Sedimentary history and chemical characteristics of clay minerals from the Bengal Fan

The purpose of this study is to clarify the sedimentary history and chemical characteristics of clay minerals found in sediments deposited in the distal part of the Bengal Fan since the Himalayas were uplifted 17 m.y. ago. A total of seventy-eight samples were collected from three drilled cores which were to be used for the clay mineral analyses by means of XRD and ATEM. The results obtained from the analyses show that individual clay mineral species in the sediment samples at each site have similar features when the samples are of the same age, whereas these species have different features in samples of differing geological ages. Detrital clay minerals such as illite and chlorite were deposited in greater amounts than kaolinite and smectite during the Early to Middle Miocene. This means that the Himalayan uplift was vigorous at least until the Middle Miocene. In the Pliocene chemical weathering was more prevalent so that instead, in the distal part of the Bengal Fan, kaolinite shows the highest concentrations. This would accord with weaker uplift in the Himalayas. In the Pleistocene period, vigorous Himalayan uplift is characterized by illite-rich sediment in place of kaolinite. In the Holocene, smectite shows the highest concentration in place of the illite and kaolinite which were the predominant clay minerals of the earlier periods. Increasing smectite concentration suggests the Himalayan uplift to have been stable after the Pleistocene period. The smectite analyzed here is found to be dioctahedral Fe-beidellite, and it originated largely from the augite-basalt on the Indian Deccan Traps. The tri-octahedral chlorite is subdivided into three sub-species, an Fe-type, a Mg-type and an intermediate type. The mica clay mineral can be identified as di-octahedral illite which is rich in potassium. The chemical composition and morphology of each clay mineral appears to exhibit no change with burial depth in the sedimentary columns. This implies that there was no systematic transformation of clay minerals with time.

Nanoflagellates (mixotrophs, heterotrophs and autotrophs) in the oligotrophic eastern Mediterranean

The vertical distribution (0 to 100 m) and abundance of nanoflagellates were examined in the oligotrophic Aegean Sea (east Mediterranean) in early spring (south basin) and late summer (north and south basins) of 1997 in the framework of the MATER project (Mass Transfer and Ecosystem Response). Different trophic types of nanoflagellates (mixotrophic, heterotrophic, and phototrophic) were identified based on the possession of chloroplasts and the consumption of Fluorescently Labelled Minicells (FLM). Bacterial production (leucine method) was compared with bacterivory estimated from FLM consumption. We found that mixotrophic nanoflagellates played a small role as bacterivores relative to heterotrophic nanoflagellates and total bacterivory roughly balanced bacterial production. In early spring with cool (14.2°C) well-mixed water columns, flagellate concentrations were lowest, phototrophic flagellates were the dominant group and concentrations varied little with depth. Average concentrations of mixotrophs, heterotrophs and autotrophs were 0.07, 0.34, and 0.64 x 103 cells/ml, respectively. Bacterial production in the 0 to 100 m layer averaged about 0.74 µg C/l/d. Estimated nanoflagellate bacterivory from FLM ingestion accounted for 40% of bacterial production with mixotrophic nanoflagellates consuming 5% of bacterial production. In late summer, total nanoflagellate concentrations were higher. Average concentrations of mixotrophs, heterotrophs and autotrophs were 0.09, 1.14, and 0.66 x 103 cells/ml, respectively, in the southern basin and 0.09, 1.1, and 0.98 x 103 cells/ml, respectively, in the northern basin. In September, bacterial production for both basins roughly balanced estimated nanoflagellate consumption. Similar to the March estimates, mixotrophic nanoflagellates accounted for about 5% of nanoflagellate bacterivory. In a nutrient enrichment experiment in March, treatments including phosphorus resulted in increased bacterial production and reductions in identifiable mixotrophs.

Grain size composition of sediments from ODP Leg 164 sites

This research was designed to check the assumption of the grain-size control on a gas hydrate presence in the Blake Ridge sediments; the assumption had originated from the data gained at Deep Sea Drilling Project (DSDP) Site 533. Granulometric analysis (the combined pipette-sieve method) of the 345 sediment samples obtained after pore-water squeezing from Ocean Drilling Program (ODP) Sites 994, 995, and 997 has provided support for this assumption. The zone of negative anomalies of pore-water chlorinity, which is generally recognized to be gas hydrate bearing, is confined, as a whole, to the interval of comparatively coarse-grained sediments in each of the three site columns because content of the fine fractions <0.05, <0.01, <0.005, and <0.001 mm is lower there (although the character of this control changes from site to site). The individual chlorinity anomalies also coincide, for the most part, with relatively coarse-grained sediments.

Temperature and d18O measurements from different ODP Sites at the shelf and upper slope of the Peru Margin

The first experimentally determined temperature dependent oxygen-18 fractionation factor between dolomite and water at low temperatures [Vasconcelos et al. 1995 doi:10.1130/G20992.1] allows now the precise calculation of temperatures during early diagenetic dolomite precipitation. We use d18O values of early diagenetic dolomite beds sampled during ODP Legs 112 and 201 on the Peru continental margin (Sites 1227, 1228 and 1229) [Meister et al. 2007, doi:10.1111/j.1365-3091.2007.00870.x] to calculate paleo-porewater temperatures at the time of dolomite precipitation. We assumed unaltered seawater d18O values in the porewater, which is supported by d18O values of the modern porewater presented in this study. The dolomite layers in the Pleistocene part of the sedimentary columns showed oxygen isotope temperatures up to 5 °C lower than today. Since Sites 1228 and 1229 are located at 150 and 250 m below sealevel, respectively, their paleo-porewater temperatures would be influenced by considerably colder surface water during glacial sealevel lowstands. Thus, Pleistocene dolomite layers in the Peru Continental margin probably formed during glacial times. This finding is consistent with a model for dolomite precipitation in the Peru Margin recently discussed by Meister et al. [Meister et al. 2007, doi:10.1111/j.1365-3091.2007.00870.x], where dolomite forms episodically at the sulphate methane interface. It was shown that the sulphate methane interface migrates upwards and downwards within the sedimentary column, but dolomite layers may only form when the sulphate-methane interface stays at a fixed depth for a sufficient amount of time. We hypothesize that the sulphate-methane interface persists within TOC-rich interglacial sediments, while this zone is buried by TOC-poor sedimentation during glacial times. Thus, the presented oxygen isotope data provide additional information on the timing of early diagenetic dolomite formation and a possible link between episodicity in dolomite formation and sealevel variations. A similar link between early diagenesis and oceanography may also explain spacing of dolomite layers in a Milankovitch type pattern observed in the geological record, such as in the Miocene Monterey Formation.

Gridded bathymetry from multibeam echosounder HS-DS2 data of the cruise M51/4 (2001)

Bathymetry based on data recorded during M51-4 between 13.12.2001 and 28.12.2001 in the Black Sea. The purpose of the present-study was to sample sediments and the water columns of the nw/sw Black Sea and the E Marmara Sea to study a) a high resolution sediment records of Holocene climate, b) biogeochemical associated with deep anaerobic methane oxidation, and c) element cycling in the stratified water column. Bathymetric data (hydrosweep + parasound) was primarily used to choose appropriate sites for coring of undisturbed sediments. Samples were taken for future analyses of abundance and activity of bacteria, geochemistry and dating.

Turbidity measurements in 96-wells microplates to determine the densities of copiotrophic and oligotrophic bacteria with the Most-Probable-Number-method during POLARSTERN cruise ANT-XI/2

A new microtiter-plate dilution method was applied during the expedition ANTARKTIS-XI/2 with RV Polarstern to determine the distribution of copiotrophic and oligotrophic bacteria in the water columns at polar fronts. Twofold serial dilutions were performed with an eight-channel Electrapette in 96-wells plates by mixing 150 µl of seawater with 150 µl of copiotrophic or olitrophic Trypticase-Broth, three times per well. After incubation of about 6 month at 2 °C, turbidities were measured with an eight-channel photometer at 405 nm and combinations of positive test results for three consecutive dilutions chosen and compared with a Most Probable Number table, calculated for 8 replicates and twofold serial dilutions. Densities of 12 to 661 cells/ml for copiotrophs, and 1 to 39 cells/ml for oligotrophs were found. Colony Forming Units on copiotrophic Trypticase-Agar were between 6 and 847 cells/ml, which is in the same range as determined with the MPN method.

High resolution bathymetry of the Red Sea Rift (1 arc-second) from POSEIDON cruise POS408 and PELAGIA cruises 64PE350 and 64PE351

Gridded multibeam bathymetry from Poseidon cruise 408 and Pelagia cruises 64PE350 and 64PE351 within the Jeddah Transect Project. The raw-data were post-processed and gridded at a resolution of 30 m with QPS Fledermaus Pro. For smaller file size and better handling 11 tiles were created with GlobalMapper (5 columns, 5 lines).

Planktonic foraminifera stratigraphy and datums of ODP Site 184-1143 and Hole 184-1146A, South China Sea

The biostratigraphy of Miocene-age sediment samples recovered from Ocean Drilling Program Sites 1143 and 1146, South China Sea, is presented. The preservation of the planktonic foraminifers recovered from both sites varies widely, from poor to very good. The volume of biogenic sediment in the >63-µm size fraction also varies considerably, with many samples being dominated by mud. In comparison to shipboard biostratigraphy, based on core catcher analyses with a depth resolution of ~10 m, we analyzed samples from the two stratigraphic columns every 2-3 m (~45- to 93-k.y. resolution). The placement of planktonic foraminifer zonal boundaries was made at a resolution of ~1.5 m at Site 1146 and ~3.0 m at Site 1143. The higher resolution has resulted in significant changes in biostratigraphic zonal boundary locations compared to shipboard results. For the time interval of 5.54-10.49 Ma, the changes in zonation reveal similar age-depth models at both sites, with three segments of changing sedimentation rate through the upper Miocene, though the differences in sedimentation rates at Site 1146 are subtler than those at Site 1143. The boundary between lithologic Units II and III at Site 1146 corresponds to a sharp change in sedimentation rate (58 to 21 m/m.y.) at 15.1 Ma (the first occurrence of Orbulina suturalis). At this site, the interval from 16.4 to 15.1 Ma is characterized by very high mass accumulation rates in the noncarbonate fraction. Above this interval the carbonate fraction becomes increasingly important in the sediment flux to the South China Sea. At Site 1143, sedimentation rates increase from 8 to 99 m/m.y. at 8.6 Ma. This corresponds to a dramatic increase in both carbonate and noncarbonate mass accumulation rates at the site, but no change in lithology.

Svalbard 2010 mesocosm experiment: Protistan diversity

Hierarchical clustering. Taxonomic assignment of reads was performed using a preexisting database of SSU rDNA sequences from including XXX reference sequences generated by Sanger sequencing. Experimental amplicons (reads), sorted by abundance, were then concatenated with the reference extracted sequences sorted by decreasing length. All sequences, experimental and referential, were then clustered to 85% identity using the global alignment clustering option of the uclust module from the usearch v4.0 software (Edgar, 2010). Each 85% cluster was then reclustered at a higher stringency level (86%) and so on (87%, 88%,.) in a hierarchical manner up to 100% similarity. Each experimental sequence was then identified by the list of clusters to which it belonged at 85% to 100% levels. This information can be viewed as a matrix with the lines corresponding to different sequences and the columns corresponding to the cluster membership at each clustering level. Taxonomic assignment for a given read was performed by first looking if reference sequences clustered with the experimental sequence at the 100% clustering level. If this was the case, the last common taxonomic name of the reference sequence(s) within the cluster was used to assign the environmental read. If not, the same procedure was applied to clusters from 99% to 85% similarity if necessary, until a cluster was found containing both the experimental read and reference sequence(s), in which case sequences were taxonomically assigned as described above.

Morphometry and microphotographs of devonian stromatoporoids from southern Poland

Famennian Stromatoporoidea from the Quasiendothyra communis Foraminiferal Zone and slightly younger strata from the Debnik anticline, southern Poland, form a succession of three consecutive assemblages. Assemblages 1 and 3 consist of representatives of the order Clathrodictyida, while assemblage 2 is dominated by the order Labechiida. The clathrodictyids are represented by the genus Gerronostroma, and labechiids are represented by the genus Stylostroma. Species assigned here to the genus Gerronostroma show a network of amalgamated pillars in the central part of the columns, a feature regarded by previous authors as typical of the genus Clavidictyon. Two new species, Stylostroma multiformis sp. nov. and Gerronostroma raclaviense sp. nov., are described. Stromatoporoids from southern Poland differ from the Famennian fauna of western Europe, showing affinity to eastern European and Siberian Stromatoporoidea.

Concentrations of As and other chemical elements in bottom sediments of the Baltic Sea

As is less toxic than Hg, Cd, Pb, Se, Zn, and Cu. The As clarke for clays and shales is 10 ppm. Our samples of bottom sediments from Kurshskii Bay were determined to contain from 15 to 26 ppm As and up to 34 ppm As in the vicinity of the Neman River mouth. Elevated As concentrations (50-114 ppm) were detected in four columns of subsurface bottom sediments (at depths of 10-65 cm) from the Vistula Lagoon. Elevated As concentrations (50-180 ppm) were also found in a few surface samples of sand from the Gdansk Deep near oil platform D-6. These sediments are either partly contaminated with anthropogenic As or contain Fe sulfides and glauconite, which can concentrate As and contain its elevated concentrations. The As concentration in columns of bottom sediments from the Gulf of Finland were at the natural background level (throughout the columns) typical of the area (9-34 ppm). We repeatedly detected very high As concentrations (up to 227 ppm As) in politic ooze from Bornholm Deep, in the vicinity of the sunken vessel with chemical weapons. The sources of elevated As concentrations in the Baltic Sea are the following: (1) chemical weapon (CW) material buried in the floor of the Baltic Sea; (2) As-bearing pesticides, agricultural mineral fertilizers, and burned coal and other fuels; (3) kerogen-bearing Ordovician rocks exposed on the bottom; and (4) As-rich Fe sulfides brought to the area together with construction sand and gravel. This mixture was used in paper production and for the construction of hydraulic engineering facilities in the Vistula Lagoon in the early 20th century and later caused the so-called lagoon disease.