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The Pliocene and Pleistocene periods are known for the onset and consequent amplification of glacial-interglacial cycles. The California margin, situated in the mid-latitudes of the northern Pacific Ocean, is expected to be one of the most interesting regions for Pliocene to Pleistocene paleoceanography because this area occupies a unique position in the ocean-atmosphere system over the region. In this study, we investigated paleoceanographic history, using fossil diatoms, since the Brunhes/Matuyama (B/M) paleomagnetic boundary in which glacial and interglacial periods began to alternate in 100-yr cycles. In Hole 1018A, to a depth corresponding to the beginning of Northern Hemisphere glaciation (late Pliocene), we investigated the responses of the ocean-atmosphere system to stepwise cooling in the California margin. Although the work is still continuing, this data report shows that fossil diatoms of Pliocene and Pleistocene sediments significantly changed both in quality and quantity and implies a possible relationship to global climatic changes.

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Late Neogene biostratigraphy of planktonic foraminifers has been investigated from 13 sites cored during Ocean Drilling Program Leg 167 off the coast of California. The planktonic foraminiferal biostratigraphy of six of these sites is presented here at higher stratigraphic resolution for the interval that encompasses the late early Pliocene through the Quaternary (~3.5 Ma to present day). The sites form a transect along the California margin from 31°N to 41°N within the California Current system. A new planktonic foraminiferal zonation has been established largely on evolutionary changes within the Neogloboquadrina plexus, supported by other taxa. A total of eight zones are recognized, most of which are broadly applicable throughout the region, thus providing a biostratigraphic zonation of the sequence at ~0.5-m.y. intervals. The new zonation appears to be unique to the California Current system. The diversity of planktonic foraminiferal assemblages during the late Neogene appears to have remained relatively constant despite large-scale paleoclimatic change. The assemblages are consistently dominated by few taxa that almost always include the neogloboquadrinids and Globigerina bulloides. Low diversity and high dominance of the assemblages favored these and other taxa well adapted to upwelling systems exhibiting high seasonal surface ocean variability. Apparently the oceanographic conditions that favor such assemblages have persisted at least for the duration of the late Neogene (~3.5 Ma to present day). The biostratigraphically important forms have been illustrated with scanning electron micrographs.

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A numerical model of sulfate reduction and isotopic fractionation has been applied to pore fluid SO4**2- and d34S data from four sites drilled during Ocean Drilling Program (ODP) Leg 168 in the Cascadia Basin at 48°N, where basement temperatures reach up to 62°C. There is a source of sulfate both at the top and the bottom of the sediment column due to the presence of basement fluid flow, which promotes bacterial sulfate reduction below the sulfate minimum zone at elevated temperatures. Pore fluid d34S data show the highest values (135 per mil) yet found in the marine environment. The bacterial sulfur isotopic fractionation factor, a, is severely underestimated if the pore fluids of anoxic marine sediments are assumed to be closed systems and Rayleigh fractionation plots yield erroneous values for a by as much as 15 per mil in diffusive and advective pore fluid regimes. Model results are consistent with a = 1.077+/-0.007 with no temperature effect over the range 1.8 to 62°C and no effect of sulfate reduction rate over the range 2 to 10 pmol/ccm/day. The reason for this large isotopic fractionation is unknown, but one difference with previous studies is the very low sulfate reduction rates recorded, about two orders of magnitude lower than literature values that are in the range of µmol/ccm/day to tens of nmol/ccm/day. In general, the greatest 34S depletions are associated with the lowest sulfate reduction rates and vice versa, and it is possible that such extreme fractionation is a characteristic of open systems with low sulfate reduction rates.

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Silicoflagellates are described from Sites 588 (middle Eocene), 591 (middle Miocene to lower Pliocene), and 594 (middle Miocene to Quaternary) in the southwest Pacific. At Sites 591 and 594 a detailed silicoflagellate zonation is possible, although there are some obvious differences arising from the latitudinal position of the sites in the silicoflagellate assemblages. Comparison between the sequences recovered at Sites 591 and 206 (Leg 21) revealed two hiatuses in the latter, but helped to establish a zonation for this area from the lower Miocene to the Pleistocene and a correlation to standard nannoplankton zones. The stratigraphic implications of the taxonomy used by various authors and the species concept presented here are discussed in detail. Special reference is made to types described by Ehrenberg and to later synonyma, because the Ehrenberg collection is the base for all subsequent descriptions and evaluations of silicoflagellate taxa. Two new genera (Neonaviculopsis, Paramesocena), two new subspecies (Dictyocha fibula subsp. asymmetrica, Neonaviculopsis neonautica subsp. praenautica), and three new forms (Dictyocha perlaevis f. pentaradiata, Distephanus speculum subsp. speculum f. nonarius, and Mesocena ? hexalitha f. heptalitha) are described from the southwest Pacific Neogene and Pleistocene. Associated sponge spicules were noted and will be described in detail in a later paper, but some are documented on Plate 13.

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The Global Ocean Sampling (GOS) expedition is currently the largest and geographically most comprehensive metagenomic dataset, including samples from the Atlantic, Pacific, and Indian Oceans. This study makes use of the wide range of environmental conditions and habitats encompassed within the GOS sites in order to investigate the ecological structuring of bacterial and archaeal taxon ranks. Community structures based on taxonomically classified 16S ribosomal RNA (rRNA) gene fragments at phylum, class, order, family, and genus rank levels were examined using multivariate statistical analysis, and the results were inspected in the context of oceanographic environmental variables and structured habitat classifications. At all taxon rank levels, community structures of neritic, oceanic, estuarine biomes, as well as other exotic biomes (salt marsh, lake, mangrove), were readily distinguishable from each other. A strong structuring of the communities with chlorophyll a concentration and a weaker yet significant structuring with temperature and salinity were observed. Furthermore, there were significant correlations between community structures and habitat classification. These results were used for further investigation of one-to-one relationships between taxa and environment and provided indications for ecological preferences shaped by primary production for both cultured and uncultured bacterial and archaeal clades.