The routes of the Mediterranean Sea circulation

The Mediterranean Sea is a semi-enclosed basin connected to the Atlantic Ocean through the narrow and shallow Strait of Gibraltar and further subdivided in two different sub-basins, the Eastern Mediterranean and the Western Mediterranean, connected through the Stait of Sicily. On annual basis, a net heat budget of −7 W/m2, combined with exceeding evaporation over precipation and runoff together with wind stress, is responsible for the antiestuarine character of the zonal thermoaline circulation. The outflow at Gibraltar Strait is mainly composed of Levantine Intermediate Water (LIW) and deep water masses formed in the Western Mediterranean Sea. The aim of this thesis is to validate and quantitatively assess the main routes of water masses composing the ouflow at Gibraltar Strait, using for the first time in the Mediterranean Sea a lagrangian interpretation of the eulerian velocity field produced from an eddy-resolving reanalysis dataset, spanning from 2000 to 2012. A lagrangian model named Ariane is used to map out three-dimensional trajectories in order to describe the pathways of water mass transport from the Strait of Sicily, the Gulf of Lyon and the Northern Tyrrhenian Sea to the Gibraltar Strait. Numerical experiments were carried out by seeding millions of particles in the Strait of Gibraltar and following them backwards in time to track the origins of water masses and transport exchanged between the different sections of the Mediterranean. Finally, the main routes of the intermediate and deep water masses are reconstructed from virtual particles trajectories, which highlight the role of the Western Mediterranean Deep Water (WMDW) as the main contributor to the Gibraltar Strait outflow. For the first time, the quantitative description of the flow of water masses coming from the Eastern Mediterranean towards the Gibraltar Strait is provided and a new route that directly links the Northern Tyrrhenian Sea to Gibralatr Strait has been detected.

A study of air-sea interaction processes on water mass formation and upwelling in the Mediterranean sea

Air-sea interactions are a key process in the forcing of the ocean circulation and the climate. Water Mass Formation is a phenomenon related to extreme air-sea exchanges and heavy heat losses by the water column, being capable to transfer water properties from the surface to great depth and constituting a fundamental component of the thermohaline circulation of the ocean. Wind-driven Coastal Upwelling, on the other hand, is capable to induce intense heat gain in the water column, making this phenomenon important for climate change; further, it can have a noticeable influence on many biological pelagic ecosystems mechanisms. To study some of the fundamental characteristics of Water Mass Formation and Coastal Upwelling phenomena in the Mediterranean Sea, physical reanalysis obtained from the Mediterranean Forecating System model have been used for the period ranging from 1987 to 2012. The first chapter of this dissertation gives the basic description of the Mediterranean Sea circulation, the MFS model implementation, and the air-sea interaction physics. In the second chapter, the problem of Water Mass Formation in the Mediterranean Sea is approached, also performing ad-hoc numerical simulations to study heat balance components. The third chapter considers the study of Mediterranean Coastal Upwelling in some particular areas (Sicily, Gulf of Lion, Aegean Sea) of the Mediterranean Basin, together with the introduction of a new Upwelling Index to characterize and predict upwelling features using only surface estimates of air-sea fluxes. Our conclusions are that latent heat flux is the driving air-sea heat balance component in the Water Mass Formation phenomenon, while sensible heat exchanges are fundamental in Coastal Upwelling process. It is shown that our upwelling index is capable to reproduce the vertical velocity patterns in Coastal Upwelling areas. Nondimensional Marshall numbers evaluations for the open-ocean convection process in the Gulf of Lion show that it is a fully turbulent, three-dimensional phenomenon.

Spatial-temporal variability of the benthic communities in Ravenna harbour using Autonomous Reef Monitoring Structures (ARMS) with focus on Non-Indigenous Species (NIS)

A Non-Indigenous Species (NIS) is defined as an organism, introduced outside its natural past or present range of distribution by humans, that successfully survives, reproduces, and establish in the new environment. Harbors and tourist marinas are considered NIS hotspots, as they are departure and arrival points for numerous vessels and because of the presence of free artificial substrates, which facilitate colonization by NIS. To early detect the arrival of new NIS, monitoring benthic communities in ports is essential. Autonomous Reef Monitoring Structures (ARMS) are standardized passive collectors that are used to assess marine benthic communities. Here we use an integrative approach based on multiple 3-month ARMS deployment (from April 2021 to October 2022) to characterize the benthic communities (with a focus on NIS) of two sites: a commercial port (Harbor) and a touristic Marina (Marina) of Ravenna. The colonizing sessile communities were assessed using percentage coverage of the taxa trough image analyses and vagile fauna (> 2 mm) was identified morphologically using a stereomicroscope and light microscope. Overall, 97 taxa were identified and 19 of them were NIS. All NIS were already observed in port environments in the Mediterranean Sea, but for the first time the presence of the polychaete Schistomeringos cf. japonica (Annenkova, 1937) was observed; however molecular analysis is needed to confirm its identity. Harbor and Marina host significantly different benthic communities, with significantly different abundance depending on the sampling period. While the differences between sites are related to their different environmental characteristic and their anthropogenic pressures, differences among times seems related to the different life cycle of the main abundant species. This thesis evidenced that ARMS, together with integrative taxonomic approaches, represent useful tools to early detect NIS and could be used for a long-term monitoring of their presence.

DNA barcoding taxonomy and diversity of the Mediterranean sharks and rays

Elasmobranchs are an important by-catch of commercial fisheries targeting bony fishes. Fisheries targeting sharks are rare, but usually almost all specimen bycatched are marketed. They risk extinction if current fishing pressure continues (Ferretti et al., 2008). Accurate species identification is critical for the design of sustainable fisheries and appropriate management plans, especially since not all species are equally sensitive to fishing pressure (Walker & Hislop 1998). The identification of species constitutes the first basic step for biodiversity monitoring and conservation (Dayrat B et al., 2005). More recently, mtDNA sequencing has also been used for species identification and its use has become widespread under the DNA Barcode initiative (e.g. Hebert et al. 2003a, 2003b; Ward et al. 2005, 2008a; Moura et al 2008; Steinke et al. 2009). The aims of this work were: 1) identify sharks and skates species using DNA barcode; 2) compare species of different provenance; 3) use DNA barcode for misidentified species. Using DNA barcode 15 species of sharks (Alopias vulpinus, Centrophorus granulosus, Cetorhinus maximus, Dalatias licha, Etmopterus spinax, Galeorhinus galeus, Galeus melastomus, Heptranchias perlo, Hexanchus griseus, Mustelus mustelus, Mustelus punctulatus, Oxynotus centrina, Scyliorhinus canicula Squalus acanthias, Squalus blainville), 1 species of chimaera (Chimaera monstrosa) and 21 species of rays/skayes (Dasyatis centroura, Dasyatis pastinaca, Dasyatis sp., Dipturus nidarosiensis, Dipturus oxyrinchus, Leucoraja circularis, Leucoraja melitensis, Myliobatis aquila, Pteromylaeus bovinus, Pteroplatytrygon violacea, Raja asterias, Raja brachyura, Raja clavata, Raja miraletus, Raja montagui, Raja radula, Raja polystigma, Raja undulata, Rostroraja alba, Torpedo marmorata, Torpedo nobiliana, Torpedo torpedo) was identified.

Citizen science as a tool for the environmental quality assessment of the Mediterranean coastal habitats

The growing need to assess the environmental status of the Mediterranean coastal marine habitats and the large availability of data collected by Reef Check Italia onlus (RCI) volunteers suggest the possibility to develop innovative and reliable indices that may support decision makers in applying conservation strategies. The aims of this study were to check the reliability of data collected by RCI volunteers, analyse the spatial and temporal distribution of RCI available data, resume the knowledge on the biology and ecology of the monitored species, and develop innovative indices to asses the ecological quality of Mediterranean subtidal rocky shores and coralligenous habitats. Subtidal rocky shores and coralligenous were chosen because these are the habitats more attractive for divers; therefore mlst data are referring to them, moreover subtidal rocky bottom are strongly affected by coastal urbanisation, land use, fishing and tourist activities, that increase pollution, turbidity and sedimentation. Non-indigenous species (NIS) have been recognized as a major threat to the integrity of Mediterranean native communities because of their proliferation, spread and impact on resident communities. Monitoring of NIS’ spreading dynamics at the basin spatial scale is difficult but urgent. According to a field test, the training provided by RCI appears adequate to obtain reliable data by volunteers. Based on data collected by RCI volunteers, three main categories of indices were developed: indices based on species diversity, indices on the occurrence non-indigenous species, and indices on species sensitive toward physical, chemical and biological disturbances. As case studies, indices were applied to stretches of coastline defined according to management criteria (province territories and marine protected areas). The assessments of ecological quality in the Tavolara Marine Protected Area using the species sensitivities index were consisten with those previously obtained with traditional methods.

Study on health status and remediation potential of Phragmites australis employed in an Emilia Romagna (IT) Constructed Wetland to assess zonal variability of the facility.

Phragmites australis (Cav.) Trin. ex Steud. is a hydrophyte particularly resistant to harsh conditions, e.g. drought, high salinity, contaminants, such as heavy metals and toxic molecules, and high nutrients concentrations. These resistances render the plant suitable for water depuration, where its particular metabolism is exploited to remove pollutants and excessive nutrients from the environment. In constructed wetlands, this principle is applied to phyto-purify wastewater with various origins, such as industrial, agricultural and household, with the aim to improve its quality to an extent which would render its reuse possible. In the framework of a pre-existing project of Department of Agricultural and Food Sciences (DiSTAl), this work integrates the knowledge and data relative to an Emilia Romagna (IT) constructed wetland plant, in order to expand the knowledge about this particular facility and of the system in general. By assaying antioxidants, both non- enzymatic and enzymatic, chlorophylls content and net photosynthetic rates, and by measuring the elemental composition of the specimens, the health status and the elemental uptake of the wetland plants sampled in different areas were investigated. The results were compared amongst the examined specimens with the aim to detect areas where there may be a higher stress due to a different wastewater composition, potentially varying along the constructed route. In addition, different parameters regarding the extraction and assay protocols were investigated, in order to optimise the procedure and to select the best conditions to perform the analyses, as well as to integrate information missing in literature or found as contradictory.

Analysis of the Mediterranean tropical-like cyclone Numa from a numerical model simulation

I Medicane sono rari cicloni che si sviluppano sul Mar Mediterraneo e presentano caratteristiche dei cicloni tropicali, come la forma a spirale delle bande di nubi, un occhio privo di venti e nubi, venti intensi nella banda che circonda l’occhio e la presenza di un nucleo caldo. Nel presente lavoro, è stata compiuta un’analisi del Medicane Numa, verificatosi nel novembre del 2017, utilizzando gli output della simulazione del modello RAMS-ISAC. L’obiettivo di questa tesi è l’identificazione e la descrizione delle caratteristiche tropicali di Numa, focalizzandosi sulla descrizione dei diversi stadi di sviluppo del ciclone. Il sistema di bassa pressione è stato identificato utilizzando la pressione sul livello del mare, mentre l’anomalia termica e il vento orizzontale hanno permesso una descrizione della struttura del Medicane e del suo nucleo caldo. Un’illustrazione della struttura a spirale delle bande di nubi e dell’occhio è stata ottenuta con il grafico dei rapporti di mescolanza delle idrometeore di nubi e pioggia. Questi parametri hanno consentito di ricavare il diametro dell’occhio, pari a 75 km, mentre il diametro del Medicane è risultato 230 km. Numa ha registrato una velocità massima del vento in superficie di 20 m/s nella banda adiacente all’occhio del ciclone. Il diagramma di Hart dello spazio delle fasi del ciclone ha confermato la natura simil-tropicale di Numa e ne ha descritto l’evoluzione, identificando la transizione da sistema a caratteri tropicali a sistema ibrido. La traiettoria nello spazio delle fasi ha consentito l’identificazione delle sottofasi dell’evoluzione di Numa, confermate dai grafici dell’evoluzione temporale dei parametri menzionati in precedenza. L’analisi ha mostrato il ruolo cruciale della presenza di una struttura organizzata nel determinare l’intensità e la durata delle caratteristiche tropicali. Tutti i parametri hanno evidenziato la simmetria della struttura durante la persistente fase matura di Numa.

Genetic variability and differentiation in the Mediterranean endemic starry ray Raja asterias (Delaroche, 1809)

The present study deal with the population structure and connectivity of the Mediterranean endemic starry ray Raja asterias (Delaroche, 1809) in the Western and Eastern Mediterranean basin. A panel of eight microsatellite loci which cross-amplify in Rajidae (El Nagar, 2010) was used to assess population connectivity and structure. Those aims were investigated by analyzing the genetic variation of 9 population sample for a total of 185 individuals collected during past scientific surveys (MEDITS, GRUND), commercial trawling and also directly at fish markets. The purpose of this thesis is to estimate the genetic divergence occurring between the Mediterranean populations and, in particular, to assess the presence of any barrier (geographic, hydrogeological and biological) to gene flow for this species. Different statistical approaches were performed to reach this aim evaluating both the genetic diversity (nucleotide diversity, allelic richness, observed and expected heterozygosity and Hardy-Weinberg equilibrium test) and the population differentiation patterns (pairwise Fst estimated and population structure analysis). The results obtained from the analysis of the microsatellite dataset suggest a geographic and genetic separation between the starry ray populations of the Mediterranean basin into three or four distinct groups: Western and Eastern Mediterranean basins and Sicilian coast always clustering as an independent group and Algeria which could be or not considered another separate group. The data were discussed from both an evolutionary and a conservation point of view and in relation to previous results obtained by the analysis of mitochondrial marker. A comparison with other Mediterranean demersal skate species was performed in order to better contextualise our results. Finally, our results could offer useful information to protect vulnerable species as R. asterias and developing effective conservation plans in the Mediterranean.

Genetic characterisation and global comparison of ancient Mediterranean Great White Sharks population (Carcharodon carcharias, L.1758)

This study poses as its objective the genetic characterization of the ancient population of the Great White shark, Carcharodon carcharias, L.1758, present in the Mediterranean Sea. Using historical evidence, for the most part buccal arches but also whole, stuffed examples from various national museums, research institutes and private collections, a dataset of 18 examples coming from the Mediterranean Sea has been created, in order to increase the informations regarding this species in the Mediterranean. The importance of the Mediterranean provenance derives from the fact that a genetic characterization of this species' population does not exist, and this creates gaps in the knowledge of this species in the Mediterranean. The genetic characterization of the individuals will initially take place by the extraction of the ancient DNA and the analysis of the variations in the sequence markers of the mitochondrial DNA. This approach has allowed the genetic comparison between ancient populations of the Mediterranean and contemporary populations of the same geographical area. In addition, the genetic characterization of the population of white sharks of the Mediterranean, has allowed a genetic comparison with populations from global "hot spots", using published sequences in online databases (NCBI, GenBank). Analyzing the variability of the dataset, both in terms space and time, I assessed the evolutionary relationships of the Mediterranean population of Great Whites with the global populations (Australia/New Zealand, South Africa, Pacific USA, West Atlantic), and the temporal trend of the Mediterranean population variability. This method based on the sequencing of two portions of mitochondrial DNA genes, markers showed us how the population of Great White Sharks in the Mediterranean, is genetically more similar to the populations of the Australia Pacific ocean, American Pacific Ocean, rather than the population of South Africa, and showing also how the population of South Africa is abnormally distant from all other clusters. Interestingly, these results are inconsistent with the results from tagging of this species. In addition, there is evidence of differences between the ancient population of the Mediterranean with the modern one. This differentiation between the ancient and modern population of white shark can be the result of events impacting on this species occurred over the last two centuries.

Analysis of the Variability of Carbonate System Parameters in the North-East Atlantic.

The purpose of this thesis is to analyse the spatial and temporal variability of the aragonite saturation state (ΩAR), commonly used as an indicator of ocean acidification, in the North-East Atlantic. When the aragonite saturation state decreases below a certain threshold, ΩAR <1, calcifying organisms (i.e. molluscs, pteropods, foraminifera, crabs, etc.) are subject to dissolution of shells and aragonite structures. This objective agrees with the challenge 'Ocean, climate change and acidification' of the EU COST Ocean Governance for Sustainability project, which aims to combine the information collected on the state of health of the oceans. Two open-sources data products, EMODnet and GLODAPv2, have been integrated and analysed for the first time in the North-East Atlantic region. The integrated dataset contains 1038 ΩAR vertical profiles whose time distribution spans from 1970 to 2014. The ΩAR has been computed from CO2SYS software considering different combinations of input parameters, pH, Total Alkalinity (TAlk) and Dissolved Inorganic Carbon (DIC), associated with Temperature, Salinity and Pressure at in situ conditions. A sensitivity analysis has been performed to better understand the data consistency of ΩAR computed from the different combinations of pH, Talk and DIC and to verify the difference among observed TAlk and DIC parameters and their output values from the CO2SYS tool. Maps of ΩAR have been computed with the best data coverage obtained from the two datasets, at different levels of depth in the area of investigation and they have been compared to the work of Jiang et al. (2015). The results are consistent and show similar horizontal and vertical patterns. The study highlights some aragonite undersaturated values (ΩAR <1) below 500 meters depth, suggesting a potential effect of acidification in the considered time period. This thesis aims to be a preliminary work for future studies that will be able to design the ΩAR variability on a decadal distribution based on the extended time-series acquired in this work.

Evaluation of the power production performance of the wavepiston, wave energy converter

In the early 1970 the community has started to realize that have as a main principle the industry one, with the oblivion of the people and health conditions and of the world in general, it could not be a guideline principle. The sea, as an energy source, has the characteristic of offering different types of exploitation, in this project the focus is on the wave energy. Over the last 15 years the Countries interested in the renewable energies grew. Therefore many devices have came out, first in the world of research, then in the commercial one; these converters are able to achieve an energy transformation into electrical energy. The purpose of this work is to analyze the efficiency of a new wave energy converter, called WavePiston, with the aim of determine the feasibility of its actual application in different wave conditions: from the energy sea state of the North Sea, to the more quiet of the Mediterranean Sea. The evaluation of the WavePiston is based on the experimental investigation conducted at the University of Aalborg, in Denmark; and on a numerical modelling of the device in question, to ascertain its efficiency regardless the laboratory results. The numerical model is able to predict the laboratory condition, but it is not yet a model which can be used for any installation, in fact no mooring or economical aspect are included yet. È dai primi anni del 1970 che si è iniziato a capire che il solo principio dell’industria con l’incuranza delle condizioni salutari delle persone e del mondo in generale non poteva essere un principio guida. Il mare, come fonte energetica, ha la caratteristica di offrire diverse tipologie di sfruttamento, in questo progetto è stata analizzata l’energia da onda. Negli ultimi 15 anni sono stati sempre più in aumento i Paesi interessati in questo ambito e di conseguenza, si sono affacciati, prima nel mondo della ricerca, poi in quello commerciale, sempre più dispositivi atti a realizzare questa trasformazione energetica. Di tali convertitori di energia ondosa ne esistono diverse classificazioni. Scopo di tale lavoro è analizzare l’efficienza di un nuovo convertitore di energia ondosa, chiamato WavePiston, al fine si stabilire la fattibilità di una sua reale applicazione in diverse condizioni ondose: dalle più energetiche del Mare del Nord, alle più quiete del Mar Mediterraneo. La valutazione sul WavePiston è basata sullo studio sperimentale condotto nell’Università di Aalborg, in Danimarca; e su di una modellazione numerica del dispositivo stesso, al fine di conoscerne l’efficienza a prescindere dalla possibilità di avere risultati di laboratorio. Il modello numerico è in grado di predirre le condizioni di laboratorio, ma non considera ancora elementi come gli ancoraggi o valutazione dei costi.

From the traditional verification approach to the spatial methods: a study of applicability of the SAL metric in the framework of the WMO project MesoVICT

Increasing in resolution of numerical weather prediction models has allowed more and more realistic forecasts of atmospheric parameters. Due to the growing variability into predicted fields the traditional verification methods are not always able to describe the model ability because they are based on a grid-point-by-grid-point matching between observation and prediction. Recently, new spatial verification methods have been developed with the aim of show the benefit associated to the high resolution forecast. Nested in among of the MesoVICT international project, the initially aim of this work is to compare the newly tecniques remarking advantages and disadvantages. First of all, the MesoVICT basic examples, represented by synthetic precipitation fields, have been examined. Giving an error evaluation in terms of structure, amplitude and localization of the precipitation fields, the SAL method has been studied more thoroughly respect to the others approaches with its implementation in the core cases of the project. The verification procedure has concerned precipitation fields over central Europe: comparisons between the forecasts performed by the 00z COSMO-2 model and the VERA (Vienna Enhanced Resolution Analysis) have been done. The study of these cases has shown some weaknesses of the methodology examined; in particular has been highlighted the presence of a correlation between the optimal domain size and the extention of the precipitation systems. In order to increase ability of SAL, a subdivision of the original domain in three subdomains has been done and the method has been applied again. Some limits have been found in cases in which at least one of the two domains does not show precipitation. The overall results for the subdomains have been summarized on scatter plots. With the aim to identify systematic errors of the model the variability of the three parameters has been studied for each subdomain.