Characterization of the genetic diversity of Mycobacterium tuberculosis in São Paulo city, Brazil

Background: Tuberculosis is a major health problem in São Paulo, Brazil, which is the most populous and one of the most cosmopolitan cities in South America. To characterize the genetic diversity of Mycobacterium tuberculosis in the population of this city, the genotyping techniques of spoligotyping and MIRU were applied to 93 isolates collected in two consecutive years from 93 different tuberculosis patients residing in São Paulo city and attending the Clemente Ferreira Institute (the reference clinic for the treatment of tuberculosis). Findings. Spoligotyping generated 53 different spoligotype patterns. Fifty-one isolates (54.8%) were grouped into 13 spoligotyping clusters. Seventy- two strains (77.4%) showed spoligotypes described in the international databases (SpolDB4, SITVIT), and 21 (22.6%) showed unidentified patterns. The most frequent spoligotype families were Latin American Mediterranean (LAM) (26 isolates), followed by the T family (24 isolates) and Haarlem (H) (11 isolates), which together accounted for 65.4% of all the isolates. These three families represent the major genotypes found in Africa, Central America, South America and Europe. Six Spoligo-International- types (designated SITs by the database) comprised 51.8% (37/72) of all the identified spoligotypes (SIT53, SIT50, SIT42, SIT60, SIT17 and SIT1). Other SITs found in this study indicated the great genetic diversity of M. tuberculosis, reflecting the remarkable ethnic diversity of São Paulo city inhabitants. The MIRU technique was more discriminatory and did not identify any genetic clusters with 100% similarity among the 93 isolates. The allelic analysis showed that MIRU loci 26, 40, 23 and 10 were the most discriminatory. When MIRU and spoligotyping techniques were combined, all isolates grouped in the 13 spoligotyping clusters were separated. Conclusions: Our data indicated the genomic stability of over 50% of spoligotypes identified in São Paulo and the great genetic diversity of M. tuberculosis isolates in the remaining SITs, reflecting the large ethnic mix of the São Paulo city inhabitants. The results also indicated that in this city, M. tuberculosis isolates acquired drug resistance independently of genotype and that resistance was more dependent on the selective pressure of treatment failure and the environmental circumstances of patients. © 2011 Leite et al; licensee BioMed Central Ltd.

Estrutura e evolução cariotípica de peixes ciclídeos sul americanos

Pós-graduação em Biologia Geral e Aplicada - IBB

Avaliação do potencial tripanocida dos óleos essenciais de Melampodium divaricatum e Hedychium coronarium e dos extratos de Polygonum ferrugineum em cepas de Trypanosoma brucei

Pós-graduação em Biotecnologia - IQ

Genotipagem por Spoligotyping e MIRU de Mycobacterium tuberculosis provenientes de pacientes com tuberculose pulmonar

Pós-graduação em Biociências e Biotecnologia Aplicadas à Farmácia - FCFAR

Comparing river basins world-wide and contrasting inland fisheries in Africa and Central Amazonia

An analysis of covariance relating basin area (A, km2) to river length (L, km) and discharge rate (D, m3 s-1) was performed for two continents and showed that the two covariates (L and D) were highly significant and that the strength of the relationship changed between continents. For comparison, D was excluded but the result remained the same. Although geomorphological models are useful for establishing global levels of production, these regressions should be applied with caution. Historically, simple statistical models were developed to predict fish catches in rivers. These, based upon regression of catches on channel length or basin area for Africa and Central Amazonia, are contrasted in this paper because of their generally similar approach.

Relics of eclogite facies assemblages in the Ceara Central Domain, NW Borborema Province, NE Brazil: Implications for the assembly of West Gondwana

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Occurrence and geochemistry of metamafic rocks from the Forquilha Eclogite Zone, central Ceara (NE Brazil): geodynamic implications

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Molecular and geographic analyses of vampire bat-transmitted cattle rabies in central Brazil

Background: Vampire bats are important rabies virus vectors, causing critical problems in both the livestock industry and public health sector in Latin America. In order to assess the epidemiological characteristics of vampire bat-transmitted rabies, the authors conducted phylogenetic and geographical analyses using sequence data of a large number of cattle rabies isolates collected from a wide geographical area in Brazil.Methods: Partial nucleoprotein genes of rabies viruses isolated from 666 cattle and 18 vampire bats between 1987 and 2006 were sequenced and used for phylogenetic analysis. The genetic variants were plotted on topographical maps of Brazil.Results: In this study, 593 samples consisting of 24 genetic variants were analyzed. Regional localization of variants was observed, with the distribution of several variants found to be delimited by mountain ranges which served as geographic boundaries. The geographical distributions of vampire-bat and cattle isolates that were classified as the identical phylogenetic group were found to overlap with high certainty. Most of the samples analyzed in this study were isolated from adjacent areas linked by rivers.Conclusion: This study revealed the existence of several dozen regional variants associated with vampire bats in Brazil, with the distribution patterns of these variants found to be affected by mountain ranges and rivers. These results suggest that epidemiological characteristics of vampire bat-related rabies appear to be associated with the topographical and geographical characteristics of areas where cattle are maintained, and the factors affecting vampire bat ecology.

Condom use at last sexual relationship among adolescents of Santiago Island, Cape Verde, - West Africa

Objective: To estimate factors associated with condom use at last sexual intercourse among adolescents.Methods: Cross-sectional study of a representative sample of 368 sexually active adolescents aged 13-17 years from eight public high schools on Santiago Island, Cape Verde, 2007. The level of significance was 5.0% obtained from logistic regression, considering the association between condom use and socio-demographic, sexual and reproductive variables.Results: The prevalence of condom use at last sexual intercourse was 94.9%. Factors associated with condom use at last sexual relationship were: non-Catholic religion (OR=0.68, 95%CI: 0.52; 0.88) and affective-sexual partnership before the interview (OR=5.15, 95%CI: 1.79; 14.80).Conclusions: There was a high prevalence of condom use at last sexual intercourse of adolescents.

Suspensões de Poisson, ergodicidade e o teorema central do limite

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Mapeamento de atributos do solo para o planejamento da irrigação sob pivô central

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Aplicação de modelagem hidrológica associada à análise geoespacial, para caracterização da vazão na micro Central Hidroelétrica Ilha Anchieta - SP

Pós-graduação em Engenharia Mecânica - FEG

Microsatellite analysis supports clonal propagation and reduced divergence of Trypanosoma vivax from asymptomatic to fatally infected livestock in South America compared to West Africa

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Análise quali-qualitativa e por meio de sistema de informações geográficas da arborização do quadrilátero central de Ribeirão Preto, SP

Pós-graduação em Agronomia (Produção Vegetal) - FCAV

Caracterização estrutural da porção central da Bacia de Santos e seu embasamento continental adjacente, através de interpretação de imagens de satélites e geofísicas

The Santos Basin is located in the Brazilian continental margin and includes the coast of Santa Catarina, Paraná, São Paulo and Rio de Janeiro states. Its northern limit is the Campos Basin through the High of Cabo Frio and the southern one with the Pelotas Basin through the Platform of Florianópolis, totaling an area of approximately 350,000 square kilometers in a water depth of 3,000 m. The Paranapanema Lineament has WNW / ESE direction, and extends from the area filled by the Paraná Basin, on the border between the states of Sao Paulo and Parana, lasting up to near the ocean floor along with the fracture zone of Rio de Janeiro. The Capricorn Lineament is a feature inherited from the separation between the continents of Africa and South America, and is the main structural feature NW / SE of the Santos Basin center-south region. These two structures together with other ones with continental origin may be associated with structural features in the sediments from the Santos Basin. This work aims to characterize the structures operating in the central portion of the Santos Basin based on subsurface data in the offshore area (2D seismic) together with data from the surface of the continental basement in a way to correlate the Santos Basin structures with the continental regional traits. This data interpolation showed that the structural features of the continent operates on the submerged zone, the seismic sections show these structural trends for the Paranapanema Lineament / Fracture Zone of Rio de Janeiro, Capricorn Lineament and two fault zones that exhibit structures typical of a transfer zone