Flow conditions, bed form dimensions and shear stress experiments

Large asymmetric bed forms commonly develop in rivers. The turbulence associated with flow separation that develops over their steep lee side is responsible for the form shear stress which can represent a substantial part of total shear stress in rivers. This paper uses the Delft3D modeling system to investigate the effects of bed form geometry and forcing conditions on flow separation length and associated turbulence, and bed form shear stress over angle-of-repose (30 lee side angle) bed forms. The model was validated with lab measurements that showed sufficient agreement to be used for a systematic analysis. The influence of flow velocity, bed roughness, relative height (bed form height/water depth), and aspect ratio (bed form height/length) on the variations of the normalized length of the flow separation zone, the extent of the wake region (where the turbulent kinetic energy (TKE) was more than 70% of the maximum TKE), the average TKE within the wake region and the form shear stress were investigated. Form shear stress was found not to scale with the size of the flow separation zone but to be related to the product of the normalized extent of the wake region (extent of the wake region/extent of water body above the bed form) and the average TKE within the wake region. The results add to understanding of the hydrodynamics of bed forms and may be used for the development of better parameterizations of smallscale processes for application in large-scale studies.

Photosynthetic activity buffers ocean acidification in seagrass meadows

Macrophytes growing in shallow coastal zones characterised by intense metabolic activity have the capacity to modify pH within their canopy and beyond. We observed diel pH changes in shallow (5-12 m) seagrass (Posidonia oceanica) meadows spanning 0.06 pH units in September to 0.24 units in June. The carbonate system (pH, DIC, and aragonite saturation state (omega Ar)) and O2 within the meadows displayed strong diel variability driven by primary productivity, and changes in chemistry were related to structural parameters of the meadow, in particular, the leaf surface area available for photosynthesis (LAI). LAI was positively correlated to mean, max and range pHNBS and max and range omega Ar. In June, vertical mixing (as Turbulent Kinetic Energy) influenced max and min omega Ar, while in September there was no effect of hydrodynamics on the carbonate system within the canopy. Max and range omega Ar within the meadow showed a positive trend with the calcium carbonate load of the leaves, pointing to a possible link between structural parameters, omega Ar and carbonate deposition.

Upper-ocean microstructure data from the tropical Atlantic

SST variability within the Atlantic cold tongue (ACT) region is of climatic relevance for the surrounding continents. A multi cruise data set of microstructure observations is used to infer regional as well as seasonal variability of upper ocean mixing and diapycnal heat flux within the ACT region. The variability in mixing intensity is related to the variability in large scale background conditions, which were additionally observed during the cruises. The observations indicate fundamental differences in background conditions in terms of shear and stratification below the mixed layer (ML) for the western and eastern equatorial ACT region causing critical Froude numbers (Fr) to be more frequently observed in the western equatorial ACT. The distribution of critical Fr occurrence below the ML reflects the regional and seasonal variability of mixing intensity. Turbulent dissipation rates (?) at the equator (2°N-2°S) are strongly increased in the upper thermocline compared to off-equatorial locations. In addition, ? is elevated in the western equatorial ACT compared to the east from May to November, whereas boreal summer appears as the season of highest mixing intensities throughout the equatorial ACT region, coinciding with ACT development. Diapycnal heat fluxes at the base of the ML in the western equatorial ACT region inferred from ? and stratification range from a maximum of 90 Wm-2 in boreal summer to 55 Wm-2 in September and 40 Wm-2 in November. In the eastern equatorial ACT region maximum values of about 25 Wm-2 were estimated during boreal summer reducing to about 5 Wm-2 towards the end of the year. Outside the equatorial region, inferred diapycnal heat fluxes are comparably low rarely exceeding 10 Wm-2. Integrating the obtained heat flux estimates in the ML heat budget at 10°W on the equator accentuates the diapycnal heat flux as the largest ML cooling term during boreal summer and early autumn. In the western equatorial ACT elevated meridional velocity shear in the upper thermocline contributes to the enhanced diapycnal heat flux within this region during boreal summer and autumn. The elevated meridional velocity shear appears to be associated with intra-seasonal wave activity.

Physical oceanography, current meter data, and microstructure measurements 180 km downstream of Denmark Strait sill during Maria S. Merian cruise MSM21/1b

The main objectives of the cruise MSM21/1b were to characterize the spatio-temporal variability of the Denmark Strait overflow and to identify processes responsible for the exchange of the overflow plume with ambient water downstream of Denmark Strait. A multi-platform approach was taken to achieve the goals, based on moorings, an autonomous underwater vehicle (AUV), as well as lowered and vessel-mounted observations. From these platforms, measurements of temperature, salinity, dissolved oxygen, current velocity, dissipation of turbulent kinetic energy, and bottom pressure were obtained.

Physical Oceanography in the tropical Atlantic oxygen minimum zone

The replenishment of consumed oxygen in the open ocean oxygen minimum zone (OMZ) off northwest Africa is accomplished by oxygen transport across and along density surfaces, i.e. diapycnal and isopycnal oxygen supply. Here the diapycnal oxygen supply is investigated using a large observational set of oxygen profiles and diapycnal mixing data from years 2008 to 2010. Diapycnal mixing is inferred from different sources: (i) a large-scale tracer release experiment, (ii) microstructure profiles, and (iii) shipboard?acoustic current measurements plus density profiles. From these measurements, the average diapycnal diffusivity in the studied depth interval from 150 to 500m is estimated to be 1×10**-5 m2 s**-1, with lower and upper 95% confidence limits of 0.8×10**-5 m2 s**-1 and 1.4×10**-5 m2 s**-1. Diapycnal diffusivity in this depth range is predominantly caused by turbulence, and shows no significant vertical gradient. Diapycnal mixing is found to contribute substantially to the oxygen supply of the OMZ. Within the OMZ core, 1.5 µmol kg**-1 yr**-1 of oxygen is supplied via diapycnal mixing, contributing about one-third of the total demand. This oxygen which is supplied via diapycnal mixing originates from oxygen that has been laterally supplied within the upper CentralWater layer above the OMZ, and within the Antarctic Intermediate Water layer below the OMZ. Due to the existence of a separate shallow oxygen minimum at about 100m depth throughout most of the study area, there is no net vertical oxygen flux from the surface layer into the Central Water layer. Thus all oxygen supply of the OMZ is associated with remote pathways.

Tidal-induced mixing and diapycnal nutrient fluxes in the Mauritanian upwelling region

The Mauritanian coastal area is one of the most biologically productive upwelling regions in the world ocean. Shipboard observations carried out during maximum upwelling season and short-term moored observations are used to investigate diapycnal mixing processes and to quantify diapycnal fluxes of nutrients. The observations indicate strong tide-topography interactions that are favored by near-critical angles occurring on large parts of the continental slope. Moored velocity observations reveal the existence of highly nonlinear internal waves and bores and levels of internal wave spectra are strongly elevated near the buoyancy frequency. Dissipation rates of turbulent kinetic energy at the slope and shelf determined from microstructure measurements in the upper 200 m averages to ? = 5 × 10-8 W kg-1. Particularly elevated dissipation rates were found at the continental slope close to the shelf break, being enhanced by a factor of 100 to 1000 compared to dissipation rates farther offshore. Vertically integrated dissipation rates per unit volume are strongest at the upper continental slope reaching values of up to 30 mW m-2. A comparison of fine-scale parameterizations of turbulent dissipation rates for shelf regions and the open ocean to the measured dissipation rates indicates deficiencies in reproducing the observations. Diapycnal nitrate fluxes above the continental slope at the base of the mixed layer yielding a mean value of 12 × 10-2 µmol m-2 s-1 are amongst the largest published to date. However, they seem to only represent a minor contribution (10% to 25%) to the net community production in the upwelling region.

Measurements of ocean microstructure, physical oceanography and current in the Weddell Sea, Antarctica, during the RRS Ernest Shackleton cruises ES033 and ES060

Turbulence profile measurements made on the upper continental slope and shelf of the southeastern Weddell Sea reveal striking contrasts in dissipation and mixing rates between the two sites. The mean profiles of dissipation rates from the upper slope are 1-2 orders of magnitude greater than the profiles collected over the shelf in the entire water column. The difference increases toward the bottom where the dissipation rate of turbulent kinetic energy and the vertical eddy diffusivity on the slope exceed 10?7 W kg?1 and 10?2 m2 s?1, respectively. Elevated levels of turbulence on the slope are concentrated within a 100 m thick bottom layer, which is absent on the shelf. The upper slope is characterized by near-critical slopes and is in close proximity to the critical latitude for semidiurnal internal tides. Our observations suggest that the upper continental slope of the southern Weddell Sea is a generation site of semidiurnal internal tide, which is trapped along the slope along the critical latitude, and dissipates its energy in a inline image m thick layer near the bottom and within inline image km across the slope.