Molluscs of the marine protected area "Secche di Tor Paterno"

The thesis describes the molluscan biodiversity of the infralittoral off-shore reefs in the "Secche di Tor Paterno" marine protected area lying in the Central Tyrrhenian Sea off the coasts of Lazio south of Roma. Data originate from underwater sampling activities carried out by SCUBA diving in four biocoenoses: Posidonia oceanica leaves and rhizomes, coralligenous concretions and detritic pools. The representativeness of molluscs as descriptors of biocoenoses is evaluated by preliminary comparisons with data about Polychaeta, Pleocyemata (Crustacea) and Brachiopoda obtained in the same survey. The malacocoenoses of the four biocoenoses are treated in detail. Then data are compared with other data sets to assess differences and similarities with other communities. The agreement between death and living assemblages in the reefs is evaluated for the Posidonia oceanica and the coralligenous biocoenosis and was carried out by a set of standard metrics and some benthic ecology methods. Molluscs perform very well as descriptors of biocoenoses, better than the other phyla. The molluscan assemblages of the reefs are very rich in species despite richness is mainly concentrated in the coralligenous and in the rhizomes of Posidonia oceanica. The leaves of Posidonia oceanica host a rather poor assemblage. Detritic pools host a poor but peculiar species assemblage. The dead-live agreement showed that death assemblages are highly representative of sediments of nearby biocoenoses as a result of low bottom transport. Fidelity metrics suggest a good agreement between the living and death assemblages when species richness and taxonomic composition are considered. The study suggests that fidelity is lower when considering the species dominance. These differences could be associated to the trophism of species and possibly to the species life span.

NOVI MAGISTRAT Jože Plečnik, progetti per il centro monumentale di Lubiana

This research work analyzes the theme of the architecture of the city and aims at establishing, by studying the urban project of the new town hall in Ljubljana made by the Slovenian architect Jože Plečnik, the idea that the construction of the city must be carried out through a type of architecture directed at the planning of collective urban spaces. The plan for the new town hall building, drew in three versions – 1932, 1939, and 1940-41 –, is part of a large set of plans concerning the area that Plečnik defines to be the “osrčje” (heart) of Ljubljana, that is, the central area within the castle hill and the distinctive arc of the Ljubljanica River, on the eastern boundary of the old “mesto” (town). Among the Plečnik's projects on urban scale for Ljubljana, the above-mentioned plans, unbuilt and scarcely published, must be considered to be ones of the least known, despite their importance in the professional activity of the architect. The work consists of three parts: the first part describes the background of theories and projects which shaped Plečnik's urban culture, during the years of his education in Vienna and before the beginning of the planning activities this work focuses on; the second part studies the plans for the “heart” of the city; the third part investigates the plan for the new town hall building by means of the graphical reconstruction of the three plan versions made by Plečnik, and it provides insights into the relationships among form, significance and motivation of his work. Since the plans have never been built, the digital tridimensional reconstruction of the building models allowed to show unknown spaces and confirm that Architecture has a particular significance when its goal is the planning of collective urban spaces.

Che cosa significa emancipazione? Organizzazione sociale, norme giuridiche e potere paterno dalla Rivoluzione francese agli anni Quaranta dell'Ottocento

La tesi presenta un’analisi storico-concettuale del concetto di emancipazione in Francia tra la Rivoluzione francese e gli anni Quaranta dell’Ottocento a partire dalla centralità delle donne nel processo rivoluzionario e dal problema del potere paterno e dell’ordine della famiglia. Da questa prospettiva viene ricostruito il momento di affermazione del significato moderno del concetto: prima con l’Illuminismo e poi con la Rivoluzione francese si determina un progressivo allargamento semantico che farà posto a significati politico-sociali inediti e a una serie di soggetti imprevisti. La Rivoluzione presenta infatti sulla scena un soggetto collettivo, già maturo, che dà forma all’emancipazione rivoluzionaria. Quest’ultima richiede una specifica scienza in grado di arginare i suoi effetti politici più pericolosi senza tradirne le premesse formali. A questo risponde l’Idéologie come scienza sociale sul finire della Rivoluzione. Se le donne in questi anni si mobilitano a partire dall’emancipazione rivoluzionaria, esse rappresentano al tempo stesso un problema fondamentale per l’ordine rivoluzionario come mostra il dibattito sul potere paterno che fa luce sul passaggio, fondamentale per il concetto di emancipazione, dal potere di emancipare del padre a quello dello Stato emancipatore. Gli esiti di questo dibattito si trovano nel Codice civile e nella sua emancipazione codificata, che definisce i confini giuridici e formali dell’emancipazione rivoluzionaria e le sue gerarchie. In seguito, la tesi ricostruisce le trasformazioni del concetto all’indomani della Rivoluzione nella dottrina di Saint-Simon e dei suoi allievi. Questa sarà all’origine del discorso che si sviluppa in Francia tra gli anni Trenta e Quaranta sul problema dell’emancipazione della donna che trova espressione negli scritti delle donne saint-simoniane. La tesi si ferma alle porte degli anni Quaranta quando l’emancipazione nel suo significato moderno si stabilizza e diventa un vero e proprio concetto di movimento, espressione di processi di emancipazione che si erano preparati negli anni precedenti.

Analyzing the dependence structure of microarray data: a copula–based approach

The main aim of this Ph.D. dissertation is the study of clustering dependent data by means of copula functions with particular emphasis on microarray data. Copula functions are a popular multivariate modeling tool in each field where the multivariate dependence is of great interest and their use in clustering has not been still investigated. The first part of this work contains the review of the literature of clustering methods, copula functions and microarray experiments. The attention focuses on the K–means (Hartigan, 1975; Hartigan and Wong, 1979), the hierarchical (Everitt, 1974) and the model–based (Fraley and Raftery, 1998, 1999, 2000, 2007) clustering techniques because their performance is compared. Then, the probabilistic interpretation of the Sklar’s theorem (Sklar’s, 1959), the estimation methods for copulas like the Inference for Margins (Joe and Xu, 1996) and the Archimedean and Elliptical copula families are presented. In the end, applications of clustering methods and copulas to the genetic and microarray experiments are highlighted. The second part contains the original contribution proposed. A simulation study is performed in order to evaluate the performance of the K–means and the hierarchical bottom–up clustering methods in identifying clusters according to the dependence structure of the data generating process. Different simulations are performed by varying different conditions (e.g., the kind of margins (distinct, overlapping and nested) and the value of the dependence parameter ) and the results are evaluated by means of different measures of performance. In light of the simulation results and of the limits of the two investigated clustering methods, a new clustering algorithm based on copula functions (‘CoClust’ in brief) is proposed. The basic idea, the iterative procedure of the CoClust and the description of the written R functions with their output are given. The CoClust algorithm is tested on simulated data (by varying the number of clusters, the copula models, the dependence parameter value and the degree of overlap of margins) and is compared with the performance of model–based clustering by using different measures of performance, like the percentage of well–identified number of clusters and the not rejection percentage of H0 on . It is shown that the CoClust algorithm allows to overcome all observed limits of the other investigated clustering techniques and is able to identify clusters according to the dependence structure of the data independently of the degree of overlap of margins and the strength of the dependence. The CoClust uses a criterion based on the maximized log–likelihood function of the copula and can virtually account for any possible dependence relationship between observations. Many peculiar characteristics are shown for the CoClust, e.g. its capability of identifying the true number of clusters and the fact that it does not require a starting classification. Finally, the CoClust algorithm is applied to the real microarray data of Hedenfalk et al. (2001) both to the gene expressions observed in three different cancer samples and to the columns (tumor samples) of the whole data matrix.

Mediterranean brachiopods: morphological, ecological and phylogenetic aspects

The Brachiopoda of the Marine Protected Area “Secche di Tor Paterno”, Central Tyrrhenian Sea, have been investigated in order to give a first glance of the diversity of the brachiopods of this area and provide a new report on the Mediterranean Brachiopod fauna. Four species were reported: Novocrania anomala (Müller, 1776), Megathiris detruncata (Gmelin, 1790), Joania cordata (Risso,1826) and Argyrotheca cuneata (Risso,1826). For all the four species a morphological analysis was carried out. For the two most abundant species, J.cordata and A. cuneata, a morphometric study, based on thickness/width and length/width scattergrams, was carried out, in order to investigate their variability. Size-frequency distributions relative to the three dimensions of the shell were also computed, aimed at a evaluation of population dynamics of these two species. The results showed that, for both species, the parameters which most determine the rise of the shell during the growth of animal are width and length and that frequency distributions are mainly bi- or plurymodal and that they are difficult to interpret, as reported by other studies. Analysis of drill holes found on the shell of some specimens of the two same species revealed a predatory origin and that three different predators are responsible for them. Partial sequences of two different genetic markers, the Internal Transcribed Spacer 1 (ITS1) and the cytochrome oxidase subunit 1 (COI), were used to investigate the phylogenetic relationship between two populations of the eurybathic brachiopod species Gryphus vitreus (Born,1778) across the strait of Gibraltar. This represents the first genetic population study on brachiopods. Results from AMOVA and Bayesian analysis performed on 31 specimens highlighted no genetic differentiation indicating a likely panmixia, dispite the lecitotrophic development of the species.