Investigation of the electric field enhanced PNA-DNA hybridization on Au surface by using surface plasmon field-enhanced fluorescence spectroscopy (SPFS)

Recently, the surface plasmon field-enhanced fluorescence spectroscopy (SPFS) was developed as a kinetic analysis and a detection method with dual- monitoring of the change of reflectivity and fluorescence signal for the interfacial phenomenon. A fundamental study of PNA and DNA interaction at the surface using surface plasmon fluorescence spectroscopy (SPFS) will be investigated in studies. Furthermore, several specific conditions to influence on PNA/DNA hybridization and affinity efficiency by monitoring reflective index changes and fluorescence variation at the same time will be considered. In order to identify the affinity degree of PNA/DNA hybridizaiton at the surface, the association constant (kon) and the dissociation constant (koff) will be obtained by titration experiment of various concentration of target DNA and kinetic investigation. In addition, for more enhancing the hybridization efficiency of PNA/DNA, a study of polarized electric field enhancement system will be introduced and performed in detail. DNA is well-known polyelectrolytes with naturally negative charged molecules in its structure. With polarized electrical treatment, applying DC field to the metal surface, which PNA probe would be immobilized at, negatively charged DNA molecules can be attracted by electromagnetic attraction force and manipulated to the close the surface area, and have more possibility to hybridize with probe PNA molecules by hydrogen bonding each corresponding base sequence. There are several major factors can be influenced on the hybridization efficiency.

Tracer diffusion at water-oil interfaces studied by fluorescence correlation spectroscopy

The adsorption of particles and surfactants at water-oil interfaces has attracted continuous attention because of its emulsion stabilizing effect and the possibility to form two-dimensional materials. Herein, I studied the interfacial diffusion of single molecules and nanoparticles at water-oil interfaces using fluorescence correlation spectroscopy. rnrnFluorescence correlation spectroscopy (FCS) is a promising technique to study diffusion of fluorescent tracers in diverse conditions. This technique monitors and analyzes the fluorescence fluctuation caused by single fluorescent tracers coming in and out of a diffraction-limited observation volume “one at a time”. Thus, this technique allows a combination of high precision, high spatial resolution and low tracer concentration. rnrnIn chapter 1, I discussed some controversial questions regarding the properties of water-hydrophobic interfaces and also introduced the current progress on the stability and dynamic of single nanoparticles at water-oil interfaces. The materials and setups I used in this thesis were summarized in chapter 2. rnrnIn chapter 3, I presented a new strategy to study the properties of water-oil interfaces. The two-dimensional diffusion of isolated molecular tracers at water/n-alkane interfaces was measured using fluorescence correlation spectroscopy. The diffusion coefficients of larger tracers with a hydrodynamic radius of 4.0 nm agreed well with the values calculated from the macroscopic viscosities of the two bulk phases. However, for small molecule tracers with hydrodynamic radii of only 1.0 and 0.6 nm, notable deviations were observed, indicating the existence of an interfacial region with a reduced effective viscosity. rnrnIn chapter 4, the interfacial diffusion of nanoparticles at water-oil interfaces was investigated using FCS. In stark contrast to the interfacial diffusion of molecular tracers, that of nanoparticles at any conditions is slower than the values calculated in accordance to the surrounding viscosity. The diffusion of nanoparticles at water-oil interfaces depended on the interfacial tension of liquid-liquid interfaces, the surface properties of nanoparticles, the particle sizes and the viscosities of surrounding liquid phases. In addition, the interfacial diffusion of nanoparticles with Janus motif is even slower than that of their symmetric counterparts. Based on the experimental results I obtained, I drew some possibilities to describe the origin of nanoparticle slowdown at water-oil interfaces.

The search for the neutron electric dipole moment

A permanent electric dipole moment of the neutron violates time reversal as well as parity symmetry. Thus it also violates the combination of charge conjugation and parity symmetry if the combination of all three symmetries is a symmetry of nature. The violation of these symmetries could help to explain the observed baryon content of the Universe. The prediction of the Standard Model of particle physics for the neutron electric dipole moment is only about 10e−32 ecm. At the same time the combined violation of charge conjugation and parity symmetry in the Standard Model is insufficient to explain the observed baryon asymmetry of the Universe. Several extensions to the Standard Model can explain the observed baryon asymmetry and also predict values for the neutron electric dipole moment just below the current best experimental limit of d n < 2.9e−26 ecm, (90% C.L.) that has been obtained by the Sussex-RAL-ILL collaboration in 2006. The very same experiment that set the current best limit on the electric dipole moment has been upgraded and moved to the Paul Scherrer Institute. Now an international collaboration is aiming at increasing the sensitivity for an electric dipole moment by more than an order of magnitude. This thesis took place in the frame of this experiment and went along with the commissioning of the experiment until first data taking. After a short layout of the theoretical background in chapter 1, the experiment with all subsystems and their performance are described in detail in chapter 2. To reach the goal sensitivity the control of systematic errors is as important as an increase in statistical sensitivity. Known systematic efects are described and evaluated in chapter 3. During about ten days in 2012, a first set of data was measured with the experiment at the Paul Scherrer Institute. An analysis of this data is presented in chapter 4, together with general tools developed for future analysis eforts. The result for the upper limit of an electric dipole moment of the neutron is |dn| ≤ 6.4e−25 ecm (95%C.L.). Chapter 5 presents investigations for a next generation experiment, to build electrodes made partly from insulating material. Among other advantages, such electrodes would reduce magnetic noise, generated by the thermal movement of charge carriers. The last Chapter summarizes this work and gives an outlook.