Respiration rate of Microsetella norvegica collected during James Cook cruise JC087

Respiration of Microsetella norvegica was measured at PAP site during two days, using a UNISENSE microrespiration system and microelectrodes for O2. 10-20 starved Microsetella individuals were carefully placed into 2-ml respiration chambers in filtered sea water, and their respiration was measured for 20 min. The respiration rate was calculated based on the slope of the decrease in oxygen against time in the respiration chamber containing Microsetella, compared to the control where only filtered seawater was present. In total 18 measurements were conducted.

Phototrophic carbon fixation rates measured in water samples from the Porcupine Abyssal Plains during James Cook cruise JC087

Water samples were collected from pre-dawn CTD casts at 5 depths corresponding to 55%, 20%, 7%, 5% and 1% of surface irradiance. 1 litre water samples wrapped with optical filters to replicate light levels. Spiked with 200 µL of 13C labelled sodium bicarbonate. After 24 hourse filtered through ashed 25mm GF/F (Whatman) filters, rinsed with HCl solution (1-2%) and stored at -20oC. On shore encapsulated in tin capsules and analysed for 13C isotopic enrichment. Carbon uptake rates calculated using the equations of Fernandez et al. (2005).

Nutrients and oxygen concentrations measured in water samples from the North Atlantic during the James Cook cruise JC087 in March 2013

Analysis for micro-molar concentrations of nitrate and nitrite, nitrite, phosphate, silicate and ammonia was undertaken on a SEAL Analytical UK Ltd, AA3 segmented flow autoanalyser following methods described by Kirkwood (1996). Samples were drawn from Niskin bottles on the CTD into 15ml polycarbonate centrifuge tubes and kept refrigerated at approximately 4oC until analysis, which generally commenced within 30 minutes. Overall 23 runs with 597 samples were analysed. This is a total of 502 CTD samples, 69 underway samples and 26 from other sources. An artificial seawater matrix (ASW) of 40g/litre sodium chloride was used as the inter-sample wash and standard matrix. The nutrient free status of this solution was checked by running Ocean Scientific International (OSI) low nutrient seawater (LNS) on every run. A single set of mixed standards were made up by diluting 5mM solutions made from weighed dried salts in 1litre of ASW into plastic 250ml volumetric flasks that had been cleaned by washing in MilliQ water (MQ). Data processing was undertaken using SEAL Analytical UK Ltd proprietary software (AACE 6.07) and was performed within a few hours of the run being finished. The sample time was 60 seconds and the wash time was 30 seconds. The lines were washed daily with wash solutions specific for each chemistry, but comprised of MQ, MQ and SDS, MQ and Triton-X, or MQ and Brij-35. Three times during the cruise the phosphate and silicate channels were washed with a weak sodium hypochlorite solution.

Turbulence measurements performed in the North Atlantic during the James Cook cruise JC087, March 2013

During the cruise the turbulence probe MSS050 was used for microstructure measurements. The profiler is produced by Sea and Sun Technology GmbH in co-operation with ISW Wassermesstechnik. The probe was equipped with 2 velocity microstructure shear sensors, a microstructure temperature sensor, standard CTD sensors for precision measurements, a vibration control sensor, a two component tilt sensor, a fluorescence sensor and surface detection sensor (SD) to indicate the water surface hit at rising measurements. The sampling rate for all sensors is 1024 samples per second, the resolution 16 bit. During the MSS measurements, the ship was moving with speed approx. 0.5-1.0 knots with respect to the water against the wind. In order to take into account the intermittent nature of marine turbulence, repeated MSS measurements were carried out in bursts of typically 10 profiles per station. The measurement interval was approximately 7 (10) min for a profile to 140 (200) dbar. During JC87 cruise 8 series of turbulence measurements were conducted. Fluorescence data was obtained on the 5 of them.

Chlorophyll-a in gut from Microsetella norvegica and Oncaea collected during James Cook cruise JC087

Gut chlorophyll of Microsetella norvegica and Oncaea spp. was measured daily at the PAP site from 8th to 14th of June, 2013. Copepods were collected using a WP2 -type net with a mesh size of 50 µm. Immediately after, 40-70 adults and late copepodites of each species (with 2-3 replicate samples) were washed in filtered sea water, placed on CF/F filters and extracted in acetone. Chlorophyll-a on filters was analysed using standard methods.

Ex situ respiration rates measured in water column samples during the James Cook cruise JC087 in June 2013

Oxygen concentration and rate of change of oxygen were measured using the Unisense Oxygen Microsensor System. Water from different depth was taken from CTD attached niskin bottle. Measurements were conducted in 2 ml vials provided by Unisense and lasted for a minimum of two minutes after a stable rate was achieved. The sampling interval was 6 seconds. Transport containers, tubes and vials for measurements were covered with light proof black foil for dark-measurements.

Vertical distribution and abundance of small zooplankton from the James Cook cruise JC087

Zooplankton samples were collected daily at the PAP site, using a Multinet of the type Midi with 50 µm nets. 5 depth strata (1000-500, 500-300, 300-100, 100-50 and 50-0 m) were collected at each sampling. The samples were preserved in 2% borax bufferred formalin. Zooplankton were identified on a species / genus level including different life-stages and eggs; at least 400 individuals were counted for each sample. When present, 10 individuals of each species and life-stages (for copepods) were measured for their prosome or total length.

Carbon concentration and sinking velocity of particles measured during the James Cook cruise JC087, March 2013

Sinking organic particles were collected from the Porcupine Abyssal Plain in 2013. Collection was done using a marine snow catcher (MSC), which is essentially a large (95 L) settling column. The marine snow catcher is deployed to one depth, the water trapped inside and then brought to the surface and left to stand on deck for 2 hours during which time the particles settle down (or up) the MSC depending on their settling rate. The particles are then collected and due to position of collection from the snow catcher are determined as fast or slow sinking particles. Some fluxes are negative as they were positively buoyant and not sinking.

Annotated record of the detailed examination of Mn deposits in the Atlantic Ocean from cruises from R/V Atlantis II, R/V Knorr, R/V Melvin and R/V James M. Gilliss in 1980-1981

This report is Volume 3 of Descriptions of WHOI rock dredge samples. This series represents a major effort to catalog the rock dredge samples in the WHOI Sea Floor samples collection, and to disseminate this information throughout the scientific community. Volume 3 contains sample descriptions and station data for the dredge stations from five cruises during the period September 1978 through December 1980. The material in this and subsequent volumes of rock descriptions was largely prepared onboard ship by the participating scientists. Volume 3 was printed prior to volumes 1 and 2 because of the excellent documentation of the samples represented in this volume.