Parameterizing a Simple Potential Energy Function Appropriate for Vibrational Frequencies Using Molecular Dynamics

A Maple scheme for quickly parameterizing vibrational potential energy functions is presented. As an example, the potential energy function's parameters for the vibrational motions in H_2O_2 are obtained assuming the simplest potential energy function. This paper was originally written as a research paper, but rejected by the referees. It is therefore being edited into an ``educational'' paper for student usage.

Molecular Dynamics and the Diatomic Molecule as Harmonic Oscillator and Rigid Rotor

The HCl molecule is simulated (using Maple) in its dynamics, for both vibrational (and implied) rotational motions. A discussion of the center of mass transformations involved is part of the total presentation.

Molecular Machanics of Water Monomer-Maple Code

This is the Maple code to support the molecular dynamics of a water monomer molecule, allowing investigation of the classical vibrations of this molecule.

Molecular Mechanics of Water Monomer

Simulation of the classical molecular dynamics of a water molecule can be useful in explaining normal modes of motion, Fourier Transforms, and fundamental frequencies of vibration, as illustrated herein.