Validade das informações ocupação e causa básica em declarações de óbito de Botucatu, São Paulo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Validade de histórias ocupacionais de informantes secundários

OBJETIVO: Embora sejam freqüentes os estudos epidemiológicos trazendo informações ocupacionais obtidas em entrevistas com familiares de trabalhadores, há poucos trabalhos analisando a validade dessas informações, sendo nenhum deles realizados em países em desenvolvimento. Objetivou-se estudar a validade do uso de informações ocupacionais obtidas de informantes secundários em estudos epidemiológicos, pela análise de concordância entre histórias ocupacionais obtidas em entrevistas independentes com os próprios trabalhadores e seus familiares. MÉTODOS: A história ocupacional de trabalhadores, residentes no Município de Botucatu, SP, em 1998, foi obtida por entrevistas com os próprios trabalhadores e com os familiares próximos. Calcularam-se a sensibilidade e a especificidade das informações ocupacionais dos familiares, considerando-se padrão-ouro a informação do trabalhador. Avaliou-se a concordância dos pares de informação pelo coeficiente Kappa. RESULTADOS: Foram entrevistados 2.163 pares trabalhador/familiar. A sensibilidade da informação ocupacional dos familiares variou entre 77,5% (IC95%; 64,6% -- 90,4%) e 98,9% (97,3% -- 100,0%), enquanto a especificidade variou entre 96,9% (96,0% -- 97,7%) e 99,9% (99,7% -- 100,0%). O coeficiente Kappa para a concordância da informação ocupação principal, segundo as duas fontes, foi de 0,86 (0,85 -- 0,88). CONCLUSÕES: A utilização de informações ocupacionais obtidas de informantes secundários, se tratadas como variáveis categóricas, tem validade. Utilizando-se informações relativas a tempos acumulados de trabalho, concluiu-se que informantes secundários subestimam os tempos de exposição quando comparados com os próprios trabalhadores.

Resonant production of scalar diquarks at the next generation electron-positron colliders

We investigate the potential of TESLA and JLC/NLC electron-positron linear collider designs to observe diquarks produced resonantly in processes involving hard photons.

Subtractive renormalization of the next-to-leading order NN interaction

The subtracted kernel method is implemented recursively to solve scattering equations for the S-1(0) phase-shifts considering the leading and the next-to-leading order NN interaction.

Copy number variation of individual cattle genomes using next-generation sequencing

Copy number variations (CNVs) affect a wide range of phenotypic traits; however, CNVs in or near segmental duplication regions are often intractable. Using a read depth approach based on next-generation sequencing, we examined genome-wide copy number differences among five taurine (three Angus, one Holstein, and one Hereford) and one indicine (Nelore) cattle. Within mapped chromosomal sequence, we identified 1265 CNV regions comprising similar to 55.6-Mbp sequence-476 of which (similar to 38%) have not previously been reported. We validated this sequence-based CNV call set with array comparative genomic hybridization (aCGH), quantitative PCR (qPCR), and fluorescent in situ hybridization (FISH), achieving a validation rate of 82% and a false positive rate of 8%. We further estimated absolute copy numbers for genomic segments and annotated genes in each individual. Surveys of the top 25 most variable genes revealed that the Nelore individual had the lowest copy numbers in 13 cases (similar to 52%, chi(2) test; P-value <0.05). In contrast, genes related to pathogen- and parasite-resistance, such as CATHL4 and ULBP17, were highly duplicated in the Nelore individual relative to the taurine cattle, while genes involved in lipid transport and metabolism, including APOL3 and FABP2, were highly duplicated in the beef breeds. These CNV regions also harbor genes like BPIFA2A (BSP30A) and WC1, suggesting that some CNVs may be associated with breed-specific differences in adaptation, health, and production traits. By providing the first individualized cattle CNV and segmental duplication maps and genome-wide gene copy number estimates, we enable future CNV studies into highly duplicated regions in the cattle genome.

Discriminating new physics scenarios at the Next Linear Collider: The role of polarization

We explore the potential of the Next Linear Collider, operating in the e γ mode, to disentangle new physics scenarios in single W production. We study the effects related to the exchange of composite fermions in the reaction e γ→Wνe, and compare them with those arising from trilinear gauge boson anomalous couplings. We stress the role played by the initial state polarization to increase the reach of this machine and to discriminate the possible origin of the new phenomena.

Tests of anomalous quartic couplings at the Next Linear Collider

We analyze the potential of the Next Linear e+e- Collider to study anomalous quartic vector-boson interactions through the processes e+e-→W+W-Z and ZZZ. In the framework of SU(2)L⊗U(1)Y chiral Lagrangians, we examine all effective operators of order p4 that lead to four-gauge-boson interactions but do not induce anomalous trilinear vertices. In our analysis, we take into account the decay of the vector bosons to fermions and evaluate the efficiency in their reconstruction. We obtain the bounds that can be placed on the anomalous quartic interactions and we study the strategies to distinguish the possible couplings.

Isolation and characterization of microsatellites markers for two South American frogs (Leptodactylus bufonius and L. chaquensis) using next generation sequencing

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Next-generation sequencing reveals large connected networks of intra-host HCV variants

Background: Next-generation sequencing (NGS) allows for sampling numerous viral variants from infected patients. This provides a novel opportunity to represent and study the mutational landscape of Hepatitis C Virus (HCV) within a single host.Results: Intra-host variants of the HCV E1/E2 region were extensively sampled from 58 chronically infected patients. After NGS error correction, the average number of reads and variants obtained from each sample were 3202 and 464, respectively. The distance between each pair of variants was calculated and networks were created for each patient, where each node is a variant and two nodes are connected by a link if the nucleotide distance between them is 1. The work focused on large components having > 5% of all reads, which in average account for 93.7% of all reads found in a patient. The distance between any two variants calculated over the component correlated strongly with nucleotide distances (r = 0.9499; p = 0.0001), a better correlation than the one obtained with Neighbour-Joining trees (r = 0.7624; p = 0.0001). In each patient, components were well separated, with the average distance between (6.53%) being 10 times greater than within each component (0.68%). The ratio of nonsynonymous to synonymous changes was calculated and some patients (6.9%) showed a mixture of networks under strong negative and positive selection. All components were robust to in silico stochastic sampling; even after randomly removing 85% of all reads, the largest connected component in the new subsample still involved 82.4% of remaining nodes. In vitro sampling showed that 93.02% of components present in the original sample were also found in experimental replicas, with 81.6% of reads found in both. When syringe-sharing transmission events were simulated, 91.2% of all simulated transmission events seeded all components present in the source.Conclusions: Most intra-host variants are organized into distinct single-mutation components that are: well separated from each other, represent genetic distances between viral variants, robust to sampling, reproducible and likely seeded during transmission events. Facilitated by NGS, large components offer a novel evolutionary framework for genetic analysis of intra-host viral populations and understanding transmission, immune escape and drug resistance.