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The Late Paleocene and Early Eocene were characterised by warm greenhouse climates, punctuated by a series of rapid warming and ocean acidification events known as "hyperthermals", thought to have been paced or triggered by orbital cycles. While these hyperthermals, such as the Paleocene Eocene Thermal Maximum (PETM), have been studied in great detail, the background low-amplitude cycles seen in carbon and oxygen-isotope records throughout the Paleocene-Eocene have hitherto not been resolved. Here we present a 7.7 million year (myr) long, high-resolution, orbitally-tuned, benthic foraminiferal stable-isotope record spanning the late Paleocene and early Eocene interval (~52.5 - 60.5 Ma) from Ocean Drilling Program (ODP) Site 1262, South Atlantic. This high resolution (~2-4 kyr) record allows the changing character and phasing of orbitally-modulated cycles to be studied in unprecedented detail as it reflects the long-term trend in carbon cycle and climate over this interval. The main pacemaker in the benthic oxygen-isotope (d18O) and carbon-isotope (d13C) records from ODP Site 1262, are the long (405 kyr) and short (100 kyr) eccentricity cycles, and precession (21 kyr). Obliquity (41 kyr) is almost absent throughout the section except for a few brief intervals where it has a relatively weak influence. During the course of the Early Paleogene record, and particularly in the latest Paleocene, eccentricity-paced negative carbon-isotope excursions (d13C, CIEs) and coeval negative oxygen-isotope (d18O) excursions correspond to low carbonate (CaCO3) and coarse fraction (%CF) values due to increased carbonate dissolution, suggesting shoaling of the lysocline and accompanied changes in the global exogenic carbon cycle. These negative CIEs and d18O events coincide with maxima in eccentricity, with changes in d18O leading changes in d13C by ~6 (±5) kyr in the 405-kyr band and by ~3 (±1) kyr in the higher frequency 100-kyr band on average. However, these phase lags are not constant, with the lag in the 405-kyr band extending from ~4 (±5) kyr to ~21 (±2) kyr from the late Paleocene to the early Eocene, suggesting a progressively weaker coupling of climate and the carbon-cycle with time. The higher amplitude 405-kyr cycles in the latest Paleocene are associated with changes in bottom water temperature of 2-4ºC, while the most prominent 100 kyr-paced cycles can be accompanied by changes of up to 1.5ºC. Comparison of the 1262 record with a lower resolution, but orbitally-tuned benthic record for Site 1209 in the Pacific allows for verification of key features of the benthic isotope records which are global in scale including a key warming step at 57.7 Ma.

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Small biserial foraminifera were abundant in the early Miocene (ca. 18.9-17.2 Ma) in the eastern Atlantic and western Indian Oceans, but absent in the western equatorial Atlantic Ocean, Weddell Sea, eastern Indian Ocean, and equatorial Pacific Ocean. They have been assigned to the benthic genus Bolivina, but their high abundances in sediments without evidence for dysoxia could not be explained. Apertural morphology, accumulation rates, and isotopic composition show that they were planktic (genus Streptochilus). Living Streptochilus are common in productive waters with intermittent upwelling. The widespread early Miocene high Streptochilus abundances may reflect vigorous but intermittent upwelling, inducing high phytoplankton growth rates. However, export production (estimated from benthic foraminiferal accumulation rates) was low, possibly due to high regeneration rates in a deep thermocline. The upwelled waters may have been an analog to Subantarctic Mode Waters, carrying nutrients into the eastern Atlantic and western Indian Oceans as the result of the initiation of a deep-reaching Antarctic Circumpolar Current, active Agulhas Leakage, and vigorous vertical mixing in the Southern Oceans.

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