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Vertical distributions and diel migrations of the main species of micronekton, four euphausiids, one mysid, one decapod and three fishes, were described in detail in the 0-1000 m water column on a fixed station in the Northwestern Mediterranean Sea. The euphausiids Euphausia krohni and Thysanopoda aequalis, the decapod Gennadas elegans and, to a lesser extent, the fish Argyropelecus hemigymnus were shown to perform clear diel vertical migrations. Results of horizontal hauls at a given depth around sunrise and sunset showed a marked diurnal symmetry of the migratory cycles, particularly for E.krohni, T.aequalis and G.elegans. The behaviour of the euphausiid Nematoscelis megalops was more complex: it presented a repetitive bimodal day distribution and only part of its population migrated. As very weak or non-migrators we found the euphausiid Stylocheiron longicorne and the bathypelagic mysid Eucopia unguiculata, for which migration concerned only some of the older individuals. The fishes Cyclothone braueri and Cyclothone pygmaea appeared to be non-migrants. As depth increased, C.braueri was replaced by C.pygmaea, with maximum concentrations at 350-550 and 550-700 m depth, respectively.

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A large population of the colonial pelagic tunicate Pyrosoma atlanticum occurred in April 1991 in offshore waters of the Ligurian Sea (Northwestern Mediterranean). The high numbers of colonies caught allowed their vertical distribution and diel migration in the 0-965 m water column to be described as a function of their size. Daytime depths and amplitudes of the migration were correlated with colony size. The amplitude of the migration ranged from 90 m for 3-mm-length colonies to 760 m for 51-mm-length colonies, with a mean amplitude of 410 m for the whole population, all sizes pooled. The results of horizontal hauls at a given depth around sunrise and sunset showed a marked diurnal symmetry of the migratory cycle relative to noon, and that migration of the population was not cohesive. For example, the larger the colonies, the later after sunset they reached the upper layers during their upward migration.

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Precise measurements were conducted in continuous flow seawater mesocosms located in full sunlight that compared metabolic response of coral, coral-macroalgae and macroalgae systems over a diurnal cycle. Irradiance controlled net photosynthesis (Pnet), which in turn drove net calcification (Gnet), and altered pH. Pnet exerted the dominant control on [CO3]2- and aragonite saturation state (Omega arag) over the diel cycle. Dark calcification rate decreased after sunset, reaching zero near midnight followed by an increasing rate that peaked at 03:00 h. Changes in Omega arag and pH lagged behind Gnet throughout the daily cycle by two or more hours. The flux rate Pnet was the primary driver of calcification. Daytime coral metabolism rapidly removes dissolved inorganic carbon (DIC) from the bulk seawater and photosynthesis provides the energy that drives Gnet while increasing the bulk water pH. These relationships result in a correlation between Gnet and Omega arag, with Omega arag as the dependent variable. High rates of H+ efflux continued for several hours following mid-day peak Gnet suggesting that corals have difficulty in shedding waste protons as described by the Proton Flux Hypothesis. DIC flux (uptake) followed Pnet and Gnet and dropped off rapidly following peak Pnet and peak Gnet indicating that corals can cope more effectively with the problem of limited DIC supply compared to the problem of eliminating H+. Over a 24 h period the plot of total alkalinity (AT) versus DIC as well as the plot of Gnet versus Omega arag revealed a circular hysteresis pattern over the diel cycle in the coral and coral-algae mesocosms, but not the macroalgae mesocosm. Presence of macroalgae did not change Gnet of the corals, but altered the relationship between Omega arag and Gnet. Predictive models of how future global changes will effect coral growth that are based on oceanic Omega arag must include the influence of future localized Pnet on Gnet and changes in rate of reef carbonate dissolution. The correlation between Omega arag and Gnet over the diel cycle is simply the response of the CO2-carbonate system to increased pH as photosynthesis shifts the equilibria and increases the [CO3]2- relative to the other DIC components of [HCO3]- and [CO2]. Therefore Omega arag closely tracked pH as an effect of changes in Pnet, which also drove changes in Gnet. Measurements of DIC flux and H+ flux are far more useful than concentrations in describing coral metabolism dynamics. Coral reefs are systems that exist in constant disequilibrium with the water column.