Coccolithophore size, abundance and calcification across Drake Passage (Southern Ocean), 2009

This data was collected during a cruise across Drake Passage in the Southern Ocean in February 2009. This data consists of coccolithophore abundance, calcification and primary production rates, carbonate chemistry parameters and ancillary data of macronutrients, chlorophyll-a, average mixed layer irradiance, daily irradiance above the sea surface, euphotic and mixed layer depth, temperature and salinity.

Abundance estimates of diatoms in ODP Leg 207 sediments

Twenty-eight core catcher samples were provided to the author by the shipboard party for evaluation of fossil diatoms. Samples are from Ocean Drilling Program Leg 207 Holes 1257A, 1257B, 1257C, and 1258A. The samples range from 50 to 112 meters below the seafloor (mbsf) at Site 1257 and from ~22 to 60 mbsf at Site 1258. At Site 1257, samples range in age from middle Eocene (foraminifer Zone P14-13) to late Paleocene (mid-foraminifer Zone P4). At Site 1258, the samples range from middle Eocene (foraminifer Zone P11) to early Eocene (foraminifer Zone P5) according to the preliminary biostratigraphic reports (Erbacher, Mosher, Malone, et al., 2004, doi:10.2973/odp.proc.ir.207.2004). All samples were processed at Florida State University Antarctic Research Facility. Treatment included acidization and sieving through stacked 38- and 63-µm sieves. Strew slides were made from each fraction and the catcher pan. A Zeiss Photoscope II microscope was used for examination of the prepared slides. Samples from Holes 1257A, 1257B, and 1257C showed that most of the samples are barren of siliceous microfossils. Only a few radiolarians and fragments of radiolarians were observed.

Seawater carbonate chemistry, calcification rate, oxygen production, maximum quantum yield, symbiont density, chlorophyll concentration and crystal width of Halimeda macroloba, Halimeda cylindracea and Marginopora vertebralis during experiments, 2011

The effects of elevated CO2 and temperature on photosynthesis and calcification in the calcifying algae Halimeda macroloba and Halimeda cylindracea and the symbiont-bearing benthic foraminifera Marginopora vertebralis were investigated through exposure to a combination of four temperatures (28°C, 30°C, 32°C, and 34°C) and four CO2 levels (39, 61, 101, and 203 Pa; pH 8.1, 7.9, 7.7, and 7.4, respectively). Elevated CO2 caused a profound decline in photosynthetic efficiency (FV : FM), calcification, and growth in all species. After five weeks at 34°C under all CO2 levels, all species died. Chlorophyll (Chl) a and b concentration in Halimeda spp. significantly decreased in 203 Pa, 32°C and 34°C treatments, but Chl a and Chl c2 concentration in M. vertebralis was not affected by temperature alone, with significant declines in the 61, 101, and 203 Pa treatments at 28°C. Significant decreases in FV : FM in all species were found after 5 weeks of exposure to elevated CO2 (203 Pa in all temperature treatments) and temperature (32°C and 34°C in all pH treatments). The rate of oxygen production declined at 61, 101, and 203 Pa in all temperature treatments for all species. The elevated CO2 and temperature treatments greatly reduced calcification (growth and crystal size) in M. vertebralis and, to a lesser extent, in Halimeda spp. These findings indicate that 32°C and 101 Pa CO2, are the upper limits for survival of these species on Heron Island reef, and we conclude that these species will be highly vulnerable to the predicted future climate change scenarios of elevated temperature and ocean acidification.

pH and calcium change in the microenvironment of a benthic foraminifer (Ammonia sp.) and its size during experiments

Calcareous foraminifera are well known for their CaCO3 shells. Yet, CaCO3 precipitation acidifies the calcifying fluid. Calcification without pH regulation would therefore rapidly create a negative feedback for CaCO3 precipitation. In unicellular organisms, like foraminifera, an effective mechanism to counteract this acidification could be the externalization of H+ from the site of calcification. In this study we show that a benthic symbiont-free foraminifer Ammonia sp. actively decreases pH within its extracellular microenvironment only while precipitating calcite. During chamber formation events the strongest pH decreases occurred in the vicinity of a newly forming chamber (range of gradient about 100 µm) with a recorded minimum of 6.31 (< 10 µm from the shell) and a maximum duration of 7 h. The acidification was actively regulated by the foraminifera and correlated with shell diameters, indicating that the amount of protons removed during calcification is directly related to the volume of calcite precipitated. The here presented findings imply that H+ expulsion as a result of calcification may be a wider strategy for maintaining pH homeostasis in unicellular calcifying organisms.

North Atlantic (Rockall Plateau) coccolith assemblage data for MIS 5 of ODP Hole 162-980B

Calcareous nannoplankton analyses on late quaternary sediments from the eastern North Atlantic ODP Site 980 (55°29'N, 14°42'W) provide detailed insight into palaeoceanographic and palaeoclimatic changes that occurred throughout the Termination II and the adjacent interglacial of the Marine Isotope Stage (MIS) 5. This study presents the development of the coccolith assemblage throughout the interglacial MIS 5 towards the beginning of the glacial MIS 4 in the vicinity of the Rockall Plateau and investigates and characterises the impact of climatic and environmental variations on the coccolith assemblage distribution between 135 and 65 ky. In general, the coccolith assemblage is dominated by Gephyrocapsa muellerae and Emiliania huxleyi, whilst significant changes in palaeoceanographic and palaeoclimatic conditions are mainly shown by variations of subordinate species. A drastic increase in coccolith accumulation rates and a change from a less to a higher diverse species assemblage indicate a rapid increase in surface water temperatures during the onset of MIS 5 from c. 127.5 ky on. Highest coccolith numbers, high numbers of taxa and a large diversity indicate highest coccolithophore primary productivity and peak interglacial conditions during MIS 5.5, which are due to the high influence of relatively warm surface water to this region. Coccolith numbers peak again around 120 ky and decline afterwards but stay above glacial levels. The two cooling events of MIS 5.4 and 5.2 interrupt the generally warm conditions and are indicated by lowered coccolith numbers, a drop of thermophile species and a reduction of the species diversity. Decreasing coccolith numbers and a slightly reduced diversity indicate that environmental conditions deteriorated towards the onset of MIS 4. The analysis of the coccolith assemblage reveals that not only the stadial events MIS 5.4 and 5.2 are characterised by colder conditions, but furthermore confirms the upcoming notion that MIS 5.5 was terminated by a slight short-term cooling of the surface water which occurred around 124 ky.

Relative abundance of prokaryotes in sediments of the Håkon Mosby mud volcano (Z1-Z3, all habitats)

CARD-FISH was performed as previously described in Ruff et al., (2013; doi:10.1371/journal.pone.0072627) with the following modifications. 4-6 µl of 25-fold diluted sediment were used for filtration. Archaeal cell walls were permeabilized with 0.1M HCl for 2 min to detect ANME-3 cells, or Proteinase K solution (15 µg ml-1 (Merck, Darmstadt, Germany) in 0.05 M EDTA (pH 8), 0.1 M Tris-HCl (pH 8), 0.5 M NaCl) for 2-4 min at room temperature for all other archaea. Bacterial cell walls were permeabilized with lysozyme solution (1000kU/ml) for 60 min at 37°. Cells were stained with DAPI (1µg/ml), embedded in mounting medium and counted in 40-60 independent microscopic fields using an Axiophot II epifluorescence microscope (Carl Zeiss, Jena, Germany).

Surface seawater carbonate chemistry, nutrients and phytoplankton community composition on a transect between North Sea and Arctic Ocean, 2008

This data was collected during the 'ICE CHASER' cruise from the southern North Sea to the Arctic (Svalbard) in July-Aug 2008. This data consists of coccolithophore abundance, calcification and primary production rates, carbonate chemistry parameters and ancillary data of macronutrients, chlorophyll-a, average mixed layer irradiance, daily irradiance above the sea surface, euphotic and mixed layer depth, temperature and salinity.

Seawater carbonate chemistry and benthic foraminifera Ammonia sp. mass, size, and growth rate during experiments, 2013

About 30% of the anthropogenically released CO2 is taken up by the oceans; such uptake causes surface ocean pH to decrease and is commonly referred to as ocean acidification (OA). Foraminifera are one of the most abundant groups of marine calcifiers, estimated to precipitate ca. 50 % of biogenic calcium carbonate in the open oceans. We have compiled the state of the art literature on OA effects on foraminifera, because the majority of OA research on this group was published within the last three years. Disparate responses of this important group of marine calcifiers to OA were reported, highlighting the importance of a process-based understanding of OA effects on foraminifera. We cultured the benthic foraminifer Ammonia sp. under a range of carbonate chemistry manipulation treatments to identify the parameter of the carbonate system causing the observed effects. This parameter identification is the first step towards a process-based understanding. We argue that CO3 is the parameter affecting foraminiferal size-normalized weights (SNWs) and growth rates. Based on the presented data, we can confirm the strong potential of Ammonia sp. foraminiferal SNW as a CO3 proxy.