Diversity of microbial communities at shallow-hydrothermal vents off Dominica, Lesser Antilles

Hydrothermal vents are often compared to desert oases, because of the presence of highly diverse and abundant biotic communities inhabiting these extreme environments. Nevertheless, the microbial communities associated with shallow-hydrothermal systems have been poorly studied. Hydrothermal activity at Dominica Island is quite well known under the geological and geochemical aspects, but no previous information existed about the microbial communities associated to this area. This thesis is therefore targeting the microbiology of hydrothermal sediments combining geochemical and molecular biological investigations, focusing on differences between hydrothermal vents and background (i.e. control) areas, and between hydrothermal sites. It was also intended to assess relationship between geochemical parameters and microbial diversity at the two hydrothermally impacted sites. Two shallow-sea hydrothermal vents located south-west off Dominica Island (Lesser Antilles) have been investigated in this study: Champagne Hot Springs and Soufriere Bay offshore vent. During this study, sediments for geochemical and molecular analyses were collected every 2 cm from the two impacted areas and from two control sites not associated with hydrothermal activity; in situ temperatures measurements were also taken every 5 cm deep in the sediment for all the sites. A geochemical characterization of the sediment porewater was performed through the analysis of several elements’ concentrations (i.e. H2S, Cl-, Br-, SO42-, Fe2+, Na+, K+, B+, Si+). Microbial communities at the different sites were studied by Automated Intergenic Spacer Analysis (ARISA). Inspection of the operational taxonomic units (OTUs) distribution was performed, as well as statistical analyses for communities’ structure and composition differences, and for changes of β-diversity along with sediment geochemistry. Data suggested that mixing between hydrothermal fluids and seawater results in distinct different environmental gradients and potential ecological niches between the two investigated hydrothermal vents, reflecting a difference in microbial community structures between them.

Morphological-molecular taxonomy and population genetic structure of common and Egyptian soles of the Adriatic Sea

A total of 352 specimens were analyzed to achieve the different aims of this thesis. 255 central-northern Adriatic specimens of S. solea and S. aegyptiaca were molecularly analysed using microsatellite locus Sos(AC)40 and 205 also morphologically due to evaluate the abundance and the distribution of the cryptic species S. aegyptiaca and to confirm morphologic analyses. Morphological and molecular analyses comparated show a correspondence of 96%. A combined morphologic approach could be proposed to apply multiple criteria on the analyzed external morphological keys. The Adriatic Egyptian soles may lives in shallow waters (up 30 m) and in brackish lagoon. 127 samples of Adriatic common sole added to 326 samples of previous studies showed, using mitochondrial marker (CytB), that the Adriatic Sea as contact zone between Tyrrhenian and Aegean Sea, the divergence within the Adriatic Sea is low but significant between central-north and south, with a longitudinal strong gene flow in central-northern side. It’s also showed as in the Adriatic Sea two near-panmictic populations of common sole exist.

The routes of the Mediterranean Sea circulation

The Mediterranean Sea is a semi-enclosed basin connected to the Atlantic Ocean through the narrow and shallow Strait of Gibraltar and further subdivided in two different sub-basins, the Eastern Mediterranean and the Western Mediterranean, connected through the Stait of Sicily. On annual basis, a net heat budget of −7 W/m2, combined with exceeding evaporation over precipation and runoff together with wind stress, is responsible for the antiestuarine character of the zonal thermoaline circulation. The outflow at Gibraltar Strait is mainly composed of Levantine Intermediate Water (LIW) and deep water masses formed in the Western Mediterranean Sea. The aim of this thesis is to validate and quantitatively assess the main routes of water masses composing the ouflow at Gibraltar Strait, using for the first time in the Mediterranean Sea a lagrangian interpretation of the eulerian velocity field produced from an eddy-resolving reanalysis dataset, spanning from 2000 to 2012. A lagrangian model named Ariane is used to map out three-dimensional trajectories in order to describe the pathways of water mass transport from the Strait of Sicily, the Gulf of Lyon and the Northern Tyrrhenian Sea to the Gibraltar Strait. Numerical experiments were carried out by seeding millions of particles in the Strait of Gibraltar and following them backwards in time to track the origins of water masses and transport exchanged between the different sections of the Mediterranean. Finally, the main routes of the intermediate and deep water masses are reconstructed from virtual particles trajectories, which highlight the role of the Western Mediterranean Deep Water (WMDW) as the main contributor to the Gibraltar Strait outflow. For the first time, the quantitative description of the flow of water masses coming from the Eastern Mediterranean towards the Gibraltar Strait is provided and a new route that directly links the Northern Tyrrhenian Sea to Gibralatr Strait has been detected.