Crystallographic portrayal of different conformational states of a Lys49 phospholipase A2 homologue: Insights into structural determinants for myotoxicity and dimeric configuration

Catalytically inactive phospholipase A2 (PLA2) homologues play key roles in the pathogenesis induced by snake envenomation, causing extensive tissue damage via a mechanism still unknown. Although, the amino acid residues directly involved in catalysis are conserved, the substitution of Asp49 by Arg/Lys/Gln or Ser prevents the binding of the essential calcium ion and hence these proteins are incapable of hydrolyzing phospholipids. In this work, the crystal structure of a Lys49-PLA2 homologue from Bothrops brazili (MTX-II) was solved in two conformational states: (a) native, with Lys49 singly coordinated by the backbone oxygen atom of Val31 and (b) complexed with tetraethylene glycol (TTEG). Interestingly, the TTEG molecule was observed in two different coordination cages depending on the orientation of the nominal calcium-binding loop and of the residue Lys49. These structural observations indicate a direct role for the residue Lys49 in the functioning of a catalytically inactive PLA2 homologue suggesting a contribution of the active site-like region in the expression of pharmacological effects such as myotoxicity and edema formation. Despite the several crystal structures of Lys49-PLA2 homologues already determined, their biological assembly remains controversial with two possible conformations. The extended dimer with the hydrophobic channel exposed to the solvent and the compact dimer in which the active site-like region is occluded by the dimeric interface. In the MTX-II crystal packing analysis was found only the extended dimer as a possible stable quaternary arrangement. © 2012 Elsevier B.V.

Responses of aquatic insect functional diversity to landscape changes in Atlantic forest

The Atlantic Forest domain, one of the 25 world's hotspots for biodiversity, has experienced dramatic changes in its landscape. While the loss of species diversity is well documented, functional diversity has not received the same amount of attention. In this study, we evaluated functional diversity of insects in streams utilizing three indices: functional diversity (FD), functional dispersion (FDis), and functional divergence (FDiv), seeking to understand the roles of three predictor sets in explaining functional patterns: (1) bioclimatic and landscape variables; (2) spatial variables; and (3) local environmental variables. We determined the amount of variation in different measures of functional diversity that was explained by each predictor set and their interplays using variation partitioning. Our study showed that variation in functional diversity is better explained by a set of variables linked to different scales dependent on spatial structures, indicating the importance of landscape and mainly environmental variables in the functional organization of aquatic insect communities, and that the relative importance of predictor sets depends on the indices considered. Variation in FD was better explained by the interplay among the three predictor sets and by local environmental variables, whereas variation in FDis was better explained by spatial variables and by the interplay between environmental and spatial variables. Variation in FDiv was not significantly explained by any predictors. Our study adds more evidence on the harmful effects caused by landscape changes on biodiversity in the Atlantic Forest, suggesting that these effects also influence the functional organization of stream insect communities. © 2013 The Author(s) Journal compilation © 2013 by The Association for Tropical Biology and Conservation.

A Framework to Optimize Biodiversity Restoration Efforts Based on Habitat Amount and Landscape Connectivity

The effectiveness of ecological restoration actions toward biodiversity conservation depends on both local and landscape constraints. Extensive information on local constraints is already available, but few studies consider the landscape context when planning restoration actions. We propose a multiscale framework based on the landscape attributes of habitat amount and connectivity to infer landscape resilience and to set priority areas for restoration. Landscapes with intermediate habitat amount and where connectivity remains sufficiently high to favor recolonization were considered to be intermediately resilient, with high possibilities of restoration effectiveness and thus were designated as priority areas for restoration actions. The proposed method consists of three steps: (1) quantifying habitat amount and connectivity; (2) using landscape ecology theory to identify intermediate resilience landscapes based on habitat amount, percolation theory, and landscape connectivity; and (3) ranking landscapes according to their importance as corridors or bottlenecks for biological flows on a broader scale, based on a graph theory approach. We present a case study for the Brazilian Atlantic Forest (approximately 150 million hectares) in order to demonstrate the proposed method. For the Atlantic Forest, landscapes that present high restoration effectiveness represent only 10% of the region, but contain approximately 15 million hectares that could be targeted for restoration actions (an area similar to today's remaining forest extent). The proposed method represents a practical way to both plan restoration actions and optimize biodiversity conservation efforts by focusing on landscapes that would result in greater conservation benefits. © 2013 Society for Ecological Restoration.

Relação entre os aspectos fisiográficos e pedológicos e a instalação do bioma cerrado no contexto da evolução da paisagem em Franca, SP

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Modelagem evolutiva do planalto Sul de Minas através de correlações entre análise morfométrica da rede de drenagem e termocronologia por traços de fissão em apatitas

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Uso e manejo de plantas alimentares em ambientes agrícolas e florestais em Iporanga, SP

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Territórios e memórias: narrativas de mulheres que migraram na segunda metade do século XX

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Diversidade das comunidades de peixes de riachos em função da estrutura da paisagem em microbacias da bacia do rio Corumbataí, SP

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Compartimentação morfoestrutural da região do Triângulo Mineiro (MG): aplicado a exploração de recursos hídricos subterrâneos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Termocronologia e história denudacional da Serra do Mar e implicações no controle deposicional da Bacia de Santos

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Evolução tectônica dos altos estruturais de Pitanga, Artemis, Pau D'Alho e Jibóia - Centro do Estado de São Paulo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Patrimônio urbano de Londrina

Pós-graduação em Geografia - IGCE

Estruturação da cidade e morfologia urbana: um estudo sobre cidades de porte médio da rede urbana paulista

Pós-graduação em Geografia - FCT

COBERTURAS SEDIMENTARES CENOZÓICAS DA BACIA DO RIO JUNDIAÍ – SP.

Este trabalho apresenta a caracterização geológica das coberturas sedimentares cenozóicas da bacia do Rio Jundiaí e suas relações com a evolução geológica regional. Sobre o Embasamento Cristalino, ocorrem depósitos paleozóicos pertencentes ao Grupo Itararé, depósitos terciários e quaternários. Os depósitos terciários constituem ocorrências locais, pois grande parte das seqüências foi removida pela erosão e os restos estão quase sempre encobertos pelas coberturas mais jovens. Correspondem a um antigo sistema de leques aluviais com área-fonte na Serra do Japi e sua origem se associa à formação das escarpas de falhas que controlam as áreas serranas. Os depósitos colúvio-eluviais são constituídos por material areno-argiloso maciço com linhas de pedra basais, que compõe corpos descontínuos controlados por estruturas geológicas. Os depósitos aluviais também acompanham importantes direções estruturais. A distribuição destas coberturas é condicionada pelo relevo, onde conjuntos de falhas de direção predominantemente NW-SE promoveram o abatimento da porção central da área, controlando a implantação da bacia hidrográfica do Rio Jundiaí. A ocorrência de depósitos aluviais em locais onde atuam esforços transtensivos é de grande importância para a exploração dos recursos hídricos subterrâneos. O afeiçoamento da paisagem condicionado por fatores endógenos atesta a importância dos processos neotectônicos em ambiente intraplaca.