Diversity of zooplankton assemblages at Station L4, Western English Channel, measured using next generation DNA sequencing

Background: Zooplankton play an important role in our oceans, in biogeochemical cycling and providing a food source for commercially important fish larvae. However, difficulties in correctly identifying zooplankton hinder our understanding of their roles in marine ecosystem functioning, and can prevent detection of long term changes in their community structure. The advent of massively parallel Next Generation Sequencing technology allows DNA sequence data to be recovered directly from whole community samples. Here we assess the ability of such sequencing to quantify the richness and diversity of a mixed zooplankton assemblage from a productive monitoring site in the Western English Channel. Methodology/Principle Findings: Plankton WP2 replicate net hauls (200 µm) were taken at the Western Channel Observatory long-term monitoring station L4 in September 2010 and January 2011. These samples were analysed by microscopy and metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene using the 454 pyrosequencing platform. Following quality control a total of 419,042 sequences were obtained for all samples. The sequences clustered in to 205 operational taxonomic units using a 97% similarity cut-off. Allocation of taxonomy by comparison with the National Centre for Biotechnology Information database identified 138 OTUs to species level, 11 to genus level and 1 to order, <2.5% of sequences were classified as unknowns. By comparison a skilled microscopic analyst was able to routinely enumerate only 75 taxonomic groups. Conclusions: The percentage of OTUs assigned to major eukaryotic taxonomic groups broadly aligns between the metagenetic and morphological analysis and are dominated by Copepoda. However, the metagenetics reveals a previously hidden taxonomic richness, especially for Copepoda and meroplankton such as Bivalvia, Gastropoda and Polychaeta. It also reveals rare species and parasites. We conclude that Next Generation Sequencing of 18S amplicons is a powerful tool for estimating diversity and species richness of zooplankton communities.

Zooflagellate production in the Central Indian Ocean

Multiplication rate and production of zooflagellates were determined in the Central Indian Ocean. In the surface zone of the areas studied zooflagellate generation time ranged from 24 to 48 hours and production from 0.5 to 10.6 mg/m**3. The lowest multiplication rate was found at depth of 100 m (92 hours); no multiplication was found in water samples taken from depth of 120 m or below.

Composition of rocks and minerals from the Mid-Atlantic Ridge 5-7°N

The monograph summarizes geological and metallogenic data on the Mid-Atlantic Ridge obtained during research expeditions of the Geological Institute RAS in 2000-2003. Formation of the earth crust in the region, structure of the rift zone, structure of the newly discovered Bogdanov Fracture Zone, neotectonic deformations, metallogenic peculiarities, prospecting criteria of ocean ore mineralization are under consideration.