Desenvolvimento de um algoritmo computacional MoM 3D aplicado em nanoplasmônica

Este trabalho apresenta o desenvolvimento de um algoritmo computacional para análise do espalhamento eletromagnético de nanoestruturas plasmônicas isoladas. O Método dos Momentos tridimensional (MoM-3D) foi utilizado para resolver numericamente a equação integral do campo elétrico, e o modelo de Lorentz-Drude foi usado para representar a permissividade complexa das nanoestruturas metálicas. Baseado nesta modelagem matemática, um algoritmo computacional escrito em linguagem C foi desenvolvido. Como exemplo de aplicação e validação do código, dois problemas clássicos de espalhamento eletromagnético de nanopartículas metálicas foram analisados: nanoesfera e nanobarra, onde foram calculadas a resposta espectral e a distribuição do campo próximo. Os resultados obtidos foram comparados com resultados calculados por outros modelos e observou-se uma boa concordância e convergência entre eles.

Sciaenidae fish of the Caeté River estuary, Northern Brazil: mitochondrial DNA suggests explosive radiation for the Western Atlantic assemblage

Sciaenids are fish which are normally abundant in tropical estuaries of the western Atlantic. Studies on the Caeté river estuary in the northern Brazilian state of Pará have revealed that in this area Sciaenidae is the dominant family, comprising almost 50% of all teleosts sampled. In this paper we present the results of the first phylogenetic study on South American estuarine sciaenids, during which we obtained mitochondrial gene 16S sequences from 15 species belonging to eight genera occurring in the Caeté estuary. Intergeneric nucleotide divergences varied from 5 to 15%, Lonchurus and Menticirrhus being the most divergent lineages. Nucleotide divergences were quite variable amongst species of the same genus, ranging from 1.2% (Stellifer microps x Stellifer naso) to 8.4% (Menticirrhus americanus x Menticirrhus littoralis). Cladograms based on maximum parsimony, minimum evolution and maximum likelihood depicted an explosive diversification pattern for the western Atlantic sciaenid assemblage. Our analysis further reveals a very close relationship between Bairdiella and Stellifer, a monophyletic clade which emerged during the more recent diversification events of the Sciaenidae family. The phylogenetic reconstruction suggests the need for a revision of the taxonomy and nomenclature of the Bairdiella/Stellifer group.

Comparative analysis of circular and triangular gold nanodisks for field enhancement applications

ABSTRACT: In this paper, we present a quantitative comparison of circular and triangular gold nanodisks with the same length and thickness. The method of moments is used to solve numerically the scattering problem. With this model, we investigate the spatial near field distribution, spectral response, far field diagrams, and bandwidth wavelength of these particles. Our results show that the resonant wavelength and the near field enhancement and confinement of the triangular particle are larger than those for the circular particle, but the resonance bandwidth and scattering cross section of the triangular particle are smaller.

A test of the utility of DNA barcoding in the radiation of the freshwater stingray genus Potamotrygon (Potamotrygonidae, Myliobatiformes)

DNA barcoding is a recently proposed global standard in taxonomy based on DNA sequences. The two main goals of DNA barcoding methodology are assignment of specimens to a species and discovery of new species. There are two main underlying assumptions: i) reciprocal monophyly of species, and ii) intraspecific divergence is always less than interspecific divergence. Here we present a phylogenetic analysis of the family Potamotrygonidae based on mitochondrial cytochrome c oxidase I gene, sampling 10 out of the 18 to 20 valid species including two non-described species. Potamotrygonidae systematics is still not fully resolved with several still-to-be-described species while some other species are difficult to delimit due to overlap in morphological characters and because of sharing a complex color patterns. Our results suggest that the family passed through a process of rapid speciation and that the species Potamotrygon motoro, P. scobina, and P. orbignyi share haplotypes extensively. Our results suggest that systems of identification of specimens based on DNA sequences, together with morphological and/or ecological characters, can aid taxonomic studies, but delimitation of new species based on threshold values of genetic distances are overly simplistic and misleading.