Benthic anammox and dentrification rates measured in a slurry incubation experiments at four different stations in the Arabian Sea off Pakistan during the METEOR cruise M74/2 in 2007

Vertical distributions of benthic denitrification and anammox rates within the sediment were estimated from slurry incubation experiments. Rates were used to calculate the contribution of anammox and denitrification to the total N-loss. Briefly, MUC sediment cores were sliced in 2 cm intervals and the sediment was diluted and incubated with degassed bottom water in a gas tight bag. After pre-incubating the bags for 2 h, 15N-labeled substrates were injected into the bags and the slurries were thoroughly mixed. Incubations were performed in the dark at in situ temperatures. The N2 isotope ratio (28N2, 29N2, and 30N2) was determined by gas chromatography-isotopic ratio mass spectrometry (VG Optima, Micromass) and calculated according to Kuypers et al. (2005) and Holtappels et al. (2011), respectively.Furthermore, total organic carbon and nitrogen concentrations were measured of core sediment layers corresponding to those used for rate measurements. Concentrations of organic carbon and nitrogen were determined by combustion/gas chromatography (Carlo Erba NA-1500 CNS analyzer) of dried sediment samples after acidification. The same sediment layer were also used to extract nucleic acids. The concentrations of the DNA in the samples were measured spectrophotometrically with a NanoDrop instrument (Thermo Fisher Scientific Inc.). The biomarker functional gene nirS, encoding the cd1-containing nitrite reductase, for both denitrifiers and marine anammox bacteria were quantified with real-time PCR, using the primers cd3aF/R3cd (5'-GTSAACGTSAAGGARACSGG-3' (Michotey et al., 2000)/5'-GASTTCGGRTGSGTCTTGA-3'; Throback et al., 2004) and Scnir372F/Scnir845R (5'-TGTAGCCAGCATTGTAGCGT-3'/5'-TCAAGCCAGACCCATTTGCT-3'; Lam et al., 2009).

Mineralogy of serpentine muds of ODP Leg 125 holes (Table 1)

Large serpentinite seamounts are common in the forearc regions between the trench axis and the active volcanic fronts of the Mariana and Izu-Bonin intraoceanic arcs. The seamounts apparently form both as mud volcanoes, composed of unconsolidated serpentine mud flows that have entrained metamorphosed ultramafic and mafic rocks, and as horst blocks, possibly diapirically emplaced, of serpentinized ultramafics partially draped with unconsolidated serpentine slump deposits and mud flows. The clayand silt-sized serpentine recovered from three sites on Conical Seamount on the Mariana forearc region and from two sites on Torishima Forearc Seamount on the Izu-Bonin forearc region is composed predominantly of chrysotile, brucite, chlorite, and clays. A variety of accessory minerals attest to the presence of unusual pore fluids in some of the samples. Aragonite, unstable at the depths at which the serpentine deposits were drilled, is present in many of the surficial cores from Conical Seamount. Sjogrenite minerals, commonly found as weathering products of serpentine resulting from interaction with groundwater, are found in most of the samples. The presence of aragonite and carbonate-hydroxide hydrate minerals argues for interaction of the serpentine deposits with fluids other than seawater. There are numerous examples of sedimentary serpentinite deposits exposed on land that are very similar to the deposits recovered from the serpentine seamounts drilled on ODP Leg 125. We suggest that Conical Seamount may be a type locality for the study of in situ formation of many of these sedimentary serpentinite bodies. Further, we suggest that both the deposits drilled on Conical Seamount and on Torishima Forearc Seamount demonstrate that serpentinization can continue in situ within the seamounts through interaction of the serpentine deposits with both seawater and subduction-related fluids.

Geochemistry of the oceanic crust from ocean drilling samples

This book presents new data on chemical and mineral compositions and on density of altered and fresh igneous rocks from key DSDP and ODP holes drilled on the following main tectonomagmatic structures of the ocean floor: 1. Mid-ocean ridges and abyssal plains and basins (DSDP Legs 37, 61, 63, 64, 65, 69, 70, 83, and 91 and ODP Legs 106, 111, 123, 129, 137, 139, 140, 148, and 169); 2. Seamounts and guyots (DSDP Legs 19, 55, and 62 and ODP Legs 143 and 144); 3. Intraplate rises (DSDP Legs 26, 33, 51, 52, 53, 72, and 74 and ODP Legs 104, 115, 120, 121, and 183); and 4. Marginal seas (DSDP Legs 19, 59, and 60 and ODP Legs 124, 125, 126, 127, 128, and 135). Study results of altered gabbro from the Southwest Indian Ridge (ODP Leg 118) and serpentinized ultramafic rocks from the Galicia margin (ODP Leg 103) are also presented. Samples were collected by the authors from the DSDP/ODP repositories, as well as during some Glomar Challenger and JOIDES Resolution legs. The book also includes descriptions of thin sections, geochemical diagrams, data on secondary mineral assemblages, and recalculated results of chemical analyses with corrections for rock density. Atomic content of each element can be quantified in grams per standard volume (g/1000 cm**3). The suite of results can be used to estimate mass balance, but parts of the data need additional work, which depends on locating fresh analogs of altered rocks studied here. Results of quantitative estimation of element mobility in recovered sections of the upper oceanic crust as a whole are shown for certain cases: Hole 504B (Costa Rica Rift) and Holes 856H, 857C, and 857D (Middle Valley, Juan de Fuca Ridge).