Microbiota and Microsatellite genotypes of Pacific oysters stemming from three oyster bed in the Northern Wadden Sea

Background: Studies of oyster microbiomes have revealed that a limited number of microbes, including pathogens, can dominate microbial communities in host tissues such as gills and gut. Much of the bacterial diversity however remains underexplored and unexplained, although environmental conditions and host genetics have been implicated. We used 454 next generation 16S rRNA amplicon sequencing of individually tagged PCR reactions to explore the diversity of bacterial communities in gill tissue of the invasive Pacific oyster Crassostrea gigas stemming from genetically differentiated beds under ambient outdoor conditions and after a multifaceted disturbance treatment imposing stress on the host. Results: While the gill associated microbial communities in oysters were dominated by few abundant taxa (i.e. Sphingomonas, Mycoplasma) the distribution of rare bacterial groups correlated to relatedness between the hosts under ambient conditions. Exposing the host to disturbance broke apart this relationship by removing rare phylotypes thereby reducing overall microbial diversity. Shifts in the microbiome composition in response to stress did not result in a net increase in genera known to contain potentially pathogenic strains. Conclusion: The decrease in microbial diversity and the disassociation between population genetic structure of the hosts and their associated microbiome suggest that disturbance (i.e. stress) may play a significant role for the assembly of the natural microbiome. Such community shifts may in turn also feed back on the course of disease and the occurrence of mass mortality events in oyster populations.

Nannofossil bioevents and biozones of ODP Holes 197-1203A and 197-1204A on Detroit Seamount

Calcareous nannofossils were studied in sedimentary successions recovered from two holes on the Detroit Seamount in the northwestern Pacific Ocean. Preservation of calcareous nannoflora assemblages varies from poor to good throughout the sediments recovered from both Holes 1203A and 1204A. Biostratigraphic investigation allowed the identification of 19 nannofossil zones in Hole 1203A and 7 in Hole 1204A. The sedimentary cover in Hole 1203A ranges from lower Eocene (Zone NP12) to upper Miocene (Zone NN9). The sedimentary interval investigated directly overlying the basalt recovered at Hole 1204A is late Campanian in age (Zones CC22-CC23), and the top of the section is middle Eocene (Zone NP15) in age. Major unconformities were observed in Hole 1204A between upper Campanian (Zones CC22-CC23) and lower Thanetian (Zone NP7) sediments and between upper Thanetian (Zone NP8) and upper Ypresian (Zone NP12) sediments.