Active-site properties of Phrixotrix railroad worm green and red bioluminescence-eliciting luciferases

The luciferases of the railroad worm Phrixotrix (Coleoptera: Phengodidae) are the only beetle luciferases that naturally produce true red bioluminescence. Previously, we cloned the green- (PxGR) and red-emitting (PxRE) luciferases of railroad worms Phrixotrix viviani and P. hirtus[OLE1]. These luciferases were expressed and purified, and their active-site properties were determined. The red-emitting PxRE luciferase displays flash-like kinetics, whereas PxGR luciferase displays slow-type kinetics. The substrate affinities and catalytic efficiency of PxRE luciferase are also higher than those of PxGR luciferase. Fluorescence studies with 8-anilino-1-naphthalene sulfonic acid and 6-p-toluidino-2-naphthalene sulfonic acid showed that the PxRE luciferase luciferin-binding site is more polar than that of PxGR luciferase, and it is sensitive to guanidine. Alutagenesis and modelling studies suggest that several invariant residues in the putative luciferin-binding site of PxRE luciferase cannot interact with excited oxyluciferin. These results suggest that one portion of the luciferin-binding site of the red-emitting luciferase is tighter than that of PxGR luciferase, whereas the other portion could be more open and polar.

Molecular insights on the evolution of the lateral and head lantern luciferases and bioluminescence colors in Mastinocerini railroad-worms (Coleoptera: Phengodidae)

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

The influence of the region between residues 220 and 344 and beyond in Phrixotrix railroad worm luciferases green and red bioluminescence

To find the regions having a major influence on the bioluminescence spectra of railroad worm luciferases, we constructed new chimeric luciferases switching the fragments from residues 1-219 and from 220-545 between Phrixotrix viviani (PxvGR; λmax = 548 nm) green light-emitting luciferase and Phrixothrix hirtus (PxhRE; λmax = 623 nm) red light-emitting luciferases. The emission spectrum (λmax = 571 nm) and KM for luciferin in the chimera PxRE220GR (1-219, PxhRE; 220-545, PxvGR) suggested that the region above residue 220 of PxvGR had a major effect on the active site. However, switching the sequence between the residues 226-344 from PxvGR luciferase into PxhRE (PxREGRRE) luciferase resulted in red light emission (λmax = 603 nm), indicating that the region 220-344 by itself does not determine the emission spectrum. Furthermore, the sequence before residue 220 of the green-emitting luciferase is incompatible for light emission with the sequence above residue 220 of PxhRE. These results suggest that the fragments before and after residue 220, which correspond to distinct subdomains, may fold differently in the green- and red-emitting luciferases, affecting the active site conformation.

Method for estimating railroad track settlements due to dynamic traffic loads

This paper is the result of real-scale physical modeling study designed to simulate the load-deformation characteristics of railroad foundation systems that include the railroad ties, the ballast, and the sub-base layers of a railroad embankment. The study presents comparisons of the application of dynamic loads of 100kN on the rails, and the resulting deformations during a 500,000 cycle testing period for three rail support systems; wood, concrete and steel. The results show that the deformation curve has an exponential shape, with the larger portion of the deformation occurring during the first 50,000 load cycles followed by a tendency to stabilize between 100,000 to 500,000 cycles. These results indicate that the critical phase of deformations of a new railroad is within the first 50,000 cycles of loading, and after that, it slowly attenuates as it approaches a stable value. The paper also presents empirically derived formulations for the estimation of the deformations of the rail supports as a result of rail traffic.

Geotechnical and structural behavior of the railroad track in large-scale apparatus

This paper analyses the static and dynamic behavior of the railroad track model in laboratory. Measurements of stresses and strains on a large-scale railroad track apparatus were studied. The model includes: compacted soil, representing the final layers of platform, ballast layer, and ties (steel, wooden, and pre-stressed concrete). The soil and soil ballast interface were instrumented with pneumatic stress gauge. Settlement measurement device were positioned at the same levels as the load cells. Loads were applied by hydraulic actuators, statically and dynamically. After the prescribed number of load cycles, in pre-determined intervals, stresses and strains were measured. Observations indicate that stress and strain distributions, transmitted by wooden or steel ties, behave similarly. A more favorable behavior was observed with pre-stressed concrete mono block ties. Non-linear response was observed after a threshold numbers of cycles were surpassed, showing that the strain modulus increases with the numbers of cycles. © 2009 IOS Press.

O segredo da longevidade segundo as percepções dos próprios longevos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Adolescentes e grávidas: onde buscam apoio?

Adolescência é época de crise, mudança, readaptação ao novo corpo e de novas atitudes frente a vida. Se somarmos a isso o significado da gravidez, dos pontos de vista pessoal, social e familiar, compreenderemos como a gestação pode ser um evento difícil para a adolescente. O presente estudo teve como objetivo identificar onde as adolescentes grávidas buscam apoio. Evidenciou-se que as entrevistadas puderam contar com o apoio da família, principalmente dos pais e, com menos freqüência com o do pai do bebê, bem como a aceitação da gravidez, sua relação com o abandono escolar, a visão idealizada dessas garotas acerca da gestação e expectativas futuras, a preocupação com aspectos biológicos e a despreocupação com problemas concretos.

Ressignificação existencial do pretérito e longevidade humana

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Characterization of operational safety in offshore oil wells

The main concern of activities developed in oil and gas well construction is safety. But safety during the well construction process is not a trivial subject. Today risk evaluation approaches are based in static analyses of existent systems. In other words, those approaches do not allow a dynamic analysis that evaluates the risk for each alteration of the context. This paper proposes the use of Quantitative and Dynamic Risk Assessment (QDRA) to assess the degree of safety of each planned job. The QDRA can be understood as a safe job analysis approach, developed with the purpose of quantifying the safety degree in entire well construction and maintenance activities. The QDRA is intended to be used in the planning stages of well construction and maintenance, where the effects of hazard on job sequence are important unknowns. This paper also presents definitions of barrier, and barriers integrated set (BIS), and a modeling technique showing their relationships. (c) 2006 Elsevier B.V. All rights reserved.

River avulsions on the Taquari megafan, Pantanal wetland, Brazil

The Pantanal wetland is located in a tectonically active interior sedimentary basin in west-central Brazil. The south-flowing Paraguay River is the trunk-river of an alluvial constructional landform comprising several large alluvial fans, the largest one of which is the Taquari megafan. The Taquari River flows in two distinct geomorphologic zones within the megafan. Entrenched on sediments of Pleistocene fan lobes, the Taquari River flows in a 3 to 5 km wide meander belt in the upper fan, where avulsion is hindered by entrenchment. Downstream of the intersection point, stream discharge progressively decreases and the Taquari River becomes narrow and shallow toward the Paraguay River plain. Within the distributary fan lobe, the channel-levee sandy complex is topographically higher than the adjacent floodplains and avulsion is a natural consequence of crevasses in the natural levees. Many channel avulsions have occurred during the last decades and documented cases show that significant channel changes may take place in a few years. Beginning with crevassing in 1988 and ending with the abandonment of the former channel in 1998, the river completely changed course in the lower fan. Presently, a major avulsion is occurring in the upper portion of the growing fan lobe, where many crevasses have appeared in the natural levees with associated splays onto the floodbasin. New anastomosed channels have formed north of the Taquari River, but downstream of them the flow is unconfined and the water spreads into natural floodbasins. This avulsion is still in process and allows observation of channel evolution, the geomorphic features produced, the sedimentary processes involved, and resulting effects. If the new channels do not rejoin the main channel, the river mouth may abandon its present master channel and shift to a position a hundred kilometers north from its present position. A large volume of sediment has been transferred to the floodbasin, with progradation of crevasse splay deposits over fine overbank sediments. Many geomorphic features, recognizable in satellite and radar images, clearly show that avulsion has occurred many limes before in the Taquari River. Avulsion belt deposits and former diverted channels testify to ancient avulsion events within the fan lobe and show that progradation of splays onto the floodbasin is the most important infilling process within the Taquari distributary fan lobe. The avulsion process in the lower Taquari River has accelerated in the last 30 years, along with the magnitude of flooding. Pasture and intensive agriculture in the catchment area has increased the sediment supply to the wetland, but larger floods are also a consequence of higher rainfall since 1973. Avulsion and floods have been a cause of great concern among the local population and landowners. Before human intervention in attempting to control floods, however, a better understanding of the avulsive river system is needed, especially because a major navigation project including the channelization of the Paraguay River was recently proposed. (c) 2005 Elsevier B.V. All rights reserved.

Habermas lendo Peirce

Entre as várias referências feitas ao pensamento de Peirce, ao longo de sua carreira filosófica, dois textos foram tomados como exemplares da leitura que Jürgen Habermas faz do pensamento de Peirce e, ao lado das diferenças encontradas entre os dois textos, dois itens muito importantes se conservam: a verdadeira admiração pela virada pragmática promovida por aquele filósofo e cientista, que será seguida por seu leitor, e a séria restrição feita à progressiva tendência do pensamento de abandonar a intersubjetividade como garantia da objetividade da semiose, dando preferência a uma fundamentação cosmológica para todo conhecimento. Embora esta última restrição pudesse ser criticada em sua pertinência, tanto a admiração manifesta à contribuição feita por Peirce ao pensamento filosófico com sua proposta pragmática, quanto a restrição a um suposto abandono das relações pessoais na base da semiose, sem dúvida, manifestam o viés filosófico de Habermas lendo um autor que ele admira, mas que não pretende seguir como um exegeta.

The dawn lek of the Swallow-tailed Hummingbird

We studied the lek behavior of the Swallow-tailed Hummingbird (Eupetomena macroura) in an urbanized area in S (a) over tildeo Paulo state, Southeastern Brazil. During the 22-month study we identified a total of 26 lekking territories in one lek that covered an area of approximately 12 ha. The lek was active throughout the year; the number of singing males per morning ranged from 6-15. The abandonment of territories and the establishment of new ones caused continuous rearrangement of lek boundaries. Lekking territories had a mean size of 217 m(2) and were separated from each other by 24-120 m. on average, males started singing 27 min before sunrise and kept singing for 17 min. At the end of this period and after a few minutes of silent perching, they abandoned their lekking territories until the next morning. During the singing period. males spent 72-100% of the time inside their territories. The lek behavior of E. macroura is unusual compared to other lekking hummingbirds because of the short daily period of lekking, restricted to just before Sunrise. Since males and females of E. macroura possibly defend feeding territories throughout the rest of the day, the short lekking period may represent a tradeoff between two different time budget pressures from lekking and feeding activities.

Floodplain construction in an anastomosed river

Fluvial environments and sedimentary facies involved in the floodplain (C2a type) construction of an anastomosed river system (Upper Parana River, Brazil) were studied. Sediment volume of floodplain deposits and sedimentation rate of each environment were obtained: channel (51.56%; 8.5 mm/yr), splay (33.85%; 1.27 mm/yr), pond (8.60%; 1.0 mm/yr), abandonment (3.64%; 3.87 mm/yr) and natural levee (3.41%; 2.34 mm/yr), reaching a total sedimentation rate average of 5.07 mm/yr. The causes of abandonment are also discussed. (C) 2003 Elsevier B.V. Ltd and INQUA. All rights reserved.

Analise espacial de populacao: o caso da depressao demografica na Regiao da Alta Paulistra (Marilia-SP).

The population redistribution processes considered at a micro level, such as that for the Upper-Paulista Railroad micro-region (Marilia) in Brazil, shows that for nearly 50 years there was accelerated demographic growth followed immediately afterwards by varied declines involving the rural and urban populations.-from English summary

Historico da vacinacao antivariolica no Brasil

A historical chronology of smallpox vaccination in Brazil is presented, with emphasis on the State of Sao Paulo. We also present the scientific and philosophical concepts that influenced the regulation and practice of vaccination in Sao Paulo based on the historiographic bibliography, legislation about vaccination, and the debates in the state legislative body. Discovered by Jenner in 1796, the vaccine reached in Brazil in 1804 and was only used in the colonial capital, the city of Rio de Janeiro. In the 1890 decade, smallpox, side by side with yellow fever, typhoid fever and other pestilential diseases, was the major health problem in the State of Sao Paulo. There was also the fear that the vaccine might transmit syphilis, an Unfounded attitude since the product used in Sao Paulo (the 'animal vaccine') was elaborated from bovine serum. The immediate necessity to fight a highly lethal disease that threatened the State population and the coffee-growing business led to the abandonment of the fears and of the liberal principles in favor of the sanitary needs. The vaccine became compulsory in 1891 in the State of Sao Paulo and its application met no resistance on the part of the population, in contrast to the so-called 'Vaccine Revolt' that would occur in Rio de Janeiro in 1904.