Appendix 7: List of species with their distribution ranges restricted to the corresponding phytogeographical region

Understanding species distribution patterns and the corresponding environmental determinants is a crucial step in the development of effective strategies for the conservation and management of plant communities and ecosystems. Therefore, a central prerequisite is the biogeographical and macroecological analysis of factors and processes that determine contemporary, potential, as well as future geographic distribution of species. This thesis has been conducted in the framework of the BIOMAPS-BIOTA project at the Nees Institute of Biodiversity of Plants, which was funded by the German Federal Ministry of Education and Research (BMBF). The study investigated patterns of plants species richness and phytogeographic regions under contemporary environmental conditions and forecasted future climate change in the area of West Africa covering five countries: Benin, Burkina Faso, Côte d'Ivoire, Ghana and Togo. Firstly, geographic patterns of vascular plant species richness have been depicted at a relatively fine spatial resolution based on the potential distribution of 3,393 species. Species richness is closely related to the steep climatic gradient existing in the region with a high concentration of species in the most humid areas in the south and decreases towards the northern drier areas. The investigation of the effectiveness of the existing network of protected areas shows an overall good coverage of species in the study area. However, the proportion of covered species is considerably lower at national extent for some countries, thus calling for more protected areas in order to cover adequately a maximum number of plants species in these countries. Secondly, based on the potential distribution range of vascular plant species, seven phytogeographic regions have been delineated that broadly reflect the vegetation zones as defined by White (1983). However notable differences to the delineation of White (1983) occur at the margins of some regions. Corresponding to a general southward shifted of all regions. And expansion of the Sahel vegetation zone is observed in the north, while the rainforest zone is decreased in the very south.This is alarming since the rainforest shelters a high number of species and a high proportion of range-restricted or endemic species, despite their relatively small extent compared to the other regions. Finally, the evaluation of the potential impact of climate change on plant species richness in the study area, results in a severe loss of future suitable habitat for up to 50% of species per grid cell, particularly in the rainforest region. Moreover, the analysis of the possible shift of phytogeographic regions shows in general a strong deterioration of the West African rainforest. In contrast the drier areas are expanding continuously, although a slight gain in species number can be observed in some particular regions. The overall lesson to retain from the results of this study is that the West African rainforest should be fixed as a high priority area for the conservation of biodiversity of plants, since it is subject to severe contemporary and projected future threats.

Ground beetle (Carabidae) abundance data from north-eastern Australian rainforest, between June 2008 - January 2010, using pitfall traps

Understanding how the environment influences patterns of diversity is vital for effective conservation management, especially in a changing global climate. While assemblage structure and species richness patterns are often correlated with current environmental factors, historical influences may also be considerable, especially for taxa with poor dispersal abilities. Mountain-top regions throughout tropical rainforests can act as important refugia for taxa characterised by low dispersal capacities such as flightless ground beetles (Carabidae), an ecologically significant predatory group. We surveyed flightless ground beetles along elevational gradients in five different subregions within the Australian Wet Tropics World Heritage Area to investigate (1) whether the diversity and composition of flightless ground beetles are elevationally stratified, and, if so, (2) what environmental factors (other than elevation per se) are associated with these patterns. Generalised linear models and model averaging techniques were used to relate patterns of diversity to environmental factors. Unlike most taxonomic groups, flightless ground beetles increased in species richness and abundance with elevation. Additionally, each subregion consisted of distinct assemblages containing a high level of regional endemic species. Species richness was most strongly positively associated with the historical climatic conditions and negatively associated with severity of recent disturbance (treefalls) and current climatic conditions. Assemblage composition was associated with latitude and current and historical climatic conditions. Our results suggest that distributional patterns of flightless ground beetles are not only likely to be associated with factors that change with elevation (current climatic conditions), but also factors that are independent of elevation (recent disturbance and historical climatic conditions). Variation in historical vegetation stability explained both species richness and assemblage composition patterns, probably reflecting the significance of upland refugia at a geographic time scale. These findings are important for conservation management as upland habitats are under threat from climate change.

Dinoflagellate cysts abundance and events of ODP Hole 189-1168A sediments

Palynomorphs were studied in samples from Ocean Drilling Program (ODP) Leg 189, Hole 1168A (slope of the western margin of Tasmania; 2463 m water depth). Besides organic-walled dinoflagellate cysts (dinocysts), broad categories of other palynomorphs were quantified in terms of relative abundance. In this contribution, we provide an overview of the early late Eocene-Quaternary dinocyst distribution and illustrate main trends in palynomorph distribution. Dinocyst species throughout Hole 1168A are largely cosmopolitan with important contributions of typical low-latitude taxa and virtual absence of endemic Antarctic taxa. Dinocyst stratigraphic distribution broadly matches that known from the Northern Hemisphere and equatorial regions, although significant differences are noted. Selected potentially biochronostratigraphically useful events are summarized. The distribution of dinocysts in the middle-upper Miocene interval is rather patchy, probably due to prolonged exposure to oxygen. An important general aspect in the dinocyst assemblages is the near absence of Antarctic endemic species and the apparent influence of relatively warm waters throughout the succession at Site 1168. General palynomorph distribution indicates continued deepening from an initial shallow, even restricted, marine setting from late Eocene-Quaternary times. A curious massive influx of small skolochorate acritarchs is recorded throughout the late early-early middle Miocene; the significance of this signal is not yet understood. A general long-term oligotrophic nature of the surface waters influencing Site 1168 is suggested from the low abundance of (proto) peridinioid, presumably heterotrophic, species. The overall dinocyst distribution pattern corresponds to the long-term existence of a Leeuwin-like current influencing the region, including Site 1168, confirming results of earlier studies on other microfossil groups. The occasional influence of colder surface water conditions is, however, also apparent, notably during the late Pliocene-Quaternary, indicating the potential of high-resolution dinocyst analysis for future paleoceanographic studies.

Planktic foraminifera across the Cretaceous-Tertiary transition in the Antarctic Ocean

Three Antarctic Ocean K/T boundary sequences from ODP Site 738C on the Kerguelen Plateau, ODP Site, 752B on Broken Ridge and ODP Site 690C on Maud Rise, Weddell Sea, have been analyzed for stratigraphic completeness and faunal turnover based on quantitative planktic foraminiferal studies. Results show that Site 738C, which has a laminated clay layer spanning the K/T boundary, is biostratigraphically complete with the earliest Tertiary Zones P0 and P1a present, but with short intrazonal hiatuses. Site 752B may be biostratigraphically complete and Site 690C has a hiatus at the K/T boundary with Zones P0 and P1a missing. Latest Cretaceous to earliest Tertiary planktic foraminiferal faunas from the Antarctic Ocean are cosmopolitan and similar to coeval faunas dominating in low, middle and northern high latitudes, although a few endemic species are present. This allows application of the current low and middle latitude zonation to Antarctic K/T boundary sequences. The most abundant endemic species is Chiloguembelina waiparaensis, which was believed to have evolved in the early Tertiary, but which apparently evolved as early as Chron 30N at Site 738C. Since this species is only rare in sediments of Site 690C in the Weddell Sea, this suggests that a watermass oceanographic barner may have existed between the Indian and Atlantic Antarctic Oceans. The cosmopolitan nature of the dominant fauna began during the last 200,000 to 300,000 years of the Cretaceous and continued at least 300,000 years into the Tertiary. This indicates a long-term environmental crisis that led to gradual elimination of specialized forms and takeover by generalists tolerant of wide ranging temperature, oxygen, salinity and nutrient conditions. A few thousand years before the K/T boundary these generalists gradually declined in abundance and species became generally dwarfed due to increased environmental stress. There is no evidence of a sudden mass killing of the Cretaceous fauna associated with a bolide impact at the K/T boundary. Instead, the already declining Cretaceous taxa gradually disappear in the early Danian and the opportunistic survivor taxa (Ch. waiparaensis and Guembelitria cretacea) increase in relative abundance coincident with the evolution of the first new Tertiary species.

Lake Baikal amphipods under climate change: Thermal constraints and ecological consequences, links to supplementary material

Lake Baikal, the world's most voluminous freshwater lake, has experienced unprecedented warming during the last decades. A uniquely diverse amphipod fauna inhabits the littoral zone and can serve as a model system to identify the role of thermal tolerance under climate change. This study aimed to identify sublethal thermal constraints in two of the most abundant endemic Baikal amphipods, Eulimnogammarus verrucosus and Eulimnogammarus cyaneus, and Gammarus lacustris, a ubiquitous gammarid of the Holarctic. As the latter is only found in some shallow isolated bays of the lake, we further addressed the question whether rising temperatures could promote the widespread invasion of this non-endemic species into the littoral zone. Animals were exposed to gradual temperature increases (4 week, 0.8 °C/d; 24 h, 1 °C/h) starting from the reported annual mean temperature of the Baikal littoral (6 °C). Within the framework of oxygen- and capacity-limited thermal tolerance (OCLTT), we used a nonlinear regression approach to determine the points at which the changing temperature-dependence of relevant physiological processes indicates the onset of limitation. Limitations in ventilation representing the first limits of thermal tolerance (pejus (= "getting worse") temperatures (Tp)) were recorded at 10.6 (95% confidence interval; 9.5, 11.7), 19.1 (17.9, 20.2), and 21.1 (19.8, 22.4) °C in E. verrucosus, E. cyaneus, and G. lacustris, respectively. Field observations revealed that E. verrucosus retreated from the upper littoral to deeper and cooler waters once its Tp was surpassed, identifying Tp as the ecological thermal boundary. Constraints in oxygen consumption at higher than critical temperatures (Tc) led to an exponential increase in mortality in all species. Exposure to short-term warming resulted in higher threshold values, consistent with a time dependence of thermal tolerance. In conclusion, species-specific limits to oxygen supply capacity are likely key in the onset of constraining (beyond pejus) and then life-threatening (beyond critical) conditions. Ecological consequences of these limits are mediated through behavioral plasticity in E. verrucosus. However, similar upper thermal limits in E. cyaneus (endemic, Baikal) and G. lacustris (ubiquitous, Holarctic) indicate that the potential invader G. lacustris would not necessarily benefit from rising temperatures. Secondary effects of increasing temperatures remain to be investigated.

Effective acoustical monitoring tools for Mannophryne lamarcai

We performed the field-work during the dry (March 2014) and reainy season (May and June 2014) at the species type locality: Cerro Socopó, located at central-west region between Falcón, Lara and Zulia states, Venezuela. Socopó is a small and isolated mountain (1.571 m) belonging to the Ziruma mountains, and represents a relict of tropical mountain forest surrounded by semi-arid vegetation and grassland. This area is home to 312 species of vertebrates, including endangered and endemic amphibians species like Mannophryne lamarcai, Leptodactylus magistris and Dendropsophus amicorum. These forest and species are severely threatened by cattle ranch and illegal timber extraction, with forest formations only above 1000 meters. Despite this, no legal protected figure has been established in the area. We identified a 2.5 km secondary road transect within the study area based on the following criteria: 1) it cover different habitat types (streams and lagoons); and 2) it within the altitudinal gradient described for the specie (1,040 to 1,363 m). We identified three sampling points throughout the transect located in the vicinity of wetland habits: socopo1, socopo2 and socopo4. We did two types of recordings: 1) high quality recordings to characterize the advertisement call for M. lamarcai, non described to date (socopo4), and 2) recordings in different sampling points to evaluate call detectors performance in different acoustic scenarios (in all three localities).

Diversity and zoogeography of Antarctic deep-sea Munnopsidae (Crustacea, Isopoda, Asellota) from three ANDEEP expeditions

The family Munnopsidae was the most abundant and diverse among 22 isopod families collected by the ANDEEP deep-sea expeditions in 2002 and 2005 in the Atlantic sector of the Southern Ocean. A total of 219 species from 31 genera and eight subfamilies were analysed. Only 20% species were known to science, and 11% of these were reported outside the ANDEEP area mainly from other parts of the SO or the South Atlantic deep sea. One hundred and five species (50%) were rare, occurring at only 1 or 2 stations. Seventy-two percent of all munnopsid specimens belong to the most numerous 25 species with a total abundance of more than 75 specimens; 5 of these species (40% of all specimens) belong to the main genera of the world munnopsid fauna, Eurycope, Disconectes, Betamorpha, and Ilyarachna. About half of all munnopsid specimens and 34% of all species belong to the subfamily Eurycopinae, which is followed in occurrence by the Lipomerinae (19%). Munnopsinae is the poorest represented subfamily (1.5%). The composition of the subfamilies for the munnopsid fauna of the ANDEEP area differs from that of northern faunas. Lipomerinae show a lower percentage (7%) in the North Atlantic and are absent in the Arctic and in the North Pacific. This subfamily is considered as young and having a centre of origin and diversification in the Southern Ocean. The analyses of the taxonomic diversity and the distribution of Antarctic munnopsids and the distribution of the world fauna of all genera of the family revealed that species richness and diversity of the genera are highest in the ANDEEP area. The investigated fauna is characterised also by high percentage of endemic species, the highest richness and diversity of the main munnopsid genera and subfamily Lipomerinae. This supports the hypothesis that the Atlantic sector of SO deep sea may be considered as the main contemporary centre of diversification of the Munnopsidae. It might serve as a diversity pump of species of the Munnopsidae to more northern Atlantic areas via the deep water originating in the Weddell Sea.

Diatom biostratigraphy of the Kerguelen Plateau and Prydz Bay, Southern Ocean

Samples were examined for diatoms from 22 holes at 11 sites cored by ODP Leg 119 on the Kerguelen Plateau and in Prydz Bay, East Antarctica. Diatoms were observed in Oligocene through Holocene sediments recovered from the Kerguelen Plateau. The diatom flora from the Kerguelen Plateau is characterized by species such as Azpeitia oligocenica, Rocella gelida, Rocella vigilans, and Synedra jouseana in the Oligocene and Crucidenticula nicobarica, Denticulopsis hustedtii, Nitzschia miocenica, and Thalassiosira miocenica in the Miocene. This somewhat cosmopolitan assemblage gives way to a Pliocene and Holocene assemblage characterized by species such as Nitzschia kerguelensis, Thalassiosira inura, and Thalassiosira torokina, which are endemic to the Southern Ocean region. Samples examined from Prydz Bay are generally devoid of diatoms. The exception is Site 739, where diatoms occur sporadically in lower Oligocene and upper Miocene through Quaternary sediments. The Leg 119 diatom biostratigraphic results allow the development of a stratigraphic framework for the Indian sector of the Southern Ocean. This diatom zonation integrates diatom zonations developed previously for other sectors of the Southern Ocean. The zonation proposed here is based on biostratigraphic events of both geographically widespread and endemic species calibrated to the paleomagnetic stratigraphy. As such, this zonation has application throughout the Southern Ocean and allows correlation from the southern high latitudes to the low latitudes.

Distribution of foraminiferal fauna from ODP Hole 122-762C (Table 1)

Planktonic foraminiferal diversity, equitability and biostratigraphic analysis of samples from Ocean Drilling Program (ODP) Leg 122, Hole 762C show that in general, cool water conditions prevailed during the latest Campanian-Maastrichtian in the eastern Indian Ocean. This is indicated by planktonic foraminiferal assemblages characterized by low species diversity and equitability with abundant rugoglobigerinids and heterohelicids. Archaeoglobigerinids, globigerinelloids, hedbergellids, and long-ranging double-keeled globotruncanids are also present in varying abundance but single-keeled forms occur rarely and sporadically. Identification of the stage and zonal boundaries for the studied geologic interval have been achieved through biostratigraphic analyses of closely spaced samples. Three planktonic foraminiferal biozones were identified, namely; in stratigraphic order, the Heterohelix rajagopalani, Contusotruncana contusa and Abathomphalus mayaroensis Zones. In Hole 762C, a Transitional Realm with Austral influences is defined for the latest Campanian to Maastrichtian, as shown by the high relative abundance of fauna characteristic of Transitional and Austral Realms. Austral endemic species such as Archaeoglobigerina australis Huber and Hedbergella sliteri Huber were found in the samples studied but Globigerinelloides impensus Sliter andA rchaeoglobigerina mateola Huber are conspicuously absent. From the latest Campanian to middle Maastrichtian, cooler parts of the Transitional Realm prevailed. A slight warming trend is assumed towards the end of the middle Maastrichtian because the faunas contain more species indicative of warm water conditions. The late Maastrichtian also appears to have been warmer than the latest Campanian-middle Maastrichtian. This conclusion is based on the high diversity and equitability values and recognition of some thermophilic taxa. A Tethyan influence is inferred for the latest Maastrichtian on the basis of an increase of planktonic foraminiferal species diversity and occurrences of several keeled taxa.

Sedimentology, geochemistry and ostracodes from Lake Ohrid

Ancient Lake Ohrid, located in the southern Balkan Peninsula in Macedonia and Albania is characterized by a high degree of endemism and it is considered to be the oldest lake in Europe. But its exact age (between one and ten million years) and also its origin are so far not known. To unravel these uncertainties an ICDP (International Continental Scientific Drilling Program) drilling project (Scientific Collaboration On Past Speciation Conditions in Ohrid (SCOPSCO)), started in April 2013. In addition to the investigations about the age and origin, other paleolimnological studies, e.g., the reconstruction of past climate and of past lake level changes, should be performed with the drilled cores. Used proxies in such paleolimnological studies are, e.g., ostracodes because they respond sensitively to environmental changes but an accurate knowledge of their preferences and tolerances to specific environmental conditions is necessary for this purpose. So far, this knowledge about the, mostly endemic, Ohrid ostracodes was limited. Thus, within the framework of this thesis, ostracodes and a multiplicity of environmental data were collected in Lake Ohrid and its adjacent waters during four field campaigns. In a total of 47 ostracode species could be detected in the entire study area and 32 of them were found alive in Lake Ohrid. Multivariate statistic identified that water depth, salinity, conductivity, pH, and dissolved oxygen were the main determining factors for ostracode distribution in the entire study area. In Lake Ohrid, the distribution was mainly controlled by water depth, water temperature, and pH. Some ostracodes were identified as strong indicator species for important environmental variables, e.g., water temperature and water depth. A distinctive feature of Lake Ohrid was the finding of the ostracode genus Amnicythere whose species normally inhabit oligo-(meso-)haline waters and this could point to a marine origin of the lake. So far, the specialized endemic ostracodes show the highest abundances and the greatest spatial distribution in Lake Ohrid but during the sampling eight widespread species were found for the first time in the lake. They inhabited mainly the northern part of the lake, where two cities are located and industry and agriculture play a major role, and they were limited to water depths above 50 m and this could be an evidence for an increasing anthropogenic pressure because widespread ostracode species often replace endemic species. To unravel the human impact on Lake Ohrid during the last decades short sediment cores were taken and the multi-proxy study indicated that the lake productivity between the early 1920s and the late 1980s was relatively low. Diatom assemblages indicate a rising productivity in the southern part of Lake Ohrid since the mid 1970s and geochemical proxies and ostracodes point to an increasing productivity since the late 1980s in the southern and in the northern part. A slight increase in the productivity continued until 2009. Noticeable is the fact that since the early 1990s, the increasing productivity and the increasing concentrations of heavy metals correspond to a decreasing number of ostracodes in the northern part of Lake Ohrid. Perhaps, this indicates that living conditions in this lake part became less favorable for the mostly endemic ostracode species. Furthermore, the sediment samples from the cores show relatively high concentrations of arsenic, iron, and nickel. Fluctuations in ostracode assemblages from three longer sediment cores, the longest spans approximately 136 ka, taken in Lake Ohrid, correspond to fluctuations in the productivity, in the carbonate content, of the lake level, and of climate changes. Between the marine isotope stage (MIS) 6 and MIS 2 the number of ostracode valves is very low or the valves were completely absent. This corresponds to a low lake productivity, a low carbonate content, and a low lake level. At the onset of the Holocene, the number of valves increased markedly and this correlates with an increased productivity and carbonate content and a warmer climate. But during the Little Ice Age (LIA), the number of valves dropped again and species which prefer warmer waters disappeared completely. This drop corresponds also to a low productivity. After the LIA, the number of species increased again but since 1895 AD a strong and abrupt decrease is visible. A reason for this could be an increase in the heavy metal concentrations.

Characteristics of introduced Aphididae species, an endemic fly (Anatalanta aptera) and an introduced ground beetle (Merizodus soledadinus) on the Kerguelen Islands

The suite of environments and anthropogenic modifications of sub-Antarctic islands provide key opportunities to improve our understanding of the potential consequences of climate change and biological species invasions on terrestrial ecosystems. The profound impact of human introduced invasive species on indigenous biota, and the facilitation of establishment as a result of changing thermal conditions, has been well documented on the French sub-Antarctic Kerguelen Islands (South Indian Ocean). The present study provides an overview of the vulnerability of sub-Antarctic terrestrial communities with respect to two interacting factors, namely climate change and alien insects. We present datasets assimilated by our teams on the Kerguelen Islands since 1974, coupled with a review of the literature, to evaluate the mechanism and impact of biological invasions in this region. First, we consider recent climatic trends of the Antarctic region, and its potential influence on the establishment, distribution and abundance of alien insects, using as examples one fly and one beetle species. Second, we consider to what extent limited gene pools may restrict alien species' colonisations. Finally, we consider the vulnerability of native communities to aliens using the examples of one beetle, one fly, and five aphid species taking into consideration their additional impact as plant virus vectors. We conclude that the evidence assimilated from the sub-Antarctic islands can be applied to more complex temperate continental systems as well as further developing international guidelines to minimise the impact of alien species.

Stratigraphic distribution of marine palynomorph species recorded for the Miocene of ODP Hole 105-645E (Table 1)

A total of 145 samples were analyzed for palynology, and all were found to be productive. Residues are dominated by pollen, terrestrial spores, and land plant tissues. Marine palynomorphs occur in all samples, which allowed us to recognize five Miocene dinocyst assemblage zones. Dinocyst assemblages indicate cool-water conditions and suggest a neritic rather than fully oceanic environment, with not only North Atlantic and Norwegian Sea affinities, but also containing both notable protoperidiniacean and possible endemic elements. Dinocyst assemblages indicate an early Miocene age for the bottom of Hole 645E and an age no younger than early late Miocene (Sample 105-645E-24R, CC) near the top of the interval studied. These age assignments provide an estimated initiation of ice rafting in Baffin Bay at between 7.4 and 9.5 Ma. Increased terrigenous influx and apparent disappearance of certain dinocyst taxa occur in the middle to late Miocene and may be related to oceanographic changes or climatic deterioration. Spores and pollen indicate a climate that varied within a temperate regime during the early and middle to early late Miocene, followed by climatic deterioration. Four new dinocyst species are described: Batiacasphaera gemmata, Impletosphaeridium prolatum, Operculodinium vacuolatum, and Selenopemphix brevispinosa. The acritarch genus Cyclopsiella Drugg and Loeblich is emended, and two new combinations have been created: Cyclopsiella granosa (Matsuoka) and Cyclopsiella? laevigata (Chateauneuf). Cyclopsiella granosa (Matsuoka) n. comb. is considered a subjective junior synonym of Cyclopsiella granulata He and Li. Ascostomocystis granulatus Chateauneuf has been provisionally allocated to Cyclopsiella and renamed Cyclopsiella? chateauneufii. Two new acritarch species are described: Cyclopsiella spiculosa and Cymatiosphaera! baffinensis.

Photosynthetically active radiation during the experiment, and lipid content of sub- and intertidal specimens of the endemic Antarctic red alga, Palmaria decipiens

In coastal waters, Antarctic rhodophytes are exposed to harsh environmental conditions throughout the year, like low water temperatures ranging from -1.8°C to 2°C and high light during the summer season. Photosynthetic performance under these conditions may be affected by slowed down enzymatic reactions and the increased generation of reactive oxygen species. The consequence might be a chronic photoinhibition of photosynthetic primary reactions related to increased fragmentation of the D1 reaction centre protein in photosystem II. It is hypothesized that changes in lipid composition of biomembranes may represent an adaptive trait to maintain D1 turnover in response to temperature variation. The interactive effects of high light and low temperature were studied on an endemic Antarctic red alga, Palmaria decipiens, sampled from two shore levels, intertidal and subtidal, and exposed to mesocosm experiments using two levels of natural solar radiation and two different temperature regimes (2-5°C and 5-10°C). During the experimental period of 23 days, maximum quantum yield of photosynthesis decreased in all treatments, with the intertidal specimens exposed at 5-10°C being most affected. On the pigment level, a decreasing ratio of phycobiliproteins to chlorophyll a was found in all treatments. A pronounced decrease in D1 protein concentration occurred in subtidal specimens exposed at 2-5°C. Marked changes in lipid composition, i.e. the ratio of saturated to unsaturated fatty acids, indicated an effective response of specimens to temperature change. Results provide new insights into mechanisms of stress adaptation in this key species of shallow Antarctic benthic communities.