Microbiota and Microsatellite genotypes of Pacific oysters stemming from three oyster bed in the Northern Wadden Sea

Background: Studies of oyster microbiomes have revealed that a limited number of microbes, including pathogens, can dominate microbial communities in host tissues such as gills and gut. Much of the bacterial diversity however remains underexplored and unexplained, although environmental conditions and host genetics have been implicated. We used 454 next generation 16S rRNA amplicon sequencing of individually tagged PCR reactions to explore the diversity of bacterial communities in gill tissue of the invasive Pacific oyster Crassostrea gigas stemming from genetically differentiated beds under ambient outdoor conditions and after a multifaceted disturbance treatment imposing stress on the host. Results: While the gill associated microbial communities in oysters were dominated by few abundant taxa (i.e. Sphingomonas, Mycoplasma) the distribution of rare bacterial groups correlated to relatedness between the hosts under ambient conditions. Exposing the host to disturbance broke apart this relationship by removing rare phylotypes thereby reducing overall microbial diversity. Shifts in the microbiome composition in response to stress did not result in a net increase in genera known to contain potentially pathogenic strains. Conclusion: The decrease in microbial diversity and the disassociation between population genetic structure of the hosts and their associated microbiome suggest that disturbance (i.e. stress) may play a significant role for the assembly of the natural microbiome. Such community shifts may in turn also feed back on the course of disease and the occurrence of mass mortality events in oyster populations.

Silicoflagellates of ODP Leg 119 samples

The occurrence of Quaternary and Oligocene silicoflagellates at two Ocean Drilling Program (ODP) Leg 119 Holes (736A and 744A) on the Kerguelen Plateau in the Southern Ocean was investigated to compare species distributions to Northern Hemisphere floras. This abstract gives the data determined (Tables 1 and 2) for 24 samples and few preliminary remarks. Quaternary assemblages of Hole 736A are noteworthy for the absences of key North Pacific zonal guide species such as Bachmannocena quadrangula, Dictyocha aculeata, Dictyocha subarctios, and Distephanus octangulatus (Bukry and Monechi, 1985). Other species such as Distephanus floridus, Distephanus speculum elongatus, and Mesocena octagona show limited ranges in Hole 736A and may help to subdivide the Quaternary locally. The late Oligocene assemblages of Hole 744A contain widely distributed species of Distephanus and Naviculopsis, which permit correlation to lower latitude assemblages. They also contain the high-latitude acme of Distephanus raupii which was first noted at Deep Sea Drilling Project (DSDP) Hole 278 (56°3.42'S, 160°04.29'E, water depth 3689 m) by Perch-Nielsen (1975) and Bukry (1975). Study of Hole 744A assemblages suggests that D. raupii developed from pentagonal Dictyocha deflandrei deflandrei. A final note on the Hole 744A assemblages is the brief late Oligocene acme (25%) of Dictyocha sp. aff. D. spinosa in Sample 119-744A-13H-4, 65-67 cm, which provides a direct correlation to the acme (16%) in DSDP Sample 29-278-31R-CC (Perch-Nielsen, 1975) in the Southern Ocean. Most of the taxonomy used in the tables is documented in earlier publications of the DSDP Initial Reports (see Bukry in Volumes 16, 35, 37, 40, 44, 49, 54, 67, 68, 69, 81, and 95). Also, see Loeblich et al. (1968) and Perch-Nielsen (1985) for extensive taxonomy and illustrations.

Range chart for Tertiary ostracodes from ODP Hole 101-628A (Table 1)

The Oligocene to Pliocene section from Hole 628A supplied about 100 species of Tertiary ostracodes. Deep-sea psychrospheric? species (Bradleya cf. dictyon, Agrenocythere cf. gosnoldia, Cardobairdia spp., Henryhowella sp., Cytheropteron spp., etc.) are present throughout the section. Starting in the Miocene, neritic species (Hulingsina sp., Puriana spp., Caudites spp., Loxoconcha fischeri, Cytherelloidea sp., etc.) dominate. Redeposition of these species from the continental shelf seems to be penecontemporaneous with sedimentation. Variations in the assemblages indicate biostratigraphic position. Species having an ecologic or stratigraphic importance are discussed and illustrated.

Biostratigraphical investigations of Lago d'Averno, near Naples

Remains of diatoms, molluscs, ostracods, foraminifera and pollen exines preserved in the sediments of Lago d'Averno, a volcanic lake in the Phlegrean Fields west of Naples, allowed us to reconstruct the changes in the ecological conditions of the lake and of the vegetation around it for the period from 800 BC to 800 AD. Lago d'Averno was at first a freshwater lake, temporarily influenced by volcanic springs. Salinity increased slowly during Greek times as a result of subsidence of the surrounding land. Saline conditions developed only after the lake was connected with the sea by a canal, when Portus Julius was built in 37 BC. The first post-Roman period of uplift ended with a short freshwater phase during the 7th century after Christ. Deciduous oakwoods around the lake was transformed into a forest of evergreen oaks in Greek times and thrived there - apparently almost uninfluenced by man - until it was felled, when the Avernus was incorporated into the new Roman harbour in 37 BC, to construct a shipyard and other military buildings there. Land-use was never more intense than during Roman times and weakest in Greek and Early Roman times, when the Avernus was considered a holy place, the entrance to the underworld.

Foraminiferal assemblage and statistical analysis of surface sediment samples from the Golfe d'Arguin, Mauritania

With the growing pressure of eutrophication in tropical regions, the Mauritian shelf provides a natural situation to understand the variability in mesotrophic assemblages. Site-specific dynamics occur throughout the 1200 m depth gradient. The shallow assemblages divide into three types of warm-water mesotrophic foraminiferal assemblages, which is not only a consequence of high primary productivity restricting light to the benthos but due to low pore water oxygenation, shelf geomorphology, and sediment partitioning. In the intermediate depth (approx. 500 m), the increase in foraminiferal diversity is due to the cold-water coral habitat providing a greater range of micro niches. Planktonic species characterise the lower bathyal zone, which emphasizes the reduced benthic carbonate production at depth. Although, due to the strong hydrodynamics within the Golf, planktonic species occur in notable abundances through out the whole depth gradient. Overall, this study can easily be compared to other tropical marine settings investigating the long-term effects of tropical eutrophication and the biogeographic distribution of carbonate producing organisms.