequencing, by RT-PCR for E1 gene [Mayaro virus (MAYV)] and by inoculation in Vero cells (MAYV) or C6/36 cells (flaviviruses). One/171 Aedes aegypti was positive for dengue virus (DENV)-1, 12/403 Culex quinquefasciatus, and four/171Ae. aegypti for MAYV, which was isolated from two pools containing two nonengorged females of Ae. aegypti and two ofCx. quinquefasciatus. DENV-4 was detected in 58/171 pools of Ae. aegytpi, 105/403 Cx. quinquefasciatus, two/five Psorophora sp., two/11 Psorophora varipes/Psorophora albigenu, one/one Sabethes chloropterus, two/five Culex bidens/Culex interfor, and one/one Aedes sp. DENV-4 was isolated from two pools containing three and 16 nonengorged Cx. quinquefasciatus females. Phylogenetic analysis revealed MAYV belongs to genotype L, clustering with human samples of the virus previously identified in the city. Cuiabá has biodiversity and ecosystem favourable for vector proliferation, representing a risk for arbovirus outbreaks.

Whole genome sequence of Klebsiella pneumoniae U25, a hypermucoviscous, multidrug resistant, biofilm producing isolate from India

Klebsiella pneumoniae U25 is a multidrug resistant strain isolated from a tertiary care hospital in Chennai, India. Here, we report the complete annotated genome sequence of strain U25 obtained using PacBio RSII. This is the first report of the whole genome of K. pneumoniaespecies from Chennai. It consists of a single circular chromosome of size 5,491,870-bp and two plasmids of size 211,813 and 172,619-bp. The genes associated with multidrug resistance were identified. The chromosome of U25 was found to have eight antibiotic resistant genes [blaOXA-1,blaSHV-28, aac(6’)1b-cr,catB3, oqxAB, dfrA1]. The plasmid pMGRU25-001 was found to have only one resistant gene (catA1) while plasmid pMGRU25-002 had 20 resistant genes [strAB, aadA1,aac(6’)-Ib, aac(3)-IId,sul1,2, blaTEM-1A,1B,blaOXA-9, blaCTX-M-15,blaSHV-11, cmlA1, erm(B),mph(A)]. A mutation in the porin OmpK36 was identified which is likely to be associated with the intermediate resistance to carbapenems in the absence of carbapenemase genes. U25 is one of the few K. pneumoniaestrains to harbour clustered regularly interspaced short palindromic repeats (CRISPR) systems. Two CRISPR arrays corresponding to Cas3 family helicase were identified in the genome. When compared to K. pneumoniaeNTUHK2044, a transposase gene InsH of IS5-13 was found inserted.

Complete genome sequence of Deltapapillomavirus 4 (bovine papillomavirus 2) from a bovine papillomavirus lesion in Amazon Region, Brazil

The complete genome sequence of bovine papillomavirus 2 (BPV2) from Brazilian Amazon Region was determined using multiple-primed rolling circle amplification followed by Illumina sequencing. The genome is 7,947 bp long, with 45.9% GC content. It encodes seven early (E1, E2,E4, E5, E6,E7, and E8) and two late (L1 and L2) genes. The complete genome of a BPV2 can help in future studies since this BPV type is highly reported worldwide although the lack of complete genome sequences available.

Revisão sistemática sobre aventais cirúrgicos no controle da contaminação/infecção do sítio cirúrgico

O avental cirúrgico é confeccionado com materiais de tecido e não-tecido. O estudo teve como objetivo verificar se há evidências científicas, pela revisão sistemática, que fundamentem a prática do uso de aventais em cirurgias, conforme seu material de confecção. Consideraram-se estudos básicos de intervenção, que investigaram a contaminação e ou a infecção do sítio cirúrgico com uso de aventais cirúrgicos reutilizáveis e ou de uso-único, utilizando como população pessoas submetidas a cirurgias, em situações reais ou simuladas, em qualquer período, sem limitação de idioma. Para localizar os estudos, utilizou-se estratégia de busca nas bases de dados eletrônicas. Constata-se, com isso, dificuldade de isolar o objeto de intervenção de outros inúmeros fatores que podem interferir nos desfechos, em estudos desta natureza. Dois estudos (E1, E2) obtiveram forte evidência de recomendação, concluindo pela não diferença de contaminação e infecção do sítio cirúrgico entre aventais e campos de tecido e não-tecido.