(Table T1) Total procaryotes, and living bacteria and archaea in black shales of ODP Leg 207 sites

Subseafloor sediments harbor over half of all prokaryotic cells on Earth (Whitman et al., 1998). This immense number is calculated from numerous microscopic acridine orange direct counts (AODCs) conducted on sediment cores drilled during the Ocean Drilling Program (ODP) (Parkes et al., 1994, doi:10.1038/371410a0, 2000, doi:10.1007/PL00010971). Because these counts cannot differentiate between living and inactive or even dead cells (Kepner and Pratt, 1994; Morita, 1997), the population size of living microorganisms has recently been enumerated for ODP Leg 201 sediment samples from the equatorial Pacific and the Peru margin using ribosomal ribonucleic acid targeting catalyzed reporter deposition-fluorescence in situ hybridization (CARD-FISH) (Schippers et al., 2005, doi:10.1038/nature03302). A large fraction of the subseafloor prokaryotes were alive, even in very old (16 Ma) and deep (>400 m) sediments. In this study, black shale samples from the Demerara Rise (Erbacher, Mosher, Malone, et al., 2004, doi:10.2973/odp.proc.ir.207.2004) were analyzed using AODC and CARD-FISH to find out if black shales also harbor microorganisms.

Miocene microflora and palaeoclimate reconstructions from three sites in Bulgaria

In this study we reconstruct quantitatively the Middle to Upper Miocene climate evolution in the southern Forecarpathian Basin (Central Paratethys area, Northwest Bulgaria) by applying the coexistence approach to 101 well-dated palynofloras isolated from three cores. The climatic evolution is compared with changes in vegetation and palaeogeography. The Middle Miocene was a period of a subtropical/warm-temperate humid climate with mean annual temperature (MAT) between 16 and 18°C and mean annual precipitation (MAP) between 1100 and 1300 mm. Thereby, during the entire Middle Miocene a trend of slightly decreasing temperatures is observed and only small climate fluctuations occur which are presumably related to palaeogeographic reorganisations. The vegetation shows a corresponding trend with a decrease in abundance of palaeotropic and thermophilous elements. The Upper Miocene is characterised by more diverse climatic conditions, probably depending on palaeogeographic and global climatic transformations. The beginning of this period is marked by a slight cooling and a significant drying of the climate, with MAT 13.3-17°C and MAP 652-759 mm. After that, fluctuations of all palaeoclimate parameters occur displaying cycles of humid/dryer and warmer/cooler conditions, which are again well reflected in the vegetation. Our study provides a first quantitative model of the Middle-Upper Miocene palaeoclimate evolution in Southeastern Europe and is characterised by a relatively high precision and resolution with respect to the climate data and stratigraphy.

Abundance of bacteria and endospores in surface sediments of Josephine Seamount area (Table 1)

During the 19th cruise of the research vessel "Meteor" between Madeira and Lisbon 260 strains of aerobic heterotrophic bacteria have been isolated from sediment samples collected from different depths. These strains have been identified mainly as members of the genera Marinovibrio, Pseudomonas, and Bacillus. The majority of bacteria isolated from shallow areas (Josephine Seamount) were sea water media requiring Marinovibrio and Pseudornonas spp. but in sediment samples taken from depths exceeding 1000 m the probably terrestrial sporeforming Bacillus spp. predominated. Further investigations in the same region during the 23rd cruise of the "Meteor" demonstrated that about 30 to 50% of the sporeforming bacteria found in the sediment samples could be isolated from dormant spores in situ. The remaining more than 50 % of sporeformers in the deep sea region examined are believed to be metabolic active cells.

Middle Miocene evolution and stable isotope ratios of Globorotalia (Fohsella) in the western equatorial Pacific

Evolution of the planktic foraminiferal lineage Globorotalia (Fohsella) occurred during the Miocene between 23.7 and 11.8 Ma and forms the basis for stratigraphic subdivision of the early middle Miocene (Zones N 10 through N 12). Important morphologic changes within the G. (Fohsella) lineage included a marked increase in test size, a transition from a rounded to an acute periphery, and the development of a keel in later forms. We found that the most rapid changes in morphology of G. (Fohsella) occurred between 13 and 12.7 Ma and coincided with an abrupt increase in the delta18O ratios of shell calcite. Comparison of isotopic results of G. (Fohsella) with other planktic foraminifers indicate that delta18O values of the lineage diverge from surface-dwelling species and approach deep-dwelling species after 13.0 Ma, indicating a change in depth habitat from the surface mixed layer to intermediate depth near the thermocline. Isotopic and faunal evidence suggests that this change in depth stratification was associated with an expansion of the thermocline in the western equatorial Pacific. After adapting to a deeper water habitat at 13.0 Ma, the G. (Fohsella) lineage became extinct abruptly at 11.8 Ma during a period when isotopic and faunal evidence suggest a shoaling of the thermocline. Following the extinction of G. (Fohsella), the ecologic niche of the lineage was filled by the Globorotalia (Menardella) group, which began as a deep-water form and later evolved to an intermediate-water habitat. We suggest that the evolution of G. (Fohsella) and G. (Menardella) were tightly linked to changes in the structure of the thermocline in the western equatorial Pacific.

Heterotrophic bacteria, Synechococcus, Prochlorococcus and Virus in the eastern Mediterranean Sea in March and April 2008 during SES_GR1

The dataset is based on samples collected in the framework of the project SESAME, in the Ionian, Libyan and Aegean Sea during March- April 2008. The objectives were to measure the standing stocks and calculate the production of the microbial compartment of the food web, describe the vertical distribution pattern and characterize its structure and function through the water column. Heterotrophic bacteria, Synechococcus, Prochlorococcus and Virus abundance: Subsamples for virus, heterotrophic bacteria and cyanobacteria (Synechococcus spp. and Prochlorococcus spp.) counting were analyzed using a FACSCalibur (Becton Dickinson) flow cytometer equipped with a standard laser (488 nm) and filter set and using deionized water as sheath fluid. Fluorescent beads with a diameter of 0.97 µm (Polysciences) were added to each sample as an internal standard, and all parameters were normalized to the beads and expressed as relative units. SYBRGreen I stain (Molecular Probe) was used to stain viral and heterotrophic bacterial DNA. Viruses were counted according to (Brussaard 1984). In order to avoid bulk consentrations of viruses samples we dilluted to Tris-EDTA (pH=8,0) buffer to a final sollution of 1/5 to 1/100. Total abundance and nucleid content classes were calculated using the Paint-A-Gate software (Becton Dickinson).