Multibeam Converter - a tool to create Ocean Data View import files from multibeam files

The software Multibeam Converter is a tool to convert files or folders of files (ascii/tab-separated data files with or without metaheader), downloaded from PANGAEA via the search engine or the data warehouse to the ODV import format, e.g. for visualization or further processing. MultibeamConverter is distributed as freeware for the operating systems Microsoft Windows, Apple OS X and Linux.

Split2Events - a tool for preparing PANGAEA import files

Split2Events is a software tool to split one file with data from several events into several files, one for each event. The resulting folder with a number of files can automaticaly be imported with the Massenimport routine of 4D. But it can also be useful to configure a complex import file outside 4D. Split2Events may also extract a list of unknown parameters and create a parameter import file.

PanConverter - a tool for data conversion and recalculation, written to convert special data collections to standard import format used by PANGAEA

Supported file formats: - CrossRef XML file(s) - TRiDaS (Tree Ring Data Standard, http://www.tridas.org). Example: hdl:10013/epic.42747.d001 - IMMA (International Maritime Meteorological Archive). Used by the project CLIWOC (García-Herrera et al. 2007, http://doi.pangaea.de/10.1594/PANGAEA.743343) - NOAA IOAS (International Ocean Atlas Series). Example: hdl:10013/epic.42747.d008 - SOCAT (Surface Ocean CO2 Atlas, Bakker et al. 2014, http://doi.pangaea.de/10.1594/PANGAEA.811776) - CHUAN (Comprehensive Historical Upper-Air Network, Stickler et al. 2013, http://doi.pangaea.de/10.1594/PANGAEA.821222). Example: hdl:10013/epic.42747.d003 - Thermosalinograph (TSG) data. Format developed by Gerd Rohardt. Example: hdl:10013/epic.42747.d002 - Columus GPS Data Logger V-900 format to KML or GPX. Example: hdl:10013/epic.42747.d006

TEST BINARY IMPORT

Der Müller und die fünf Räuber, Überfall²³

Analysis of soils from King George Island and Casey station, Antarctica

A comparative study was carried out on soils of the maritime (Arctowski, King George Island) and the continental (Casey, Wilkes Land) Antarctic. Soil sampIes are described for surface layers (0-10 cm) by their in situ temperature profiles as well as by field and laboratory analyses of grain sizes, pH and nutrient contents. Active cryoturbation is a main factor of mixing processes in surfaces with high silt and clay content. In both regions processes of podzolisation were recognized. Microclimatic conditions show the importance of small scale processes which are of special importance for freeze-thaw cycles. The distribution of nutrients and other inorganic components is rather homogeneous in regosols and leptosols. But in soils with organic top layers by lichen and moss cushions (crusts) accumulation occurs as well as displacement of metal ions into deeper layers (>10 cm). Histosols show patterns of brown soils. Special attention is given to the origin of nitrogen compounts and the different ways of import of other components (e.g. chloride) into the Antarctic system are discussed.

Middle Eocene to Miocene calcareous nannofossil of ODP Leg 125

During Ocean Drilling Program Leg 125, a thick sequence of middle Eocene to Pleistocene pelagic sediments, volcanogenic sediments, and predominantly extrusive volcanic rocks was recovered. Calcareous nannofossils were examined from 15 holes at nine sites, but Eocene to Miocene calcareous nannofossils were found only from Holes 782A, 784A, 786A, and 786B. In portions of Holes 786A and 786B, datable nannofossil oozes were found intercalated among volcanic flows. The nannofossil biostratigraphy of these holes indicates the presence of three well-defined hiatuses: within the lower Oligocene, between the upper Oligocene and middle Miocene, and between the middle and upper Miocene. An attempt was made to correlate the magnetochronological data with the first or last occurrences of the following species: Sphenolithus distentus, Reticulofenestra bisecta, Reticulofenestra reticulata, and Cyclicargolithus floridanus abisectus n. comb. The results indicate that the FO of Sphenolithus distentus can extend down to Zone CP16 (34.7 Ma), the LO of Reticulofenestra bisecta best defines the boundary between CP19a and CP19b (23.5 Ma), and the LO of Cyclicargolithus f. abisectus n. comb, can extend up to Subzone CN5a (12.5 Ma). No latest Oligocene Cyclicargolithus f. abisectus n. comb, acme was observed. Cyclicargolithus abisectus is considered a subspecies or variant of Cyclicargolithus floridanus because their LOs coincide. As a consequence of these observations, we have modified the definitions of Bukry's Subzones CP14a, CP14b, and CNla. Analyses of sediment-accumulation rates indicate that the rates increased gradually from the Eocene to Miocene. This is especially evident since the late Miocene in Hole 782A. In different parts of the Izu-Bonin forearc basin, however, the rate is not everywhere the same and appears to vary according to the import of volcanogenic materials.

Large-Area Photo-Mosaicking tool (LAPM tool)

This paper presents a new tool for large-area photo-mosaicking (LAPM tool). This tool was developed specifically for the purpose of underwater mosaicking, and it is aimed at providing end-user scientists with an easy and robust way to construct large photo-mosaics from any set of images. It is notably capable of constructing mosaics with an unlimited number of images on any modern computer (minimum 1.30 GHz, 2 GB RAM). The mosaicking process can rely on both feature matching and navigation data. This is complemented by an intuitive graphical user interface, which gives the user the ability to select feature matches between any pair of overlapping images. Finally, mosaic files are given geographic attributes that permit direct import into ArcGIS. So far, the LAPM tool has been successfully used to construct geo-referenced photo-mosaics with photo and video material from several scientific cruises. The largest photo-mosaic contained more than 5000 images for a total area of about 105,000 m**2. This is the first article to present and to provide a finished and functional program to construct large geo-referenced photo-mosaics of the seafloor using feature detection and matching techniques. It also presents concrete examples of photo-mosaics produced with the LAPM tool.

International Collection of JGOFS (Joint Global Ocean Flux Study), Volume 2: Integrated Data Sets (1989-2003)

The JGOFS International Collection Volume 2: Integrated Data Sets CD is a coherent, organised compilation of existing data sets produced by member countries which participated in JGOFS. In most cases, the data were gathered from the JGOFS International Collection, Volume 1: Discrete Datasets DVD. To produce Vol. 1 data were taken from the original sources and copied "as is" on the DVD. For Vol. 2 data and metadata have been harmonized using the conversion software PanTool and the import routine of PANGAEA checking for completeness of metadata and defining the relations between data and metadata. Prior to the import, data had performed a technical quality control, i.e. format and readability of the file, availability and combination of parameters and units, range of values.

(Table 1) Physical oceanography from several POLARSTERN cruises to the Arctic Ocean, 1993 - 2012

Freshwater in the Arctic Ocean plays an important role in the regional ocean circulation, sea ice, and global climate. From salinity observed by a variety of platforms, we are able, for the first time, to estimate a statistically reliable liquid freshwater trend from monthly gridded fields over all upper Arctic Ocean basins. From 1992 to 2012 this trend was 600±300 km**3/yr. A numerical model agrees very well with the observed freshwater changes. A decrease in salinity made up about two thirds of the freshwater trend and a thickening of the upper layer up to one third. The Arctic Ocean Oscillation index, a measure for the regional wind stress curl, correlated well with our freshwater time series. No clear relation to Arctic Oscillation or Arctic Dipole indices could be found. Following other observational studies, an increased Bering Strait freshwater import to the Arctic Ocean, a decreased Davis Strait export, and enhanced net sea ice melt could have played an important role in the freshwater trend we observed.

Oxygen consumption in Arctic sediments

Total sediment oxygen consumption rates (TSOC or Jtot), measured during sediment-water incubations, and sediment oxygen microdistributions were studied at 16 stations in the Arctic Ocean (Svalbard area). The oxygen consumption rates ranged between 1.85 and 11.2 mmol m**-2 d**-1, and oxygen penetrated from 5.0 to >59 mm into the investigated sediments. Measured TSOC exceeded the calculated diffusive oxygen fluxes (Jdiff) by 1.1-4.8 times. Diffusive fluxes across the sediment-water interface were calculated using the whole measured microprofiles, rather than the linear oxygen gradient in the top sediment layer. The lack of a significant correlation between found abundances of bioirrigating meiofauna and high Jtot/Jdiff ratios as well as minor discrepancies in measured TSOC between replicate sediment cores, suggest molecular diffusion, not bioirrigation, to be the most important transport mechanism for oxygen across the sediment-water interface and within these sediments. The high ratios of Jtot/Jdiff obtained for some stations were therefore suggested to be caused by topographic factors, i.e. underestimation of the actual sediment surface area when one-dimensional diffusive fluxes were calculated, or sampling artifacts during core recovery from great water depths. Measured TSOC correlated to water depth raised to the -0.4 to -0.5 power (TSOC = water depth**-0.4 to -0.5) for all investigated stations, but they could be divided into two groups representing different geographical areas with different sediment oxygen consumption characteristics. The differences in TSOC between the two areas were suggested to reflect hydrographic factors (such as ice coverage and import/production of reactive particulate organic material) related to the dominating water mass (Atlantic or polar) in each of the two areas. The good correlation between TSOC and water depth**-0.4 to -0.5 rules out any of the stations investigated to be topographic depressions with pronounced enhanced sediment oxygen consumption.

Global distributions of coccolithophores abundance and biomass - Gridded data product (NetCDF) - Contribution to the MAREDAT World Ocean Atlas of Plankton Functional Types

Coccolithophores are calcifying marine phytoplankton of the class Prymnesiophyceae. They are considered to play an import role in the global carbon cycle through the production and export of organic carbon and calcite. We have compiled observations of global coccolithophore abundance from several existing databases as well as individual contributions of published and unpublished datasets. We estimate carbon biomass using standardised conversion methods and provide estimates of uncertainty associated with these values. The database contains 58 384 individual observations at various taxonomic levels. This corresponds to 12 391 observations of total coccolithophore abundance and biomass. The data span a time period of 1929-2008, with observations from all ocean basins and all seasons, and at depths ranging from the surface to 500 m. Highest biomass values are reported in the North Atlantic, with a maximum of 501.7 ?gCl-1. Lower values are reported for the Pacific (maximum of 79.4 ?gCl-1) and Indian Ocean (up to 178.3 ?gCl-1). Coccolithophores are reported across all latitudes in the Northern Hemisphere, from the Equator to 89degN, although biomass values fall below 3 ?gCl-1 north of 70degN. In the Southern Hemisphere, biomass values fall rapidly south of 50degS, with only a single non-zero observation south of 60degS. Biomass values show a clear seasonal cycle in the Northern Hemisphere, reaching a maximum in the summer months (June-July). In the Southern Hemisphere the seasonal cycle is less evident, possibly due to a greater proportion of low-latitude data.