Abordagem probabilística para caracterização do sistema de marcação de sequenciamento multiplex na plataforma ABI SOLID

Os sequenciadores de nova geração como as plataformas Illumina e SOLiD geram uma grande quantidade de dados, comumente, acima de 10 Gigabytes de arquivos-texto. Particularmente, a plataforma SOLiD permite o sequenciamento de múltiplas amostras em uma única corrida (denominada de corrida multiplex) por meio de um sistema de marcação chamado Barcode. Esta funcionalidade requer um processo computacional para separação dos dados por amostra, pois, o sequenciador fornece a mistura de todas amostras em uma única saída. Este processo deve ser seguro a fim de evitar eventuais embaralhamentos que possam prejudicar as análises posteriores. Neste contexto, o presente trabalho propõe desenvolvimento de um modelo probabilístico capaz de caracterizar sistema de marcação utilizado em sequenciamentos multiplex. Os resultados obtidos corroboraram a suficiência do modelo obtido, o qual permite, dentre outras coisas, identificar faltas em algum passo do processo de sequenciamento; adaptar e desenvolver de novos protocolos para preparação de amostras, além de atribuir um Grau de Confiança aos dados gerados e guiar um processo de filtragem que respeite as características de cada sequenciamento, não descartando sequências úteis de forma arbitrária.

A mass transfer model applied to the supercritical extraction with CO2 of curcumins from turmeric rhizomes (Curcuma longa L)

ABSTRACT: Increasing restrictions on the use of artificial pigments in the food industry, imposed by the international market, have increased the importance of raw materials containing natural pigments. Of those natural substances with potential applications turmeric rhizomes (Curcuma longa L), are one of the most important natural sources of yellow coloring. Three different pigments (curcumin, desmetoxycurcumin, and bis-desmetoxycurcumin) constitute the curcuminoids. These pigments are largely used in the food industry as substitutes for synthetic dyes like tartrazin. Extraction of curcuminoids from tumeric rhizomes with supercritical CO2 can be applied as an alternative method to obtain curcuminoids, as natural pigments are in general unstable, and hence degrade when submitted to extraction with organic solvents at high temperatures. Extraction experiments were carried out in a supercritical extraction pilot plant at pressures between 25 and 30 MPa and a temperature of 318 K. The influence of drying pretreatment on extraction yield was evaluated by analyzing the mass transfer kinetics and the content of curcuminoids in the extracts during the course of extraction. The chemical identification of curcuminoids in both the extract and the residual solid was performed by spectrophotometry. Mass transfer within the solid matrix was described by a linear first-order desorption model, while that in the gas phase was described by a convective mass transfer model. Experimental results showed that the concentration profile for curcuminoids during the supercritical extraction process was higher when the turmeric rhizomes were submitted to a drying pretreatment at 343 K.