Consolidation of the genetic and cytogenetic maps of turbot (Scophthalmus maximus) using FISH with BAC clones

Bacterial artificial chromosomes (BAC) have been widely used for fluorescence in situ hybridization (FISH) mapping of chromosome landmarks in different organisms, including a few in teleosts. In this study, we used BAC-FISH to consolidate the previous genetic and cytogenetic maps of the turbot (Scophthalmus maximus), a commercially important pleuronectiform. The maps consisted of 24 linkage groups (LGs) but only 22 chromosomes. All turbot LGs were assigned to specific chromosomes using BAC probes obtained from a turbot 5x genomic BAC library. It consisted of 46,080 clones with inserts of at least 100 kb and < 5 % empty vectors. These BAC probes contained gene-derived or anonymous markers, most of them linked to quantitative trait loci (QTL) related to productive traits. BAC clones were mapped by FISH to unique marker-specific chromosomal positions, which showed a notable concordance with previous genetic mapping data. The two metacentric pairs were cytogenetically assigned to LG2 and LG16, and the nucleolar organizer region (NOR)-bearing pair was assigned to LG15. Double-color FISH assays enabled the consolidation of the turbot genetic map into 22 linkage groups by merging LG8 with LG18 and LG21 with LG24. In this work, a first-generation probe panel of BAC clones anchored to the turbot linkage and cytogenetical map was developed. It is a useful tool for chromosome traceability in turbot, but also relevant in the context of pleuronectiform karyotypes, which often show small hardly identifiable chromosomes. This panel will also be valuable for further integrative genomics of turbot within Pleuronectiformes and teleosts, especially for fine QTL mapping for aquaculture traits, comparative genomics, and whole-genome assembly.

Amazon forest biomass density maps: tackling the uncertainty in carbon emission estimates

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Relaxation to Fixed Points in the Logistic and Cubic Maps: Analytical and Numerical Investigation

Convergence to a period one fixed point is investigated for both logistic and cubic maps. For the logistic map the relaxation to the fixed point is considered near a transcritical bifurcation while for the cubic map it is near a pitchfork bifurcation. We confirmed that the convergence to the fixed point in both logistic and cubic maps for a region close to the fixed point goes exponentially fast to the fixed point and with a relaxation time described by a power law of exponent -1. At the bifurcation point, the exponent is not universal and depends on the type of the bifurcation as well as on the nonlinearity of the map.

Do woody and herbaceous species compete for soil water across topographic gradients? Evidence for niche partitioning in a Neotropical savanna

Savannas are characterized by sparsely distributed woody species within a continuous herbaceous cover, composed mainly by grasses and small eudicot herbs. This vegetation structure is variable across the landscape, with shifts from open grassland to savanna woodland determined by factors that control tree density. These shifts often appear coupled with environmental variations, such as topographic gradients. Here we investigated whether herbaceous and woody savanna species differ in their use of soil water along a topographic gradient of about 110 m, spanning several vegetation physiognomies generally associated with Neotropical savannas. We measured the delta H-2 and delta O-18 signatures of plants, soils, groundwater and rainfall, determining the depth of plant water uptake and examining variations in water uptake patterns along the gradient. We found that woody species use water from deeper soil layers compared to herbaceous species, regardless of their position in the topographic gradient. However, the presence of a shallow water table restricted plant water uptake to the superficial soil layers at lower portions of the gradient. We confirmed that woody and herbaceous species are plastic with respect to their water use strategy, which determines niche partitioning across topographic gradients. Abiotic factors such as groundwater level, affect water uptake patterns independently of plant growth form, reinforcing vegetation gradients by exerting divergent selective pressures across topographic gradients. (C) 2013 SAAB. Published by Elsevier B.V. All rights reserved.

Análise morfotectônica e morfoestrutural no controle de erosões hídricas lineares na região de Marília (SP)

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Histometric analysis and topographic characterization of cp Ti implants with surfaces modified by laser with and without silica deposition

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Effects of aging procedures on the topographic surface, structural stability, and mechanical strength of a ZrO2-based dental ceramic

Objective. To determine the effects of different aging methods on the degradation and flexural strength of yttria-stabilized tetragonal zirconia (Y-TZP)Methods. Sixty disc-shaped specimens (0, 12 mm; thickness, 1.6 mm) of zirconia (Vita InCeram 2000 YZ Cubes, VITA Zahnfabrik) were prepared (ISO 6872) and randomly divided into five groups, according to the aging procedures (n=10): (C) control; (M) mechanical cycling (15,000,000 cycles/3.8 Hz/200N); (T) thermal cycling (6,000 cycles/5-55 degrees C/30 s); (TM) thermomechanical cycling (1,200,000 cycles/3.8 Hz/200N with temperature range from 5 C to 55 C for 60s each); (AUT) 12h in autoclave at 134 degrees C/2 bars; and (STO) storage in distilled water (37 degrees C/400 days). After the aging procedures, the monoclinic phase percentages were evaluated by X-ray diffraction (XRD), and topographic surface analysis was performed by 3D profilometry. The specimens were then subjected to biaxial flexure testing (1 mm/min, load 100 kgf, in water). The biaxial flexural strength data (MPa) were analyzed by 1-way ANOVA and Tukey's test (alpha = 0.05). The data for monoclinic phase percentage and profilometry (Ra) were analyzed by Kruskal-Wallis and Dunn's tests.Results. ANOVA revealed that flexural strength was affected by the aging procedures (p = 0.002). The M (781.6 MPa) and TM (771.3 MPa) groups presented lower values of flexural strength than did C (955 MPa), AUT (955.8 MPa), T (960.8 MPa) and STO (910.4 MPa). The monoclinic phase percentage was significantly higher only for STO (12.22%) and AUT (29.97%) when compared with that of the control group (Kruskal-Wallis test, p = 0.004). In addition, the surface roughnesses were similar among the groups (p = 0.165).Signcance. Water storage for 400 days and autoclave aging procedures induced higher phase transformation from tetragonal to monoclinic; however, they did not affect the flexural strength of Y-TZP ceramic, which decreased only after mechanical and thermomechanical cycling. (C) 2014 Academy of Dental Materials. Published by Elsevier Ltd. All rights reserved.

COINCIDENCES OF FIBREWISE MAPS BETWEEN SPHERE BUNDLES OVER THE CIRCLE

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Investigação sobre deformação neotectônica no lineamento Guapiara, região de Guapiara e Jacupiranga

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Estimativa da erosão na microbacia do Córrego do Gambá no município de Monte Alto, SP

Pós-graduação em Agronomia (Ciência do Solo) - FCAV

Estudo dos efeitos da criação de morfologias antropogênicas em área de mineração

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Alterações morfológicas decorrentes da expansão urbana no setor leste da cidadede Rio Claro (SP): subsídios ao planejamento urbano

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Potencial de ocorrência de avarias ambientais em bacias hidrográficas com ocupação rural mediante análise morfométrica

The understanding of the geo-morphological characteristics allows the identification of flood areas and instability slopes among others important features for land use planning. The study of the hydrological net and the analysis of morphometric parameters help in the geomorphologic characterization, providing specific physics indicators that quantify the risks for environmental damages. The present work used Geographic Information Systems (GIS) and carried out the morphometric analysis of two watersheds in the Alto Rio Sorocaba, municipality of Ibiuna (SP). Using digitalized topographic bases in the scale 1:50,000, the main morphometric parameters were extracted and the Digital Elevation Model (DEM) was obtained. Hence the slope, ground illumination, hill orientation and relief feature maps were elaborated. The characteristics for the two watersheds were quite similar, both have low risks for floods and landslides. Therefore, the concave feature is the predominant hill shape for both watersheds. The morphometric parameters directly related to the river density of the watersheds showed some differences, because the Sorocabuçú watershed presents higher value, resulting in a higher level of relief development. Thus, with this characterization it is possible to provide subsidies for environmental planning actions to the area.

Precision of distances and ordering of microsatellite markers in consensus linkage maps of chromosomes 1, 3 and 4 from two reciprocal chicken populations using bootstrap sampling

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Aspectos topográficos na dinâmica espaço-temporal do saldo de radiação

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)