Diversity and three-dimensional structures of the alpha Mcr of the methanogenic Archaea from the anoxic region of Tucuruí Lake, in Eastern Brazilian Amazonia

ABSTRACT: Methanogenic archaeans are organisms of considerable ecological and biotechnological interest that produce methane through a restricted metabolic pathway, which culminates in the reaction catalyzed by the Methyl-coenzyme M reductase (Mcr) enzyme, and results in the release of methane. Using a metagenomic approach, the gene of the a subunit of mcr (mcrα) was isolated from sediment sample from an anoxic zone, rich in decomposing organic material, obtained from the Tucuruí hydroelectric dam reservoir in eastern Brazilian Amazonia. The partial nucleotide sequences obtained were 83 to 95% similar to those available in databases, indicating a low diversity of archaeans in the reservoir. Two orders were identified -the Methanomicrobiales, and a unique Operational Taxonomic Unit (OTU) forming a clade with the Methanosarcinales according to low bootstrap values. Homology modeling was used to determine the three-dimensional (3D) structures, for this the partial nucleotide sequence of the mcrα were isolated and translated on their partial amino acid sequences. The 3D structures of the archaean mcrα observed in the present study varied little, and presented approximately 70% identity in comparison with the mcrα of Methanopyrus klanderi. The results demonstrated that the community of methanogenic archaeans of the anoxic C1 region of the Tucurui reservoir is relatively homogeneous.

Facies analysis of the Codó formation (Late Aptian) in the Grajaú area, Southern São Luís-Grajaú Basin

Facies descriptions of the Codó Formation in the Grajaú area are provided for the first time, and its sedimentary characteristics compared to those from the Codó area to allow paleoenvironmental reconstructions. Deposits in the Grajaú area include evaporites, limestones and argillites bearing features indicative of a shallow, low energy, subaqueous, saline environment exposed to meteoric and/or capillary conditions. Floodingevaporative concentration-desiccation cycles suggest a saline pan complex surrounded by extensive evaporitic mudflats. The location of the system, whether coastal or inland, is a matter open for debate. However, the later hypothesis is favored considering: 1. Sr isotopic data, with values higher than those expected for Late Aptian marine waters; 2. calcitic composition of limestones (instead of dolomitic and/or magnesitic as expected in coastal settings); and 3. presence of continental ostracods and lack of marine fauna. This interpretation is consistent with that proposed for UpperAptian deposits of the Codó area, but the depositional system there was one dominated by more stable, well-stratified, anoxic waters and evaporite precipitation in central lacustrine areas, while in the Grajaú area the salt pan was more oxygenated and ephemeral, with salt precipitation mainly in marginal areas or along surrounding mudflats.