TRICUT: a program to clip triangle meshes using the rapid and triangle libraries and the visualization toolkit

An efficient technique to cut polygonal meshes as a step in the geometric modeling of topographic and geological data has been developed. In boundary represented models of outcropping strata and faulted horizons polygonal meshes often intersect each other. TRICUT determines the line of intersection and re-triangulates the area of contact. Along this line the mesh is split in two or more parts which can be selected for removal. The user interaction takes place in the 3D-model space. The intersection, selection and removal are under graphic control. The visualization of outcropping geological structures in digital terrain models is improved by determining intersections against a slightly shifted terrain model. Thus, the outcrop line becomes a surface which overlaps the terrain in its initial position. The area of this overlapping surface changes with respect to the strike and dip of the structure, the morphology and the offset. Some applications of TRICUT on different real datasets are shown. TRICUT is implemented in C+ + using the Visualization Toolkit in conjunction with the RAPID and TRIANGLE libraries. The program runs under LINUX and UNIX using the MESA OpenGL library. This work gives an example of solving a complex 3D geometric problem by integrating available robust public domain software. (C) 2002 Elsevier B.V. Ltd. All rights reserved.

Free tools and strategies for the generation of 3D finite element meshes: Modeling of the cardiac structures

The Finite Element Method is a well-known technique, being extensively applied in different areas. Studies using the Finite Element Method (FEM) are targeted to improve cardiac ablation procedures. For such simulations, the finite element meshes should consider the size and histological features of the target structures. However, it is possible to verify that some methods or tools used to generate meshes of human body structures are still limited, due to nondetailed models, nontrivial preprocessing, or mainly limitation in the use condition. In this paper, alternatives are demonstrated to solid modeling and automatic generation of highly refined tetrahedral meshes, with quality compatible with other studies focused on mesh generation. The innovations presented here are strategies to integrate Open Source Software (OSS). The chosen techniques and strategies are presented and discussed, considering cardiac structures as a first application context. © 2013 E. Pavarino et al.

Classificação fuzzy de vertentes por krigagem e TPS com agregação de regiões via diagrama de Voronoi

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

A coupling technique for non-matching finite element meshes

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Graded meshes in bio-thermal problems with transmission-line modeling method

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Germinação de sementes de Caesalpinia leiostachya (benth.) ducke (pau-ferro) classificadas pelo tamanho e pela forma

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Erosion factors and magnetic susceptibility in differet compartments of a slope in Gilbués-PI, Brazil

A erosão é a forma de degradação do solo com efeitos na produtividade das culturas e na poluição do meio ambiente. Para compreender a variabilidade espacial desse fenômeno, técnicas geoestatísticas e conceitos da relação solo-paisagem podem ser utilizados para identificar compartimentos da paisagem com diferentes potenciais de erosão. O objetivo deste trabalho foi estabelecer elementos para a compreensão dos fatores de erosão em compartimentos da paisagem e das relações com a suscetibilidade magnética (SM) dos solos de uma vertente no município de Gilbués -PI. Foram montadas malhas de amostragem nos compartimentos I e II, com 121 pontos, e compartimento III, com 99 pontos, espaçados a cada 10 m. Houve diferença significativa para erodibilidade (K) e risco de erosão (RE); a variabilidade espacial da SM foi menor do que a dos fatores de erosão do solo. As perdas de solo (A), potencial natural de erosão (PNE), RE e SM tiveram relação espacial com o fator topográfico, indicando dependência da erosão ao relevo. Concluiu-se que as perdas de solo, o potencial natural de erosão e o risco de erosão apresentaram relação espacial com o fator topográfico, comprovando a dependência dos fatores de erosão ao relevo. A suscetibilidade magnética do solo pode ser utilizada como variável auxiliar na quantificação indireta do fator erodibilidade e do risco de erosão do solo.

Estimativas de parâmetros genéticos e fenotípicos de características do pelame e de desempenho reprodutivo de vacas holandesas em clima tropical

Objetivou-se investigar os efeitos das características do pelame sobre a idade ao primeiro parto (IPP) e o intervalo de partos (IEP) de vacas holandesas manejadas em sistema de estabulação livre com ventiladores e aspersores e estimar os parâmetros genéticos destas características. Os dados foram analisados pelo método dos quadrados mínimos, considerando os efeitos: ano; estação; número de inseminações; origem do pai; pai dentro da origem; idade (somente para IEP); porcentagem de malhas negras; espessura do pelame; comprimento dos pêlos; número de pêlos por unidade de área da epiderme; diâmetro dos pêlos; transmitância e refletância efetiva do pelame. O método da Máxima Verossimilhança Restrita foi utilizado para estimar os componentes de (co)variância sob um modelo animal. Os resultados incluíram as estimativas de herdabilidade para IPP (0,23±0,08), IEP (0,19±0,10), malhas negras (0,75±0,08), número (0,05±0,04), espessura (0,04±0,05), comprimento (0,36±0,09) e diâmetro (0,63±0,08) de pêlos. As estimativas de correlação genética entre IPP (-0,37±0,17), IEP (0,49±0,27) e diâmetro apresentaram valores significativos e favoráveis. Entretanto, as correlações genéticas entre espessura (-0,56±0,46), número (-0,66±0,43), porcentagem de malhas negras (0,04±0,16) e IPP foram desfavoráveis para seleção conjunta para melhor adaptação e precocidade sexual. O alto valor estimado para herdabilidade e as correlações genéticas favoráveis entre diâmetro e IPP e IEP indicaram ser possível selecionar para melhorar conjuntamente a adaptação e o desempenho reprodutivo.

Procedimento para condução do teste de envelhecimento acelerado em sementes de algodão

The evaluation of the effect of seed has been fundamental tool in the program of quality control, and the accelerated aging test, an important part of that process. Some authors report that the germination and vigor are associated with seed size and facing the lack of consensus for the use of this test methodology and the relationship of seed size on the physiological quality, this work aimed to adapt the existing methodology as the temperature and period of conditioning on the performance of two sizes of seed cotton. The seeds were classified into two meshes of sieves, and then subjected to tests of water content, germination and electrical conductivity. The experimental design was completely randomized, analyzed statistically in a factorial threefold. Seeds of different sizes, showed no difference in percentage of germination. Seeds subjected to 40 degrees C for 42h of conditioning showed better percentage of germination.

Modeling a system of phosphated cross-linked high amylose for controlled drug release. Part 2: Physical parameters, cross-linking degrees and drug delivery relationships

High amylose cross-linked to different degrees with sodium trimetaphosphate by varying base strength (2% or 4%) and contact time (0.5-4 h) was evaluated as non-compacted systems for sodium diclophenac controlled release. The physical properties and the performance of these products for sodium diclophenac controlled release from non-compacted systems were related to the structures generated at each cross-linking degree. For samples at 2% until 2 h the swelling ability, G' and eta* values increased with the cross-linking degree, because the longer polymer chains became progressively more entangled and linked. This increases water uptake and holding, favoring the swelling and resulting in systems with higher viscosities. Additionally, the increase of cross-linking degree should contribute for a more elastic structure. The shorter chains with more inter-linkages formed at higher cross-linking degrees (2%4h and 4%) make water caption and holding difficult, decreasing the swelling, viscosity and elasticity. For 2% samples, the longer drug release time exhibited for 2%4h sample indicates that the increase of swelling and viscosity contribute for a more sustained drug release, but the mesh size of the polymeric network seems to be determinant for the attachment of drug molecules. For the 4% samples, smaller meshes size should determine less sustained release of drug. (C) 2008 Elsevier B.V. All rights reserved.

Adaptation of the reservoir fish assemblage index (RFAI) for assessing the Barra Bonita Reservoir (São Paulo, Brazil)

In order to evaluate the environmental condition of the Barra Bonita Reservoir, we adapted the Index of Biotic Integrity (IBI). We chose 24 sampling sites in which three types of habitats were sampled: the mouths of tributaries, the central reservoir and the lateral reservoir. Fish were caught in two seasons (dry and rainy) using 10 gillnet gangs, with meshes ranging from 3 to 12 cm between opposite knots, and funnel traps. Abiotic and biotic variables were measured. Due to the artificial nature of the reservoir, the term biotic integrity was considered inappropriate and the term RFAI (Reservoir Fish Assemblage Index) was adopted. Twelve metrics from sixteen possibles were selected using the Pearson correlation coefficient. The reference conditions were set up based on the criteria of the best condition observed. For each metric, a score of 1, 3 or 5 was assigned as it strongly departs (1), slightly departs (3) or approaches (5) the reference condition. The index value is the sum of the metrics partial scores and ranges from 12 to 60. To evaluate the importance of the unit of measurement of the metric, the index was calculated in fish number (RFAI(N)) and in weight (RFAI(w)). The correlation between RFAIN and RFAIw was very high (r = 0.90, n = 46) indicating that the unit of measurement does not influence the final result of the index. Most of the sampling sites were classified in the 'reasonable' RFAI category. Only the central sites were classified as 'poor'. To validate the RFAI, another index, the Habitat Quality Index (HQI), was built starting from the physiochemical and habitat variables collected. The correlation of the RFAI with the HQI was highly significant (RFAIN, r = 0.37; RFAI(w), r = 0.47; n = 46), indicating that they respond in the same way to environmental degradation. The HQI metrics which most affect RFAI were depth, surrounding landscape and macrophyte presence/absence. Copyright C) 2007 John Wiley & Sons, Ltd.

Biologia populacional de Cyphocarax modestus (Osteichthyes, Curimatidae) no córrego Ribeirão Claro, município de Rio Claro (SP)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Biologia populacional de Cyphocarax modestus no córrego Ribeirão Claro, município de Rio Claro (SP)

This work aimed a better understanding of the annual cycle of Cyphocarax modestus in the reservoir of water captation of Ribeirao Claro stream. The growth parameters were estimated through the analysis of length distribution and the relationships among time of smaller growth, alimentary activity, fat accumulation and reproductive period were considered. Besides, the instantaneous rate of natural mortality was calculated. Monthly samplings were accomplished in the Ribeirao Claro stream, in the reservoir of water captation of Rio Claro city. For that, 50 m of wait net was used, with meshes of 1.5, 2.0, 2.5, 3.0 and 3.5 cm measured between adjacent knots. The ELEFAN I program was used to estimate the growth parameters, and its application was done using the FISAT program. It was also used the seasonal version of von Bertalanffy's growth curve. It was considered that the reproduction of C. modestus is annual and concentrated from December to February, allowing the identification of different modas in the distributions, an essential condition for the conduction of that analysis type. The estimated parameters were: K = 0.34/year, L [infinity] = 15.40 cm, C = 0.2, Wp = 0.6 and M = 0.949/year, with the identification of four cohorts. The physiologic sequence in the annual cycle of the specie could be noted when data of accumulated fat in the visceral cavity, alimentary activity, reproduction time and time of smaller growth were analyzed together. It was noted that with the beginning of the maturation of gonads, the energy resources stopped being invested in the growth and passed to be used for reproduction.

Regge calculus in teleparallel gravity

In the context of the teleparallel equivalent of general relativity, the Weitzenbock manifold is considered as the limit of a suitable sequence of discrete lattices composed of an increasing number of smaller and smaller simplices, where the interior of each simplex (Delaunay lattice) is assumed to be flat. The link lengths l between any pair of vertices serve as independent variables, so that torsion turns out to be localized in the two-dimensional hypersurfaces (dislocation triangle, or hinge) of the lattice. Assuming that a vector undergoes a dislocation in relation to its initial position as it is parallel transported along the perimeter of the dual lattice (Voronoi polygon), we obtain the discrete analogue of the teleparallel action, as well as the corresponding simplicial vacuum field equations.

Criteria for mixed grids in computational fluid dynamics

The finite volume method is used as a numerical method for solving the fluid flow equations. This method is appropriate to employ under structured and unstructured meshes. Mixed grids, combining both types of grids, are investigated. The coupling of different grids is done by overlapping strategy. The computational effort for the mixed grid is evaluated by the CPU-time, with different percentage of covering area of the unstructured mesh. The present scheme is tested for the driven cavity problem, where the incompressible fluid is integrated by calculating the velocity fields and computing the pressure field in each time step. Several schemes for unstructured grid are examined, and the compatibility condition is applied to check their consistency. A scheme to verify the compatibility condition for the unstructured grids is presented. (c) 2006 IMACS. Published by Elsevier B.V. All rights reserved.