Maize Stress DIESI-MS Data and R Script

Climatic change is an increasing challenge for agriculture that is driving the development of suitable crops in order to ensure supply for both human nutrition and animal feed. In this context, it is increasingly important to understand the biochemical responses of cells to environmental cues at the whole system level, an aim that is being brought closer by advances in high throughput, cost-efficient plant metabolomics. To support molecular breeding activities, we have assessed the economic, technical and statistical feasibility of using direct mass spectrometry methods to evaluate the physiological state of maize (Zea mays L.) plants grown under different stress conditions.

Annotated record of the detailed examination of Mn deposits in the Atlantic Ocean from cruises from R/V Atlantis II, R/V Knorr, R/V Melvin and R/V James M. Gilliss in 1980-1981

This report is Volume 3 of Descriptions of WHOI rock dredge samples. This series represents a major effort to catalog the rock dredge samples in the WHOI Sea Floor samples collection, and to disseminate this information throughout the scientific community. Volume 3 contains sample descriptions and station data for the dredge stations from five cruises during the period September 1978 through December 1980. The material in this and subsequent volumes of rock descriptions was largely prepared onboard ship by the participating scientists. Volume 3 was printed prior to volumes 1 and 2 because of the excellent documentation of the samples represented in this volume.

Geochemistry of selected Ferrar samples from Northern Victoria Land and George V Land during GANOVEX VIII

Newly sampled basaltic andesites and andesites from the tholeiitic Ferrar Supergroup of northern Victoria Land and George V Land, Antarctica, are attributed to the known low-Ti and high-Ti series. Aside from known sparsely distributed high-Ti extrusives, a high-Ti sill was found in the Alamein Range outside the Rennick Graben. Low-Ti lavas, sills and dikes display wide petrographical, mineral and geochemical variations, reflecting extensive in-situ differentiation. High-Ti rocks from Litell Rocks are homogeneous with respect to mineralogy and geochemistry, minor deviations are shown by the sampled sill. Chilled margins of low-Ti sills, dikes and lava flows exhibit nearly constant bulk-rock chemistry (mg# ~60) within the studied area. Compared to chilled margins from Tasmanian sills, the striking uniformity of the pre-emplacement chemistry of Ferrar magmas over large distances supports the magma transport model of Elliot et al. (1999, doi:10.1016/S0012-821X(99)00023-0). In the area investigated, compositional variations within the low-Ti series, caused by in-situ differentiation, increase towards the Wilson-Bowers Terrane boundary, possibly displaying the asymmetrical distribution of outcrops over this area. Absence of Ferrar occurrences east of the Bowers Terrane remains a matter of palaeo-geodynamic discussion. Besides, the secondary mineralogy of extrusives from Litell Rocks and Monument Nunataks exhibits noticeable differences, which indicates an elevated thermal gradient in the vicinity of Litell Rocks compared to Monument Nunataks during the Cretaceous.

Data compilation on the biological response to ocean acidification: environmental and experimental context of data sets and related literature

The exponential growth of studies on the biological response to ocean acidification over the last few decades has generated a large amount of data. To facilitate data comparison, a data compilation hosted at the data publisher PANGAEA was initiated in 2008 and is updated on a regular basis (doi:10.1594/PANGAEA.149999). By January 2015, a total of 581 data sets (over 4 000 000 data points) from 539 papers had been archived. Here we present the developments of this data compilation five years since its first description by Nisumaa et al. (2010). Most of study sites from which data archived are still in the Northern Hemisphere and the number of archived data from studies from the Southern Hemisphere and polar oceans are still relatively low. Data from 60 studies that investigated the response of a mix of organisms or natural communities were all added after 2010, indicating a welcomed shift from the study of individual organisms to communities and ecosystems. The initial imbalance of considerably more data archived on calcification and primary production than on other processes has improved. There is also a clear tendency towards more data archived from multifactorial studies after 2010. For easier and more effective access to ocean acidification data, the ocean acidification community is strongly encouraged to contribute to the data archiving effort, and help develop standard vocabularies describing the variables and define best practices for archiving ocean acidification data.

Bathymetry grids and maps of Mozambique Ridge compiled from cruises 64PE305, 64PE306, SO-87, SO-182, SO-183, ME-33/2, ME-63/1 bathymetry

Based on data from R.V. Pelagia, R.V. Sonne and R.V. Meteor multibeam sonar surveys, a high resolution bathymetry was generated for the Mozambique Ridge. The mapping area is divided into five sheets, one overview and four sub-sheets. The boundaries are (west/east/south/north): Sheet 1: 28°30' E/37°00' E/36°20' S/24°50' S; Sheet 2: 32°45' E/36°45' E/28°20' S/25°20' S; Sheet 3: 31°30' E/36°45' E/30°20' S/28°10' S; Sheet 4: 30°30' E/36°30' E/33°15' S/30°15' S; Sheet 5: 28°30' E/36°10' E/36°20' S/33°10' S. Each sheet was generated twice: one from swath sonar bathymetry only, the other one is completed with depths from ETOPO2 predicted bathymetry. Basic outcome of the investigation are Digital Terrain Models (DTM), one for each sheet with 0.05 arcmin (~91 meter) grid spacing and one for the entire area (sheet 1) with 0.1 arcmin grid spacing. The DTM's were utilized for contouring and generating maps. The grid formats are NetCDF (Network Common Data Form) and ASCII (ESRI ArcGIS exchange format). The Maps are formatted as jpg-images and as small sized PNG (Portable Network Graphics) preview images. The provided maps have a paper size of DIN A0 (1189 x 841 mm).

Seawater carbonate chemistry and calcification during tropical reef studies at Moorea (French Polynesia), 1997

Community metabolism and air-sea carbon dioxide (CO2) fluxes were investigated in July 1992 on a fringing reef at Moorea (French Polynesia). The benthic community was dominated by macroalgae (85% substratum cover) and comprised of Phaeophyceae Padina tenuis (Bory), Turbinaria ornata (Turner) J. Agardh, and Hydroclathrus clathratus Bory (Howe); Chlorophyta Halimeda incrassata f. ovata J. Agardh (Howe); and Ventricaria ventricosa J. Agardh (Olsen et West), as well as several Rhodophyta (Actinotrichia fragilis Forskál (Børgesen) and several species of encrusting coralline algae). Algal biomass was 171 g dry weight/m**2. Community gross production (Pg), respiration (R), and net calcification (G) were measured in an open-top enclosure. Pg and R were respectively 248 and 240 mmol Co2/m**2/d, and there was a slight net dissolution of CaCO3 (0.8 mmol/m**2/d). This site was a sink for atmospheric CO2 (10 ± 4 mmol CO2/m**2/d), and the analysis of data from the literature suggests that this is a general feature of algal-dominated reefs. Measurement of air-sea CO2 fluxes in open water close to the enclosure demonstrated that changes in small-scale hydrodynamics can lead to misleading conclusions. Net CO2 evasion to the atmosphere was measured on the fringing reef due to changes in the current pattern that drove water from the barrier reef (a C02 source) to the study site.

Diatoms and laminae of Mediterranean sapropels

The origins of sapropels (sedimentary layers rich in organic carbon) are unclear, yet they may be a key to understanding the influence of climate on ocean eutrophication, the mechanisms of sustaining biological production in stratified waters and the genesis of petroleum source rocks (Rohling, 1994, doi:10.1016/0025-3227(94)90202-X; Castradori, 1993, doi:10.1029/93PA00756; Calvert et al., 1992, doi:10.1038/359223a0). Recent microfossil studies of foraminifera (Rohling, 1994, doi:10.1016/0025-3227(94)90202-X) and calcareous nannofossils (Castradori, 1993, doi:10.1029/93PA00756) have focused attention on a deep chlorophyll maximum as a locus for the high production inferred (Calvert et al., 1992, doi:10.1038/359223a0) for sapropel formation, but have not identified the agent responsible. Here we report the results of a high-resolution, electron-microscope-based study of a late Quaternary laminated sapropel in which the annual flux cycle has been preserved. We find that much of the production was by diatoms, both mat-forming and other colonial forms, adapted to exploit a deep nutrient supply trapped below surface waters in a stratified water column. Reconstructed organic-carbon and opal fluxes to the sediments are comparable to those at high-productivity sites in today's oceans, and calculations based on diatom Si/C ratios suggest that the high organic-carbon content of sapropels may be entirely accounted for by sedimenting diatoms. We propose that this style of production may have been common in ancient Palaeogene and Cretaceous seas, environments for which conventional appeals to upwelling-driven production to account for the occurrence of diatomites, and some organic-carbon-rich sediments, have never seemed wholly appropriate.

Polyaromatic hydrocarbons in sediments from the Barents and White Seas

Polycyclic aromatic hydrocarbons (PAHs) are common environmental contaminants which can be derived from anthropogenic sources, such as combustion and discharges from extraction and transport, and natural processes, including leakage and erosion of fossil carbon. Natural PAH sources contribute, along with biological activities and terrestrial run-off, to the organic carbon content in sediments.The Barents Sea region is far from many anthropogenic sources of PAH, but production and trans-shipment of hydrocarbons is increasing. We present data for polycyclic aromatic hydrocarbon (PAH) concentrations in bottom sediments from 510 stations in the Barents and White Seas, and along the northern coast of Norway.

Middle to Late Quaternary sedimentation and rock-magnetic of ODP Site 105-646

We examine rock-magnetic, carbonate, and planktonic foraminiferal fluxes to identify climatically controlled changes of terrigenous and pelagic sedimentation at Ocean Drilling Program (ODP) Site 646 (the Labrador Sea). Terrigenous sediments are brought to the site principally by bottom currents. We use a rock-magnetic parameter sensitive to changes in magnetic mineral grain size, the ratio of anhysteretic susceptibility to low-field magnetic susceptibility (XARM/X), to monitor changes in bottom-current intensity over time, with large values of XARM/X (finer-grained magnetic minerals) indicating weaker bottom currents. A second rock-magnetic parameter, magnetic mineral accumulation rate (KaT) was used to indicate variations in terrigenous flux. Planktonic foraminiferal and carbonate accumulation rates (Pfar and CaC03ar) are used as indicators of pelagic flux. Absolute age assignments are based on correlation between the planktonic foraminiferal oxygen-isotope variations for Site 646 and the SPECMAP master oxygen-isotope curve. Cross-correlation analyses of the parameters that we studied with respect to the SPECMAP curve suggest that from oxygen-isotope stages 21 to 11, sedimentation rate, KaT, X, CaCO3ar, and Pfar were at their maximums, whereas XARM/X was at its minimum during peak interglacials (i.e., 0 k.y. lag time with respect to minimum ice volume). However, all parameters we examined lag behind minimum ice volume from stages 11 to 1, indicating a change in timing of both pelagic and terrigenous fluxes at approximately 400 k.y. BP. The negative correlation coefficient between XARM/X and the SPECMAP curve further suggest that finer-grained magnetic minerals are deposited during glacial periods, which probably reflects weaker bottom currents. The shift observed in the lag times of parameters examined with respect to the SPECMAP record is attributed to a change in significance of orbital parameters. Spectral results exhibit strong power in eccentricity (about 100 k.y.) throughout the record. Kap X, CaCO3flr, and Pfar show significant power in obliquity (about 41 k.y.), whereas XARM/X shows significant power at 73 k.y. from stages 21 to 11. The 73-k.y. period in XARM/X is near the difference tone of obliquity and eccentricity: 1/43-1/102 = 1/69. Kar and XARM/X show power only in eccentricity from stages 11 to 1. X and Pfar show significant power in precession (about 18 and 22 k.y.) whereas CaC03ar has power at 34 k.y, which could be a combination of precession and obliquity. The shift in power of orbital parameters may by attributed to the effect of the about 413-k.y. signal of eccentricity.

Bulk density, and peat and net carbon accumulation of samples from Selwyn lake, Canada

Peat and net carbon accumulation rates in two sub-arctic peat plateaus of west-central Canada have been studied through geochemical analyses and accelerator mass spectrometry (AMS) radiocarbon dating. The peatland sites started to develop around 6600-5900 cal. yr BP and the peat plateau stages are characterized by Sphagnum fuscum peat alternating with rootlet layers. The long-term peat and net carbon accumulation rates for both profiles are 0.30-0.31 mm/yr and 12.5-12.7 gC/m**2/yr, respectively. These values reflect very slow peat accumulation (0.04-0.09 mm/yr) and net carbon accumulation (3.7-5.2 gC/m**2/yr) in the top rootlet layers. Extensive AMS radiocarbon dating of one profile shows that accumulation rates are variable depending on peat plateau stage. Peat accumulation rates are up to six times higher and net carbon accumulation rates up to four times higher in S. fuscum than in rootlet stages. Local fires represented by charcoal remains in some of the rootlet layers result in very low accumulation rates. High C/N ratios throughout most of the peat profiles suggest low degrees of decomposition due to stable permafrost conditions. Hence, original peat accretion has remained largely unaltered, except in the initial stages of peatland development when permafrost was not yet present.

Nd-Sr isotopes, diatom and biogenic opal content of Pliocene sediments from IODP Site 318-U1361

Warm intervals within the Pliocene epoch (5.33-2.58 million years ago) were characterized by global temperatures comparable to those predicted for the end of this century (Haywood and Valdes, doi:10.1016/S0012-821X(03)00685-X) and atmospheric CO2 concentrations similar to today (Seki et al., 2010, doi:10.1016/j.epsl.2010.01.037; Bartoli et al., 2011, doi:10.1029/2010PA002055; Pagani et al., 2010, doi:10.1038/ngeo724). Estimates for global sea level highstands during these times (Miller et al., 2012, doi:10.1130/G32869.1) imply possible retreat of the East Antarctic ice sheet, but ice-proximal evidence from the Antarctic margin is scarce. Here we present new data from Pliocene marine sediments recovered offshore of Adélie Land, East Antarctica, that reveal dynamic behaviour of the East Antarctic ice sheet in the vicinity of the low-lying Wilkes Subglacial Basin during times of past climatic warmth. Sedimentary sequences deposited between 5.3 and 3.3 million years ago indicate increases in Southern Ocean surface water productivity, associated with elevated circum-Antarctic temperatures. The geochemical provenance of detrital material deposited during these warm intervals suggests active erosion of continental bedrock from within the Wilkes Subglacial Basin, an area today buried beneath the East Antarctic ice sheet. We interpret this erosion to be associated with retreat of the ice sheet margin several hundreds of kilometres inland and conclude that the East Antarctic ice sheet was sensitive to climatic warmth during the Pliocene.