Analysis of Bothrops jararacussu venomous gland transcriptome focusing on structural and functional aspects: I - gene expression profile of highly expressed phospholipases A(2)

Snake venom glands are a rich source of bioactive molecules such as peptides, proteins and enzymes that show important pharmacological activity leading to in local and systemic effects as pain, edema, bleeding and muscle necrosis. Most studies on pharmacologically active peptides and proteins from snake venoms have been concerned with isolation and structure elucidation through methods of classical biochemistry. As an attempt to examine the transcripts expressed in the venom gland of Bothrops jararacussu and to unveil the toxicological and pharmacological potential of its products at the molecular level, we generated 549 expressed sequence tags (ESTs) from a directional cDNA library. Sequences obtained from single-pass sequencing of randomly selected cDNA clones could be identified by similarities searches on existing databases, resulting in 197 sequences with significant similarity to phospholipase A(2) (PLA(2)), of which 83.2% were Lys49-PLA(2) homologs (BOJU-1), 0.1% were basic Asp49-PLA(2)s (BOJU-II) and 0.6% were acidic Asp49-PLA(2)s (BOJU-III). Adjoining this very abundant class of proteins we found 88 transcripts codifying for putative sequences of metalloproteases, which after clustering and assembling resulted in three full-length sequences: BOJUMET-I, BOJUMET-II and BOJUMET-III; as well as 25 transcripts related to C-type lectin like protein including a full-length cDNA of a putative galactose binding C-type lectin and a cluster of eight serine-proteases transcripts including a full-length cDNA of a putative serine protease. Among the full-length sequenced clones we identified a nerve growth factor (Bj-NGF) with 92% identity with a human NGF (NGHUBM) and an acidic phospholipase A2 (BthA-I-PLA(2)) displaying 85-93% identity with other snake venom toxins. Genetic distance among PLA(2)s from Bothrops species were evaluated by phylogenetic analysis. Furthermore, analysis of full-length putative Lys49-PLA(2) through molecular modeling showed conserved structural domains, allowing the characterization of those proteins as group II PLA(2)s. The constructed cDNA library provides molecular clones harboring sequences that can be used to probe directly the genetic material from gland venom of other snake species. Expression of complete cDNAs or their modified derivatives will be useful for elucidation of the structure-function relationships of these toxins and peptides of biotechnological interest. (C) 2004 Elsevier SAS. All rights reserved.

Transpressional tectonics and strain partitioning during oblique collision between three plates in the Precambrian of southeast Brazil

This paper is part of the special publication Continental transpressional and transtensional tectonics (eds R.E. Holdsworth, R.A. Strachan and J.F. Dewey). Two orogenic belts have been recognized in south- east Brazil, which are interpreted to have been formed as a product of diachronous collisions between three continental plates. Wide crustal-scale shear belts have developed both between and inboard of the collided and amalgamated plate borders. These shear belts record frontal, oblique or lateral displacements during oblique plate convergence and A-type subduction. The overall structural style of each belt depends on the angle subtended between the plate boundary and the convergence vector. The E-W branch between the Sao Paulo and Brasilia plates the Campo do Meio strike-slip shear belt, has undergone dominantly sinistral wrench dominated transpression along a set of folds and shear zones dipping southwards. The NE-SW branch between the Sao Paulo and Vitoria plates, the Paraiba do Sul strike-slip shear belt, has undergone a partitioned dextral transpression, whereas the north-south branch between the Brasilia and Vitoria plates is essentially a frontal thrust system with only a weak component of dextral strike-slip. These complex structural patterns, formed at deep to mid-crustal levels, reflect temporal and spatial partitioning at all scales between flattening and non- coaxial deformation, and down-dip and strike-slip shearing, in tangential as well as in transcurrent structural domains. Additionally, this area demonstrates that regional flower structures, lateral extrusion and other secondary deformations across the yz sections of transpressional belts are important in accommodating shortening in obliquely convergent orogens.

Caracterização funcional da proteína MxA: estudo do seu envolvimento com a mauinaria de SUMOilação

Pós-graduação em Biotecnologia - IQ

Caracterização geológica e estrutural da porção centro-norte do greenstone belt de Faina, Faina-GO

The area where the study was conducted is located in the central-western state of Goias. It geologically inserts the northern portion of the Greenstone Belt of Faina which belongs to the Archean terranes that fits in Brasília Fold Belt and Tocantins Structural Province. This region is known for its greenstone lode gold potential and it was heavily exploited by pioneers and prospectors, leaving many records for where they have been through. Preliminary work done by Orinoco Brasil Mineração in their required areas at the region showed that the environment is promising for gold mineralization and that the ore is controlled by structures. Therefore the objectives of this work were the geological and structural mapping in semi detail scale to improve geological, stratigraphic and structural controls present attributing possible ore understanding. With the development of the work there were recognized on the desktop three structural domains separated by a thrust fault. For each domain were discriminated the geological units ranging in gneisses, quartzites formed from coarse sediments arcoseanos, and schists. By mapping structures there were found five deformation phases, Dn-2, Dn-1, the Dn event that generated the main foliation (Sn) in high representation and two post-stages Dn with brittle late manifestations. The detail mapping of the Rattlesnake Gallery showed that the mineralized quartz vein is consistent with axial-plane foliation Sn-2 belonging to the oldest deformation Dn-2 phase and that the high grade is distributed in the hinge region folds of the same phase

Caracterização geológica da terminação norte do Domo de Ambrósio - Bahia

The Ambrósio dome is a granodioritic batholiths of elliptical geometry, 40km length in the N-S direction and variable width of up to 8 km, has a weakly deformed nucleus with intensely deformed margins, in its northern portion is intruded in orthogneiss that belong to the Archean basement, and its southern part comes in direct contact with the volcano-sedimentary sequence of Paleoproterozoic Rio Itapicuru Greenstone Belt (RIGB), Bahia. From geological mapping on 1:25:000 scale were recognized two structural domains, termed West Domain and East Domain. From investigation of these domains was identified a major shear zone, which puts in contact two distinct stratigraphic sequences, one west, consisting primarily of metavulcanic and metapyroclastic rocks with records of low-grade regional metamorphism, and east discontinuity a metassedimentary domain, with record of gradational contact metamorphism, deformation and compression generated from the rise of Ambrosio Pluton. Such records put into question the structural and stratigraphic models in the literature so far

Levantamento estrutural da porção norte do Greenstone Belt do rio Itapicuru e dos Alvos Encantado e C1W, Bahia

The study area is located in the geological context of the northern portion of the Rio Itapicuru Greenstone Belt (GBRI), located northeast of the São Francisco Craton, Bahia State. The GBRI is known for its great economic potential for gold mineralization, looking south at Fazenda Brasileiro Mine and North Mine Maria Preta, is situated in the study área. The structural pattern of the northern portion of the Greenstone, theme of this work, is of great importance to understand the mineralization present. To characterize the structural model three geologic sections (scale 1:25000) were made with NW-SE and EW directions and detailing two mineralized targets, Encantado, located northwest of the area, near the city of Nordestina, and C1W, located near Itapicuru River, west of the Maria Preta mine. Thus, field work and petrographic analysis were conducted, that allow to indicate the existence of two structural domains characterized by the existence of a main foliation, low angle dipping main foliation and another with high dip angle, both with NW, moreover, folds occur in the area Dn-1 and post-Dn folds. Dn-1 folds are observed less frequently but they occur mainly forming an oblique foliation and the Sn is present in porphyroblasts observed in petrographic analysis, whereas in relation to the folds post Dn, there are more than one type of folding in area, which differ by the orientation of their axis, a post Dn NS and EW Dn another post. Moreover, two areas of metamorphic green schist (biotite zone) and medium amphibolite, which are directly related to the structural domains found

Molecular approaches for structural characterization of Bothrops L-amino acid oxidases with antiprotozoal activity: cDNA cloning, comparative sequence analysis, and molecular modeling

Two L-amino acid oxidases (LAAOs) were identified by random sequencing of cDNA libraries from the venom glands of Bothrops moojeni (BmooLAAO) and Bothrops jararacussu (Bjussu LAAO). Phylogenetic analysis involving other SV-LAAOs showed sequence identities within the range 83-87% being closely related to those from Agkistrodon and Trimeresurus. Molecular modeling experiments indicated the FAD-binding, substrate-binding, and helical domains of Bmoo and Bjussu LAAOs. The RMS deviations obtained by the superposition of those domains and that from Calloselasma rhodostoma LAAO crystal structure confirm the high degree of structural similarity between these enzymes. Purified BjussuLAAO-I and BmooLAAO-I exhibited antiprotozoal activities which were demonstrated to be hydrogen-peroxide mediated. This is the first report on the isolation and identification of cDNAs encoding LAAOs from Bothrops venom. The findings here reported contribute to the overall structural elucidation of SV-LAAOs and will advance the understanding on their mode of action. (c) 2006 Elsevier B.V. All rights reserved.

Insights into the Specificity of Thioredoxin Reductase-Thioredoxin Interactions. A Structural and Functional Investigation of the Yeast Thioredoxin System

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

IGFR-I expression and structural analysis of the hard palatine mucosa in an ethanol-drinking rat strain (UChA and UChB)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Structural and functional properties of Bp-LAAO, a new L-amino acid oxidase isolated from Bothrops pauloensis snake venom

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Structural bioinformatics study of EPSP synthase from Mycobacterium tuberculosis

The shikimate pathway is an attractive target for herbicides and antimicrobial agent development because it is essential in algae, higher plants, bacteria, and fungi, but absent from mammals. Homologues to enzymes in the shikimate pathway have been identified in the genome sequence of Mycobacterium tuberculosis. Among them, the EPSP synthase was proposed to be present by sequence homology. Accordingly, in order to pave the way for structural and functional efforts towards anti-mycobacterial agent development, here we describe the molecular modeling of 5-enolpyruvylshikimate-3-phosphate (EPSP) synthase isolated from M. tuberculosis that should provide a structural framework on which the design of specific inhibitors may be based on. Significant differences in the relative orientation of the domains in the two models result in open and closed conformations. The possible relevance of this structural transition in the ligand biding is discussed. (C) 2003 Elsevier B.V. All rights reserved.

Low-Resolution Molecular Models Reveal the Oligomeric State of the PPAR and the Conformational Organization of Its Domains in Solution

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Structural and morphological changes in Poly(caprolactone)/poly(vinyl chloride) blends caused by UV irradiation

Films made from a blend of poly(epsilon-caprolactone) and poly(vinyl chloride) (PCL/PVC) retained high crystallinity in a segregated PCL phase. Structural and morphological changes produced when the films were exposed to high potency ultraviolet (UV) irradiation for 10 h were measured by UV-Vis spectroscopy (UV-Vis), Fourier Transform Infrared Spectroscopy (FTIR), and Scanning Electron Microscopy (SEM). They were different to those observed with homopolymer PCL and PVC films treated under the same conditions. The FTIR spectra of the PCL/PVC blend suggest that blending decreased the susceptibility of the PCL to crystallize when irradiated. Similarly, although scanning electron micrographs of PCL showed evidence of growth of crystalline domains, particularly after UV irradiation, the images of PCL/PVC were fairly featureless. It is apparent that the degradation behavior is strongly influenced by the interaction of the two polymers in the amorphous phase.

Losing identity: structural diversity of transposable elements belonging to different classes in the genome of Anopheles gambiae

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Structural Characterization of Peruvian Carrot (Arracacia xanthorrhiza) Starch and the Effect of Annealing on Its Semicrystalline Structure

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)