(Table S2) Cell concentrations of individual and combined Alexandrium spp. and phylogenetic groups as obtained by qPCR assay and Utermöhl counts, as well as particulate PSP toxin concentrations from discrete water depths

Molecular methods provide promising tools for routine detection and quantification of toxic microalgae in plankton samples. To this end, novel TaqMan minor groove binding probes and primers targeting the small (SSU) or large (LSU) ribosomal subunit (rRNA) were developed for two species of the marine dinoflagellate genus Alexandrium (A. minutum, A. tamutum) and for three groups/ribotypes of the A. tamarense species complex: Group I/North American (NA), Group II/Mediterranean (ME) and Group III/Western European (WE). Primers and probes for real-time quantitative PCR (qPCR) were species-specific and highly efficient when tested in qPCR assays for cross-validation with pure DNA from cultured Alexandrium strains. Suitability of the qPCR assays as molecular tools for the detection and estimation of relative cell abundances of Alexandrium species and groups was evaluated from samples of natural plankton assemblages along the Scottish east coast. The results were compared with inverted microscope cell counts (Utermöhl technique) of Alexandrium spp. and associated paralytic shellfish poisoning (PSP) toxin concentrations. The qPCR assays indicated that A. tamarense (Group I) and A. tamutum were the most abundant Alexandrium taxa and both were highly positively correlated with PSP toxin content of plankton samples. Cells of A. tamarense (Group III) were present at nearly all stations but in low abundance. Alexandrium minutum and A. tamarense (Group II) cells were not detected in any of the samples, thereby arguing for their absence from the specific North Sea region, at least at the time of the survey. The sympatric occurrence of A. tamarense Group I and Group III gives further support to the hypothesis that the groups/ribotypes of the A. tamarense species complex are cryptic species rather than variants belonging to the same species.

Chemical and isotopic compositions of rocks and minerals from the Palenyi Island, Por'ya Guba (Bay), White Sea

Hypersthene-garnet-sillimanite-quartz enclaves were studied in orthopyroxene-plagioclase and orthopyroxene-clinopyroxene crystalline schists and gneisses from shear zones exposed in the Palenyi Island within the Early Proterozoic Belomorian Mobile Belt. Qualitative analysis of mineral assemblages indicates that these rocks were metamorphosed to the granulite facies (approximately 900°C and 10-11 kbar). Oxygen isotopic composition was determined in rock-forming minerals composing zones of the enclaves of various mineral and chemical composition. Closure temperatures of the isotopic systems obtained by methods of oxygen isotopic thermometry are close to values obtained with mineralogical geothermometers (garnet-orthopyroxene and garnet-biotite) and correspond to the high-temperature granulite facies (860-900°C). Identified systematic variations in d18O values were determined in the same minerals from zones of different mineral composition. Inasmuch as these zones are practically in contact with one another, these variations in d18O cannot be explained by primary isotopic heterogeneity of the protolith. Model calculations of the extent and trend of d18O variations in minerals suggest that fluid-rock interaction at various integral fluid/rock ratios in discrete zones was the only mechanism that could generate the zoning. This demonstrates that focused fluid flux could occur in lower crustal shear zones. Preservation of high-temperature isotopic equilibria of minerals testifies that the episode of fluid activity at the peak of metamorphism was very brief.

Geotechnical properties of Lau Basin sediments

Distribution of pore space and degree of cementation appear to be the main factors controlling the permeability of sediments retrieved from the Lau Basin. The undisturbed microfabrics of two lithologies, nannofossil ooze and vitric sandy silt, commonly found at Holes 834A, 835A, 838A, and 839Aof Leg 135 were examined by scanning electron microscopy equipped with energy dispersive X-ray spectral analysis and image analysis systems. The results of these analyses were compared with laboratory determinations of porosity, grain-size distribution, and permeability on discrete samples from the same sediment depths. The permeability of the vitric sandy silt is 3-5 orders of magnitude higher than the nannofossil ooze samples. The porosity of nannofossil ooze ranges from 6% to 12% greater than the porosity of vitric sandy silt, which partially reflects the finer texture of nannofossil ooze. Although the correlation of higher porosity with lower permeability is not surprising, factors other than simply grain-size distribution must be invoked to explain the large differences in permeability found in these samples.

A numerical discrete element study on the influence of an embedded viscoelastic-plastic layer at different viscosity values

The major aim of this study was to examine the influence of an embedded viscoelastic-plastic layer at different viscosity values on accretionary wedges at subduction zones. To quantify the effects of the layer viscosity, we analysed the wedge geometry, accretion mode, thrust systems and mass transport pattern. Therefore, we developed a numerical 2D 'sandbox' model utilising the Discrete Element Method. Starting with a simple pure Mohr Coulomb sequence, we added an embedded viscoelastic-plastic layer within the brittle, undeformed 'sediment' package. This layer followed Burger's rheology, which simulates the creep behaviour of natural rocks, such as evaporites. This layer got thrusted and folded during the subduction process. The testing of different bulk viscosity values, from 1 × 10**13 to 1 × 10**14 (Pa s), revealed a certain range where an active detachment evolved within the viscoelastic-plastic layer that decoupled the over- and the underlying brittle strata. This mid-level detachment caused the evolution of a frontally accreted wedge above it and a long underthrusted and subsequently basally accreted sequence beneath it. Both sequences were characterised by specific mass transport patterns depending on the used viscosity value. With decreasing bulk viscosities, thrust systems above this weak mid-level detachment became increasingly symmetrical and the particle uplift was reduced, as would be expected for a salt controlled forearc in nature. Simultaneously, antiformal stacking was favoured over hinterland dipping in the lower brittle layer and overturning of the uplifted material increased. Hence, we validated that the viscosity of an embedded detachment strongly influences the whole wedge mechanics, both the respective lower slope and the upper slope duplex, shown by e.g. the mass transport pattern.

An environmental magnetic study, sedimentological and numerical methods around Tauranga Harbour, New Zealand

Magnetic iron minerals are widespread and indicative sediment constituents in estuarine, coastal and shelf systems. We combine environmental magnetic, sedimentological and numerical methods to identify magnetite-enriched placer-like zones in a complex coastal system and delineate their formation mechanisms. Magnetic susceptibility and remanence measurements on 245 surficial sediment samples collected in and around Tauranga Harbour, the largest barrier-enclosed tidal estuary of New Zealand, reveal several discrete enrichment zones controlled by local hydrodynamic conditions. Active magnetite enrichment takes place in tidal channels, which feed into two coast-parallel nearshore magnetite-enriched belts centered at water depths of 6-10 m and 10-20 m. A close correlation between magnetite content and magnetic grain size was found, where higher susceptibility values are associated within coarser magnetic crystal sizes. Two key mechanisms for magnetite enrichment are identified. First, tide-induced residual currents primarily enable magnetite enrichment within the estuarine channel network. A coast-parallel, fine sand magnetite enrichment belt in water depths of less than 10 m along the barrier island has a strong decrease in magnetite content away from the southern tidal inlet and is apparently related to active coast-parallel transport combined with mobilizing surf zone processes. A second, less pronounced, but more uniform magnetite enrichment belt at 10-20 m water depth is composed of non-mobile, medium-coarse-grained relict sands, which have been reworked during post-glacial sea level transgression. We demonstrate the potential of magnetic methods to reveal and differentiate coastal magnetite enrichment patterns and investigate their formative mechanisms.

Benthic foraminifera in Tertiary sediments of DSDP Leg 90 holes

Eocene through Pliocene benthic foraminifers were examined from seven sites located at middle and lower bathyal depths on the Lord Howe Rise in the Tasman Sea, from another site at lower bathyal depths in the Coral Sea, and from a site in the intermediate-depth, hemipelagic province of the Chatham Rise, east of southern New Zealand. Age-related, depth-related, and bioprovincial faunal variations are documented in this chapter. One new species, Rectuvigerina tasmana, is named. The paleoecologic indications of several key groups, including the miliolids, uvigerinids, nuttallitids, and cibicidids, are combined with sedimentologic and stable isotopic tracers to interpret paleoceanographic changes in the Tasman Sea. Because the total stratigraphic ranges of many bathyal benthic foraminifers are not yet known, most endpoints in the Tasman Sea are considered ecologically controlled events. The disappearances of Uvigerina rippensis and Cibicidoidesparki and the first appearances of U. pigmaea, Sphaeroidina bulloides, and Rotaliatina sulcigera at the Eocene/Oligocene boundary can be considered evolutionary events, as also can the first appearance of Cibicides wuellerstorfi in Zone NN5. Species which are restricted to the lower bathyal zone except during discrete pulses, most of which are related to the development of glacial conditions, include Melonis pompilioides, M. sphaeroides, Pullenia quinqueloba, Nuttallides umbonifera, and U. hispido-costata. Middle bathyal indigenes include U. spinulosa, U. gemmaeformis, Ehrenbergina marwicki, R. sulcigera, and all rectuvigerinids except Rectuvigerina spinea. Although the miliolids first occurred at lower bathyal depths, they were more common in the middle bathyal zone. Although the Neogene hispido-costate uvigerinids first developed at lower bathyal depths and at higher middle latitude sites, in the later Neogene this group migrated to shallower depths and became predominant also in the middle bathyal zone. Despite the relatively similar sedimentologic settings at the six middle bathyal Tasman sites, there was extensive intrageneric and intraspecific geographic variation. Mililiolids, strongly ornamented brizalinids, bolivinitids, Bulimina aculeata, Osangularia culter, and strongly porous morphotypes were more common at higher latitudes. Osangularia bengalensis, striate brizalinids such as Brizalina subaenariensis, Gaudryina solida, osangularids in general, and finely porous morphotypes were more common in the subtropics. There was strong covariance between faunas at lower middle latitude, lower bathyal Site 591, and higher middle latitude, middle bathyal Site 593. The following oceanographic history of the Tasman Sea is proposed; using the stable isotopic record as evidence for glacials and examining the ecologic correlations between (1) miliolids and carbonate saturation, (2) nuttallitids and undersaturated, cooled, or "new" water masses, (3) uvigerinids with high organic carbon in the sediment and high rates of sediment accumulation, and (4) cibicidids and terrestrial organic carbon. The glacial located near the Eocene/Oligocene boundary is characterized by the penetration of cooler, more corrosive waters at intermediate depths in high southern latitudes. This may have caused overturn, upwelling pulses, in other Tasman areas. The development of Neogenelike conditions began in the late Oligocene (Zone NP24/NP25) with the evolution of several common Neogene species. A large number of Paleogene benthics disappeared gradually through the course of the early Miocene, which was not well preserved at any Tasman site. Corrosive conditions shallowed into the middle bathyal zone in several pulses during the early Miocene. The development of glacial conditions in the middle Miocene was accompanied by major changes throughout the Tasman Sea. Sediment accumulation rates increased and high-productivity faunas and corrosive conditions developed at all but the lowest-latitude Site 588. This increase in productivity and accumulation rate is attributed to the eutrophication of Antarctic water masses feeding Tasman current systems, as well as to invigorated circulation in general. It overlaps with the beginning of the Pacific High-productivity Episode (10-5 Ma). During the latest Miocene glacial episode, corrosive conditions developed at lower bathyal depths, while cooler water and lower nutrient levels shallowed to middle bathyal depths. Lower input of terrestrial organic carbon may be related to the lower nutrient levels of this time and to the termination of the Pacific High-productivity Episode. The moderate glacial episode during the mid-Pliocene (Zone NN15/NN16, ~3.2 Ma) corresponds to a decline in sediment accumulation rates and a reorganization of faunas unlike that of all other times. New genera proliferate and indices for cool, noncorrosive conditions and high organic carbon expand throughout the middle bathyal zone coeval with the sedimentation rate decreases. By the latest Pliocene (about 2.5 Ma), however, during another glacial episode, faunal patterns typical of this and later glacials develop throughout the Tasman Sea. Benthic foraminiferal patterns suggest increased input of terrestrial organic matter to Tasman Sea sediments during this episode and during later glacials.

Discrete carbonate chemistry measured during the M87/1 cruise in April 2012

The track of the cruise, and the location of the different stations cover a large range of water masses, many of which take part in the exchange across the Greenland-Scotland Ridge, and of importance for the biogeochemical fluxes in the region. These water masses are of very different origins, which can be observed in the concentration of the different biogeochemical parameters. The concentrations are a result of the combination of the physical and biogeochemical environment in each formation region, and the processes acting on the water masses as they are transported away from the formation areas. The aim of the biogeochemistry measurements was to achieve a better understanding of the strength and variability of the biological carbon pump in the North Atlantic and Nordic Seas.

Records of past mid-depth ventilation: Cretaceous ocean anoxic event 2 vs. recent oxygen minimum zones

Present day oceans are well ventilated, with the exception of mid-depth oxygen minimum zones (OMZs) under high surface water productivity, regions of sluggish circulation, and restricted marginal basins. In the Mesozoic, however, entire oceanic basins transiently became dysoxic or anoxic. The Cretaceous ocean anoxic events (OAEs) were characterised by laminated organic-carbon rich shales and low-oxygen indicating trace fossils preserved in the sedimentary record. Yet assessments of the intensity and extent of Cretaceous near-bottom water oxygenation have been hampered by deep or long-term diagenesis and the evolution of marine biota serving as oxygen indicators in today's ocean. Sedimentary features similar to those found in Cretaceous strata were observed in deposits underlying Recent OMZs, where bottom-water oxygen levels, the flux of organic matter, and benthic life have been studied thoroughly. Their implications for constraining past bottom-water oxygenation are addressed in this review. We compared OMZ sediments from the Peruvian upwelling with deposits of the late Cenomanian OAE 2 from the north-west African shelf. Holocene laminated sediments are encountered at bottom-water oxygen levels of < 7 µmol/kg under the Peruvian upwelling and < 5 µmol/kg in California Borderland basins and the Pakistan Margin. Seasonal to decadal changes of sediment input are necessary to create laminae of different composition. However, bottom currents may shape similar textures that are difficult to discern from primary seasonal laminae. The millimetre-sized trace fossil Chondrites was commonly found in Cretaceous strata and Recent oxygen-depleted environments where its diameter increased with oxygen levels from 5 to 45 µmol/kg. Chondrites has not been reported in Peruvian sediments but centimetre-sized crab burrows appeared around 10 µmol/kg, which may indicate a minimum oxygen value for bioturbated Cretaceous strata. Organic carbon accumulation rates ranged from 0.7 and 2.8 g C /cm2 /kyr in laminated OAE 2 sections in Tarfaya Basin, Morocco, matching late Holocene accumulation rates of laminated Peruvian sediments under Recent oxygen levels below 5 µmol/kg. Sediments deposited at > 10 µmol/kg showed an inverse exponential relationship of bottom-water oxygen levels and organic carbon accumulation depicting enhanced bioirrigation and decomposition of organic matter with increased oxygen supply. In the absence of seasonal laminations and under conditions of low burial diagenesis, this relationship may facilitate quantitative estimates of palaeo-oxygenation. Similarities and differences between Cretaceous OAEs and late Quaternary OMZs have to be further explored to improve our understanding of sedimentary systems under hypoxic conditions.