Molecular Dynamics Simulations of the d(TAT) Triple Helix

Molecular dynamics (MD) simulations have been used to study the dynamical and time-averaged characteristics of the DNA triple helix d(T)10âd(A)10âd(T)10. The structures sampled during the trajectory resemble closely the B-type model for the DNA triplex proposed on the basis of NMR data, although there are some subtle differences. Alternative P- and A-type conformations for the triplex, suggested from X-ray experiments, are not predicted to contribute significantly to the structure of the DNA triplex in solution. Comparison with the best available experimental data supports the correctnes of the MD-generated structures. The analysis of the collected data gives a detailed picture of the characteristics of triple-helix DNA. A new and interesting pattern of hydration, specific for triplex DNA, is an important observation. The results suggest that molecular dynamics can be useful for the study of novel nucleic acid structures.

Charles P. Daly's Gendered Geography, 1860-1890

The American Geographical Society (AGS) serves as a case study for considering the nature of “gendered geography” in the nineteenth-century United States. This article links the ideals and programmatic interests of the society—which were fundamentally commercial in nature—with the personal subjectivity of its chief protagonist, Charles P. Daly, AGS president from 1864 until his death in 1899. Daly is presented as an “armchair explorer” who shifted the focus of the society away from statistical representations of the world toward the action packed narrative descriptions of the world supplied by embodied explorers in the field. The gender dynamics associated with the center versus the field provide a useful way to contrast both sides of Daly’s persona—as a scholar performing detached, careful study yet someone who also derived a great deal of personal authority by staging popular and dramatic spectacles in New York City, speechifying and presenting himself on stage at geographical society meetings with returning heroic explorers. Daly not only served as New York’ smost influential access point to the Arctic at the time, he also served as an important node in the reproduction of masculine culture in promotion of a particularly masculinist commercial geography. Key Words: American Geographical Society, Charles Patrick Daly, gender and geography, history of geography, masculinity.