Identification of stock units of Mullus barbatus (Linnaeus, 1758) in the Italian seas: development of genomic 2b-RAD markers and biological variation analysis.

This thesis is settled within the STOCKMAPPING project, which represents one of the studies that were developed in the framework of RITMARE Flagship project. The main goals of STOCKMAPPING were the creation of a genomic mapping for stocks of demersal target species and the assembling of a database of population genomic, in order to identify stocks and stocks boundaries. The thesis focuses on three main objectives representing the core for the initial assessment of the methodologies and structure that would be applied to the entire STOCKMAPPING project: individuation of an analytical design to identify and locate stocks and stocks boundaries of Mullus barbatus, application of a multidisciplinary approach to validate biological methods and an initial assessment and improvement for the genotyping by sequencing technique utilized (2b-RAD). The first step is the individuation of an analytical design that has to take in to account the biological characteristics of red mullet and being representative for STOCKMAPPING commitments. In this framework a reduction and selection steps was needed due to budget reduction. Sampling areas were ranked according the individuation of four priorities. To guarantee a multidisciplinary approach the biological data associated to the collected samples were used to investigate differences between sampling areas and GSAs. Genomic techniques were applied to red mullet for the first time so an initial assessment of molecular protocols for DNA extraction and 2b-RAD processing were needed. At the end 192 good quality DNAs have been extracted and eight samples have been processed with 2b-RAD. Utilizing the software Stacks for sequences analyses a great number of SNPs markers among the eight samples have been identified. Several tests have been performed changing the main parameter of the Stacks pipeline in order to identify the most explicative and functional sets of parameters.

Stock boundaries of Parapenaeus longirostris (Lucas, 1846) populations in the Italian seas: Development of genomic 2b-RAD markers and biological variation analysis.

This thesis is developed in the contest of Ritmare project WP1, which main objective is the development of a sustainable fishery through the identification of populations boundaries in commercially important species in Italian Seas. Three main objectives are discussed in order to help reach the main purpose of identification of stock boundaries in Parapenaeus longirostris: 1 -Development of a representative sampling design for Italian seas; 2 -Evaluation of 2b-RAD protocol; 3 -Investigation of populations through biological data analysis. First of all we defined and accomplished a sampling design which properly represents all Italian seas. Then we used information and data about nursery areas distribution, abundance of populations and importance of P. longirostris in local fishery, to develop an experimental design that prioritize the most important areas to maximize the results with actual project funds. We introduced for the first time the use of 2b-RAD on this species, a genotyping method based on sequencing the uniform fragments produced by type IIB restriction endonucleases. Thanks to this method we were able to move from genetics to the more complex genomics. In order to proceed with 2b-RAD we performed several tests to identify the best DNA extraction kit and protocol and finally we were able to extract 192 high quality DNA extracts ready to be processed. We tested 2b-RAD with five samples and after high-throughput sequencing of libraries we used the software “Stacks” to analyze the sequences. We obtained positive results identifying a great number of SNP markers among the five samples. To guarantee a multidisciplinary approach we used the biological data associated to the collected samples to investigate differences between geographical samples. Such approach assures continuity with other project, for instance STOCKMED, which utilize a combination of molecular and biological analysis as well.

Studio del comportamento di poli-alfa-olefine come modificatori di viscosità negli oli lubrificanti

Il buon funzionamento di una qualsiasi tipologia di motore prevede l’utilizzo di un componente che abbia il compito di lubrificare le parti meccaniche in movimento, come, ad esempio, l’olio motore per l’automobile. Un fattore determinante nella scelta dell’olio è la variazione della sua viscosità in relazione alla variazione di temperatura, poiché la temperatura di esercizio di un macchinario è solitamente diversa dalla temperatura di avviamento. Tale valore viene identificato in maniera assoluta dal Viscosity Index (VI). L’olio motore è una formulazione complessa in cui sono presenti l’olio base ed una serie di additivi, tra cui molto importante è il modificatore di viscosità (Viscosity Index Improver, VII), che migliora il VI e permette di utilizzare lo stesso olio a basse ed alte temperature (olio multigrade). Come VII possono essere utilizzate diverse tipologie di polimeri solubili in olio, che variano per caratteristiche e target di mercato. La famiglia presa in esame in questa tesi è quella delle poli-alfa-olefine, utilizzate prevalentemente con oli base minerali, e più precisamente copolimeri etilene/propilene. Sono state analizzate le proprietà che questa famiglia ben nota di OCP (Olefin CoPolymer) ingenera nel sistema base-polimero. In particolare si è cercato di correlare le proprietà molecolari del polimero (composizione, peso molecolare e paracristallinità) con le proprietà “tecnologico-applicative” di ispessimento, stabilità meccanica al taglio, punto di non scorrimento, avviamento a freddo, pompabilità a freddo. L’attività è proseguita con la progettazione di un modello fisico, con l’obiettivo di predire il comportamento tecnologico del sistema olio-polimero in funzione delle proprietà molecolari di polimeri appartenenti alla classe delle poli-alfa-olefine lineari, esaminando anche le proprietà tecnologiche di un omopolimero sperimentale.