Diversity of zooplankton assemblages at Station L4, Western English Channel, measured using next generation DNA sequencing

Background: Zooplankton play an important role in our oceans, in biogeochemical cycling and providing a food source for commercially important fish larvae. However, difficulties in correctly identifying zooplankton hinder our understanding of their roles in marine ecosystem functioning, and can prevent detection of long term changes in their community structure. The advent of massively parallel Next Generation Sequencing technology allows DNA sequence data to be recovered directly from whole community samples. Here we assess the ability of such sequencing to quantify the richness and diversity of a mixed zooplankton assemblage from a productive monitoring site in the Western English Channel. Methodology/Principle Findings: Plankton WP2 replicate net hauls (200 µm) were taken at the Western Channel Observatory long-term monitoring station L4 in September 2010 and January 2011. These samples were analysed by microscopy and metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene using the 454 pyrosequencing platform. Following quality control a total of 419,042 sequences were obtained for all samples. The sequences clustered in to 205 operational taxonomic units using a 97% similarity cut-off. Allocation of taxonomy by comparison with the National Centre for Biotechnology Information database identified 138 OTUs to species level, 11 to genus level and 1 to order, <2.5% of sequences were classified as unknowns. By comparison a skilled microscopic analyst was able to routinely enumerate only 75 taxonomic groups. Conclusions: The percentage of OTUs assigned to major eukaryotic taxonomic groups broadly aligns between the metagenetic and morphological analysis and are dominated by Copepoda. However, the metagenetics reveals a previously hidden taxonomic richness, especially for Copepoda and meroplankton such as Bivalvia, Gastropoda and Polychaeta. It also reveals rare species and parasites. We conclude that Next Generation Sequencing of 18S amplicons is a powerful tool for estimating diversity and species richness of zooplankton communities.

Survival of Atlantic cod larvae from the Barents Sea and the Western Baltic sea due to ocean acidification from two experiments

The data show the survival data of Atlantic cod larvae from two different stocks, which were measured in two separate experiments in Kristineberg, Sweden in 2013 on the Western Baltic stock and in Tromsö, Norway in 2014 on the Barents Sea stock. Survival was measured as a response to ocean acidification, control tanks were kept at ambient CO2 concentrations. CO2 concentrations and feeding concentrations are also provided.

Sedimentology, foraminiferal assemblage, and isotope record of the Agulhas Bank region

The Agulhas Bank region, south of Africa, is an oceanographically important and complex area. The leakage of warm saline Indian Ocean water into the South Atlantic around the southern tip of Africa is a crucial factor in the global thermohaline circulation. Foraminiferal assemblage, stable isotope and sedimentological data from the top 10 m of core MD962080, recovered from the western Agulhas Bank Slope, are used to indicate changes in water mass circulation in the southeastern South Atlantic for the last 450 kyr. Sedimentological and planktonic foraminiferal data give clear signals of cold water intrusions. The benthic stable isotope record provides the stratigraphic framework and indicates that the last four climatic cycles are represented (i.e. down to marine isotope stage (MIS) 12). The planktonic foraminiferal assemblages bear a clear transitional to subantarctic character with Globorotalia inflata and Neogloboquadrina pachyderma (dextral) being the dominant taxa. Input of cold, subantarctic waters into the region by means of leakage through the Subtropical Convergence, as part of Agulhas ring shedding, and a general cooling of surface waters is suggested by increased occurrence of the subantarctic assemblage during glacial periods. Variable input of Indian Ocean waters via the Agulhas Current is indicated by the presence of tropical/subtropical planktonic foraminiferal species Globoquadrina dutertrei, Globigerinoides ruber (alba) and Globorotalia menardii with maximum leakage occurring at glacial terminations. The continuous presence of G. menardii throughout the core suggests that the exchange of water from the South Indian Ocean to the South Atlantic Ocean was never entirely obstructed in the last 450 kyr. The benthic carbon isotope record and sediment textural data reflect a change in bottom water masses over the core location from North Atlantic Deep Water to Upper Southern Component Water. Planktonic foraminiferal assemblages and sediment composition indicate a profound change in surface water conditions over the core site approximately 200-250 kyr BP, during MIS 7, from mixed subantarctic and transitional water masses to overall warmer surface water conditions.

Planktic foraminiferal assemblage turnover at the Cretaceous-Tertiary boundary

Three uppermost Cretaceous through basal Paleocene stratigraphic sequences are examined for planktic foraminiferal assemblage stability and temporal succession patterns. These sequences are at mid-latitude South Atlantic DSDP Site 528, then-equatorial Pacific DSDP Site 577 and the Tethyan shelf Ben Gurion section of the Negev, Israel. In order to better estimate biogeographic patterns and habitat preferences, the results of these analyses are compared to previous Cretaceous biogeographic studies and to previous analyses of Cretaceous-Tertiary (K/T) boundary shelf and epicontinental sections. Results indicate that immediately following the K/T boundary, the examined epicontinental and open-ocean sites were exploited primarily by previously epicontinental planktic foraminiferal assemblages. This pattern of K/T boundary assemblage dominance suggests the geologically instantaneous break-down of Late Cretaceous epicontinental and open-ocean biogeographic provincialization. This shift in open-ocean foraminiferal assemblages is not consistent with models of nonselective K/T boundary extinctions, but is consistent with models of extinction resistence and offshore expansion of nearshore taxa. The re-establishment of stable biogeographic differences between open-ocean and epicontinental planktic foraminiferal assemblages occurs by the basal Parvularugoglobigerina eugubina Zone. At open-ocean sites 528 and 577 and the outershelf Ben Gurion section, P0 and P. eugubina Zone faunal records are marked by a pronounced alternation between Paleocene biserial- and non-biserial-dominated assemblages, This alternation appears strongly damped at shelf and epicontinental sections previously examined. The first appearance and peak magnitude of abundant earliest Paleocene trochospiral forms (Parvularugoglobigerina, Eoglobigerina, Morozovella, Globoconusa) also vary from site to site and may depend closely on levels of primary carbonate productivity.