Liver proteome profiling of juvenile Chinese sturgeon (Acipenser sinensis) using GeLC-MS/MS approach

Chinese sturgeon (Acipenser sinensis), mainly distributed in the Yangtze River, has been listed as a grade I protected animal in China because of a dramatic decline in population owing to loss of natural habitat for reproduction and interference by human activities. Understanding the proteome profile of Chinese sturgeon liver would provide an invaluable resource for protecting and increasing the stocks of this species. In this study, we have analyzed proteome profiles of juvenile Chinese sturgeon liver using a one-dimensional gel electrophoresis coupled to LC-MS/MS approach. A total of 1059 proteins and 2084 peptides were identified. The liver proteome was found to be associated with diverse biological processes, cellular components and molecular functions. The proteome profile identified a variety of significant pathways including carbohydrate metabolism, fatty acid metabolism and amino acid metabolism pathways. It also established a network for protein biosynthesis, folding and catabolic processes. The proteome profile established in this study can be used for understanding the development of Chinese sturgeon and studying the molecular mechanisms of action under environmental or chemical stress, providing very useful omics information that can be applied to preserve this species.

(Table 1) Diagnostic characters of specimens of Marenzelleria bastropi sp. n., M. arctia, M. neglecta, M. viridis and M. wireni

Marenzelleria bastropi, a new species of Spionidae (Polychaeta) from the brackish water Currituck Sound, North Carolina, is described. The new species is characterized by the great number of chaetigers between the first neuro- and notopodial hooded hooks, the extension of the nuchal organ up to the end of chaetiger 2/middle of chaetiger 3 and the presence of about 60-90 branchiate chaetigers. Marenzelleria bastropi sp. nov. is closely related to M. neglecta (Sikorski and Bick, 2004) and Marenzelleria viridis (Verrill, 1873). Marenzelleria wireni Augener, 1913 is described here for the first time from western Spitsbergen. Adult specimens are investigated and compared with specimens from other areas of distribution. A key for subadult and adult specimens of all Marenzelleria species is provided.

Geochemistry and petrographic characters at DSDP Leg 58 Holes

Refractive index and chemical composition were determined for glass shards contained in more than 100 tephra layers in DSDP Leg 58 sediment cores collected in the Shikoku Basin, North Philippine Sea. The refractive index is consistent with chemical composition. Refractive index and total iron show a linear relationship. Tephra in Pleistocene and Pliocene sediments is mostly rhyolitic and dacitic (non-alkali), whereas tephra in the Miocene shows wide composition variations in the eastern part of the basin. Basaltic tephra is recognized in Miocene sediments at Sites 443 and 444, but not at Site 442, west of the other two sites. This indicates that the basaltic tephra came from eruption relatively close to those drill sites (perhaps the Kinan Seamounts and the Shichito-Iwo Jima volcanic arc), although the exact source has not been identified.

Appendix 1: List of cladistic characters published on ammonites

The file here provided, is the list of all characters that have been used in cladistic analysis on ammonoids published so far. It constitutes the base of a study which investigates practices in characters establishment. Find here after the abstract of the article that is associated to this file. Cladistics appears as one of the most useful method to reconstruct phylogeny of fossil taxa. However, ammonoids workers tend to sulk this method. The capital step of cladistic analysis is the recognition of homology hypothesis as clue to reconstruct monophyletic clades based on the sharing of derived traits. Previous authors have suggested that coding schemes are usually direct transcription of original taxa description. However, establishing a list of characters (i.e. a matrix taxa /characters) is a very different work compared to a compilation of diagnoses. How morphology is coded in ammonoids? How coding schemes are influenced by traditional descriptions / characters? Here, we review all cladistic analyses of ammonoids published in the literature to compare characters and the way authors have dealt with the treatment of continuous characters, polymorphism and ontogeny. Several barriers are usually invoked to justify that cladistics cannot be applied to reconstruct ammonoids phylogenies. We show that an appropriate use of improvements both on ammonoids' knowledge and cladistics methodology may overcome limitations usually invoked to perform cladistic analysis on ammonoids.

(Table B2) Relative abundances of diatom species used in the Canoco analysis at sediment surface samples from the Chinese inshore waters

Canonical correspondence analysis has been used to analyze and to visualize the relationships between the main species and selected environmental variables in a study of diatoms from surface sediment samples in Chinese inshore waters. The result shows that the diatom distribution in Chinese inshore waters is closely correlated with the environmental variables and that the measured environmental variables account for the major changes of the diatom composition. Winter sea-surface temperature (WST), winter sea-surface salinity (WSS), water depth and summer sea-surface salinity (SSS) play an important role for the diatom distribution. Among the environmental factors, winter sea-surface temperature is the most important, controlling the distribution of diatoms in the surface sediments in Chinese inshore waters, and therefore, it may be potentially reconstructed in palaeoceanographic studies. Three diatom assemblages are distinguished, representing environments with different hydrological characteristics. The temperate-water diatom assemblage may be used as an indicator of the coastal circulation system of Bohai Sea and Yellow Sea. While the warm-temperate water diatom assemblage is closely related to Shanghai-Zhejiang-Fujian coastal currents and Northern Bay coastal currents of South China Sea. The deep water diatom assemblage is a response to that the waters are less controlled by coastal currents, but are more influenced by open sea currents, such as Kuroshio.