Evolutionary dynamics of retrotransposable elements Rex1, Rex3 and Rex6 in neotropical cichlid genomes

Background: Transposable elements (TEs) have the potential to produce broad changes in the genomes of their hosts, acting as a type of evolutionary toolbox and generating a collection of new regulatory and coding sequences. Several TE classes have been studied in Neotropical cichlids; however, the information gained from these studies is restricted to the physical chromosome mapping, whereas the genetic diversity of the TEs remains unknown. Therefore, the genomic organization of the non-LTR retrotransposons Rex1, Rex3, and Rex6 in five Amazonian cichlid species was evaluated using physical chromosome mapping and DNA sequencing to provide information about the role of TEs in the evolution of cichlid genomes. Results: Physical mapping revealed abundant TE clusters dispersed throughout the chromosomes. Furthermore, several species showed conspicuous clusters accumulation in the centromeric and terminal portions of the chromosomes. These TE chromosomal sites are associated with both heterochromatic and euchromatic regions. A higher number of Rex1 clusters were observed among the derived species. The Rex1 and Rex3 nucleotide sequences were more conserved in the basal species than in the derived species; however, this pattern was not observed in Rex6. In addition, it was possible to observe conserved blocks corresponding to the reverse transcriptase fragment of the Rex1 and Rex3 clones and to the endonuclease of Rex6. Conclusion: Our data showed no congruence between the Bayesian trees generated for Rex1, Rex3 and Rex6 of cichlid species and phylogenetic hypothesis described for the group. Rex1 and Rex3 nucleotide sequences were more conserved in the basal species whereas Rex6 exhibited high substitution rates in both basal and derived species. The distribution of Rex elements in cichlid genomes suggests that such elements are under the action of evolutionary mechanisms that lead to their accumulation in particular chromosome regions, mostly in heterochromatins. © 2013 Schneider et al.; licensee BioMed Central Ltd.

A homogeneidade de tamanho aumenta as interações agressivas em machos revertidos de tilápia-do-nilo, linhagem GIFT

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Comportamento reprodutivo e cooperação no ciclídeo neotropical Laetacara sp

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Diversidade e hábitos alimentares de peixes de riachos afluentes do rio Teles Pires, drenagem do rio Tapajós, Bacia Amazônica

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Identificação e caracterização de sequências repetidas de DNA no genoma de peixes ciclídeos do gênero Cichla

Pós-graduação em Biologia Geral e Aplicada - IBB

Caracterização espermáticas na subfamília Cichlinae (Perciformes : Chlidae) e suas implicações filogenéticas

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Integrando citogenética e genômica em estudos comparativos entre peixes ciclídeos e outros vertebrados

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Mapeamento cromossômico comparativo em peixes ciclícos utilizando sequências repetitivas de DNA

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Caracterização do ciclo nucleolar e da formação do corpo cromatóide na espermatogênese de alguns vertebrados

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Polyculture of Freshwater Angelfish Pterophyllum scalare and Pacific white shrimp Litopenaeus vannamei in low-salinity water

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

New host records and a checklist of fishes infected with Austrodiplostomum compactum (Digenea: Diplostomidae) in Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

How does tourist monitoring alter fish behavior in underwater trails?

Nature based tourism is becoming more popular because it is perceived as a solution to the conflict between conservation and economic exploitation. Nevertheless, it is known to cause several effects. This paper reports findings whereby monitored tourism avoids triggering adverse effects for social cichlid fish species, Crenicichla lepidota. Measures used included aggression toward territorial intruders and the number of nests built in pristine reference areas for monitored and in non-monitored tourist areas. We observed suppressed aggressive behavior and suppressed nesting only in the non-monitored area. We conclude that by monitoring visits, and using techniques including avoiding stepping on the river bed, reducing the number of visitors, prohibiting fish feeding and protecting riparian vegetation, it is possible to avoid the enduring damage caused by nature tourism. (C) 2014 Elsevier Ltd. All rights reserved.

Estudos sobre os comportamentos reprodutivos e cuidados parentais em ciclídeos neotropicais

O estudo objetivou apresentar uma revisão bibliográfica sobre a filogenia, evolução, comportamentos reprodutivos e a evolução do cuidado parental em peixes da família Cichlidae, com ênfase em Cichlinae (ciclídeos Neotropicais). Atualmente a filogenia do grupo tem confirmado o monofiletismo da subfamília Etroplinae (India, Sri Lanka e Madagascar) como grupo irmão dos demais ciclídeos. Ptychochrominae (Madagascar) também monofilética é considerada grupo irmão dos clados Cichlinae (neotropicais) e Pseudocrenilabrinae (africanos), sendo os últimos clados irmãos entre si. Em relação às estratégias reprodutivas dos Cichlidae pode-se dividi-los quanto sua incubação em: Incubadores bucais (mouth-brooders), incubadores de substrato (substrate-spawners) e incubadores bucais tardios (mouth-brooders tardios), tais características podem nos oferecer embasamento para a compreensão das condições pelas quais as diferentes formas de cuidado parental e métodos de acasalamento evoluíram. O estudo enfatiza os comportamentos reprodutivos e cuidados parentais nos Cichlinae, descrevendo comportamentos que auxiliam na compreensão da biologia reprodutiva do grupo e sugerindo hipóteses sobre a origem e irradiação dos Cichlidae

Fishes from Baía da Medalha, southern Pantanal, Brazil: A 20 years review

Located in the Pantanal of Miranda-Abobral, the Baía da Medalha is the largest pond close to the Base de Estudos do Pantanal of the Universidade Federal de Mato Grosso do Sul. The Baía da Medalha has been a study site for several didactic and scientific projects for years. Nevertheless, its fish fauna has never been inventoried. Based on data collected from the beginning of the 1990s up to 2011, we provide a list of fish species from the Baía da Medalha. A total of 97 species were recorded, corresponding to about 40% of the species stated for the Pantanal. Characiformes and Siluriformes were the most species-rich orders, being Characidae and Cichlidae the families with the highest number of species. Regional seasonal flood dynamics and the abundance of aquatic macrophytes may be associated with this high diversity. The representative richness found in this lagoon highlights the importance of such taxonomic surveys to preserve the diversity of aquatic habitats within the Pantanal ecosystem.

Parasitic infections in ornamental cichlid fish in the Peruvian Amazon

The aim of this study was to evaluate the prevalence and seasonal distribution of the main parasite species in Amazonian ornamental cichlids that affect their trade. The study was conducted from August 2007 to September 2009. We sampled 3042 specimens from 9 different species, of which 9.47% had at least one type of external parasite. 81.25% of the cases occurred in the dry season. Crenicichla anthurus (28.57%) was the most parasitized, followed by Aequidens diadema (26.32%), Pterophyllum scalare (22.69%), Cichlasoma sp. (9.52%), Apistogramma sp. (3.88%) and Symphysodon aequifasciatus (3.66%). Monogenea was the most abundant group of parasites, occurring in 66.67% of the cases, of which 96.88% occurred in the dry season. This parasite infested 95.68% of Pterophyllum scalare, 76.67% of Apistogramma sp, 33.33% of Cichlasoma sp. and 23.81% of Symphysodon aequifasciatus cases. Ichthyophthirius multifiliis infested 100% of Aequidens diadema, 76.19% of Symphysodon aequifasciatus, 66.67% of Cichlasoma sp, 41.67% of Crenicichla anthurus and 23.33% of Apistogramma sp cases. Myxosporidia infested 58.33% of Crenicichla anthurus. Trichodina infested 4.32% of Pterophyllum scalare. The prevalence of these parasites is related to the season, preferred habitat, fish behavior, individual susceptibility and handling of animals during transportation by fishermen.