Consolidation of the genetic and cytogenetic maps of turbot (Scophthalmus maximus) using FISH with BAC clones

Bacterial artificial chromosomes (BAC) have been widely used for fluorescence in situ hybridization (FISH) mapping of chromosome landmarks in different organisms, including a few in teleosts. In this study, we used BAC-FISH to consolidate the previous genetic and cytogenetic maps of the turbot (Scophthalmus maximus), a commercially important pleuronectiform. The maps consisted of 24 linkage groups (LGs) but only 22 chromosomes. All turbot LGs were assigned to specific chromosomes using BAC probes obtained from a turbot 5x genomic BAC library. It consisted of 46,080 clones with inserts of at least 100 kb and < 5 % empty vectors. These BAC probes contained gene-derived or anonymous markers, most of them linked to quantitative trait loci (QTL) related to productive traits. BAC clones were mapped by FISH to unique marker-specific chromosomal positions, which showed a notable concordance with previous genetic mapping data. The two metacentric pairs were cytogenetically assigned to LG2 and LG16, and the nucleolar organizer region (NOR)-bearing pair was assigned to LG15. Double-color FISH assays enabled the consolidation of the turbot genetic map into 22 linkage groups by merging LG8 with LG18 and LG21 with LG24. In this work, a first-generation probe panel of BAC clones anchored to the turbot linkage and cytogenetical map was developed. It is a useful tool for chromosome traceability in turbot, but also relevant in the context of pleuronectiform karyotypes, which often show small hardly identifiable chromosomes. This panel will also be valuable for further integrative genomics of turbot within Pleuronectiformes and teleosts, especially for fine QTL mapping for aquaculture traits, comparative genomics, and whole-genome assembly.

Community structure of mites (Arachnida: Acari) in six rubber tree clones

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Performance of different rubber tree clones against South American leaf blight (Microcyclus ulei)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Biocompatibility studies of natural rubber latex from different tree clones and collection methods

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Qualidade da madeira e da celulose de clones de Eucalyptus spp. de diferentes densidades

Pós-graduação em Ciência Florestal - FCA

Estimativas de parâmetros genéticos para seleção precoce de clones de Eucalyptus para região com ocorrência de geadas

Further to increase the wood yield, is important goal of forest tree breeding the adaptation of clones through diverse environment, especially for soil and climate. Perennial tree species such as eucalypts, have a long life cycle and the frosts can occur and to be their limiting source of cultivation. The aim of the study was to determine the genetic variability and the genetic correlations between selection ages of clones cultivated in the municipality of Palma So la, SC, Brazil, where frosts are common in the winter. A clonal trial was set up in 2008 in Palma So la, by statistical design of randomized complete blocks considering 29 clones, six replications, six plants per plot, and 3.0m x 3.0 m spacing. The silvicultural characters of total plant height, diameter of breast height (dbh), and wood volume were evaluated through 24, 36, 48, and 60 months old. The deviance analysis and estimates of genetic parameters were based on the REML / BLUP genetic statistical procedure. Significant differences were observed for all traits in the deviance analysis. High correlations and statistically significant between characters were observed, indicating that the early selection will provide significant gains. Part of the clones USP/IPEF 64, USP/IPEF 78, USP/IPEF 52, USP/IPEF 68, and USP/IPEF 74) are potential to be used into the breeding programs and in commercial stands into the studied frost regions.

Estado nutricional e avaliação de caracteres secundários da produção em dois clones jovens de seringueira em São José do Rio Preto, SP

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Efeito Pesticida de Ésteres de Sacarose Sobre Calacarus heveae Feres (Acari: Eriophyidae) em Dois Clones de Seringueira

Sucrose esters are biodegradable, non pollutant and safe for health; moreover, they have shown great potential in the pest control. We tested a crude mix of sucrose esters on the survivorship and oviposition of Calacarus heveae Feres (Acari: Eriophyidae) females, an important rubber tree pest mite. The females were collected from rubber leaflets of the GT 1 and RRIM 600 clones. The mites were kept on stock arenas placed in rearing chamber at 28 + 0,1°C, 80 + 10% of relative humidity and 12h of light phase about two weeks before the assays. After this period, the mites were transferred to assay arenas made with leaflets from the same clone of stock arenas. The survivorship of females sprayed with sucrose esters in the concentrations of 1, 2, 3 and 4 g/L and their oviposition effect with 0.5 and 1 g/L were analyzed. The mites sprayed with 4 g/L had about 80% of mortality, while those with 1 g/L around 60%. All mites that died in the treatments with sucrose ester became dark with wrinkled tegument and decreased their body volume, suggesting dehydration. We also observed the efficacy of 1 g/L concentration to decrease the female oviposition in about 50%, in the third day after spraying. No differences were observed in the mortality and oviposition between females kept on both clones.

Clones de Eucalyptus sp. submetidos a estresse hídrico em dois tipos de solo

Pós-graduação em Agronomia (Irrigação e Drenagem) - FCA

Desenvolvimento inicial de clones IAC de seringueira em São José do Rio Preto, SP

In this study the development of four clones (IAC 35; 40; 300 e 301) of rubber tree [Hevea brasiliensis (Willd. ex A. Juss.) Müell. Arg.] selected by Instituto Agronômico de Campinas were evaluated during the first 24 months of cultivation. The experiment was laid out in randomized block design with three replications and four plants for parcel following the 1.5mx1.0m spacing at São José do Rio Preto, SP. The clone RRIM 600 was used as check. The variables analyzed were the trunk girth, the number of matured whorl, the photosynthesis rate and the concentrations of chlorophyll a, b, total and carotenoids. At the end of the experiment the values of trunk girth at 0.5m above the budgrafting union varied from 5.85 cm (IAC 301) to 10.53 cm (IAC 300) and the mean number of matured whorl varied from 2.58 (IAC 301) to 3.91 (RRIM 600). During the dry season, when the plants were 22 month old, the mean value of photosynthesis rate of IAC 40 and IAC 301 (12mol m-2 s-1) were lower compared to the other clones (15mol m-2 s-1). The chlorophyll a, b and total carotenoids concentrations were equal or superior to the check, never lower. Considering the variables analyzed, excluding the IAC 301, the other clones show performance comparable to RRIM 600.

Teores de rotenona em Clones de Timbó (Derris Spp. Fabaceae) de diferentes regiões da Amazônia e os seus efeitos na emergência de Imagos em Musca Domestica L

The rotenone contents analysis in clones of three timbó species permited the classification of these plants based on their efficiency to control Musca domestica larvae. The results showed significant correlations between the rotenone contents in the Derris urucu and D. nicou clones with the capacity to control the larvae. The plants with high rotenone contents were more effective. The rotenone contents, the effect of Derris species clones on the flics and the localization of the plants origin, showed that among the plants could have happened a populational isolation in the Amazonia during the pleistocene epoch. In Derris sp., that presented lower rotenone contents and was ineffective to control of the larvae, these differences were not observed.

Differential response of clones of eucalypt to glyphosate

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Performance of different rubber tree clones against South American leaf blight (Microcyclus ulei)

This study was aimed to evaluate the behaviour of eighteen clones of Hevea brasiliensis (rubber) against South American leaf blight and tostudy progress of the disease. The experiment was conducted in Cachoeiro de Itapemirim-ES, where 18 clones were evaluated. The experi-mental design was a randomized block with four replicates; each experimental unit consisted of three plants. Evaluations were performed at15-day intervals on 30 leaflets per tree. Disease incidence was quantified and infection classified according to the stages of development andtype of damage. Leaf blight occurred during the entire experimental period; however, disease intensity varied with the resistance level of theclones and the time of year. Clones FX 3864, RRIM 725, RRIM 711, IAC 300 and IAN 873 exhibited the highest resistance to leaf blight.

Composição físico-química e cor de clones de mandioquinha-salsa

This study aimed to characterize the physical and chemical composition of ten items of arracacha grown in the municipality of São Manuel for the 2009 harvest. In the roots of the clones BGH (4560, 5741, 5744, 5746, 5747, 6414, 6513, 6525 and 7609) and the cultivar Amarela de Senador Amaral the characteristics evaluated were: color (L *, a * and b *) and moisture, ash, crude fiber, raw grease, protein, reducing sugars, total sugars and starch. After obtaining the data, an analysis was performed for the variance of test F and comparisons between the means made by the Tukey test at 5% probability. There was no significant difference to the results of luminosity (L *) while BGH 6414 and BGH 5744 showed the highest values for chroma and * BGH 5741, BGH 6414, BGH 7609, 'Amarela de Senador Amaral' BGH 5747 presented the highest chroma values for b *. Clones BGH 7609 and BGH 6414 showed significantly higher levels of dry matter and with the potential yield of agro-industrial processes it would be best suited in the form of frying. The materials that showed significantly larger amounts of ash were BGH 6525, BGH 5747, 'Amarela de Senador Amaral ", BGH 4560, BGH 5746, BGH 6513. Regarding the contents of fatty matter BGH 6525, BGH 5741 and BGH 5744 showed the highest levels. The results of BGH 7609 showed crude fiber significantly higher than the other materials tested, it can be used in diets composed of fibers. BGH 4560 and cultivar had the highest crude protein. BGH 5741 showed the lowest reducing sugar content among the clones, but not significantly different from results found for the cultivar. All clones showed total sugar levels were higher in the cultivar, which may have more flavor. BGH 5741, BGH 5746, BGH 6525 and BGH 6513 showed significantly higher starch content than the cultivar Amarela de Senador Amaral. From these results we conclude that the clones have similar color characteristics, and are potentially a nutritionally adequate substitute for the cultivar.

Genetic differentiation between sympatric populations of Bacillus cereus and Bacillus thuringiensis

Little is known about genetic exchanges in natural populations of bacteria of the spore-forming Bacillus cereus group, because no population genetics studies have been performed with local sympatric populations. We isolated strains of Bacillus thuringiensis and B. cereus from small samples of soil collected at the same time from two separate geographical sites, one within the forest and the other at the edge of the forest. A total of 100 B. cercus and 98 B. thuringiensis strains were isolated and characterized by electrophoresis to determine allelic composition at nine enzymatic loci. We observed genetic differentiation between populations of B. cereus and B. thuringiensis. Populations of a given Bacillus species-B. thuringiensis or B. cereus-were genetically more similar to each other than to populations of the other Bacillus species. Hemolytic activity provided further evidence of this genetic divergence, which remained evident even if putative clones were removed from the data set. Our results suggest that the rate of gene flow was higher between strains of the same species, but that exchanges between B. cereus and B. thuringiensis were nonetheless possible. Linkage disequilibrium analysis revealed sufficient recombination for B. cereus populations to be considered panmictic units. In B. thuringiensis, the balance between clonal proliferation and recombination seemed to depend on location. Overall, our data indicate that it is not important for risk assessment purposes to determine whether B. cereus and B. thuringiensis belong to a single or two species. Assessment of the biosafety of pest control based on B. thuringiensis requires evaluation of the extent of genetic exchange between strains in realistic natural conditions.