Probing the binding of the coumarin drugs using peptide fragments of DNA gyrase B protein

Bacterial DNA gyrase, has been identified as the target of several antibacterial agents, including the coumarin drugs. The coumarins inhibit the gyrase action by competitive binding to the ATP-binding site of DNA gyrase B (GyrB) protein. The high in vitro inhibitory potency of coumarins against DNA gyrase reactions has raised interest in studies on coumarin-gyrase interactions. In this context, a series of low-molecular weight peptides, including the coumarin resistance-determining region of subunit B of Escherichia coli gyrase, has been designed and synthesized. The first peptide model was built using the natural fragment 131-146 of GyrB and was able to bind to novobiocin (K a = 1.8 ± 0.2 × 105/M) and ATP (Ka = 1.9 ± 0.4 × 103/M). To build the other sequences, changes in the Arg136 residue were introduced so that the binding to the drug was progressively reduced with the hydrophobicity of this residue (Ka = 1.3 ± 0.1 × 105/M and 1.0 ± 0.2 × 105/M for Ser and His, respectively). No binding was observed for the change Arg136 to Leu. In contrast, the binding to ATP was not altered, independently of the changes promoted. On the contrary, for peptide-coumarin and peptide-ATP complexes, Mg2+ appears to modulate the binding process. Our results demonstrate the crucial role of Arg 136 residue for the stability of coumarin-gyrase complex as well as suggest a different binding site for ATP and in both cases the interactions are mediated by magnesium ions. Copyright Blackwell Munksgaard, 2005.

The Canny detector with edge region focusing using an anisotropic diffusion process

This paper proposes a methodology for edge detection in digital images using the Canny detector, but associated with a priori edge structure focusing by a nonlinear anisotropic diffusion via the partial differential equation (PDE). This strategy aims at minimizing the effect of the well-known duality of the Canny detector, under which is not possible to simultaneously enhance the insensitivity to image noise and the localization precision of detected edges. The process of anisotropic diffusion via thePDE is used to a priori focus the edge structure due to its notable characteristic in selectively smoothing the image, leaving the homogeneous regions strongly smoothed and mainly preserving the physical edges, i.e., those that are actually related to objects presented in the image. The solution for the mentioned duality consists in applying the Canny detector to a fine gaussian scale but only along the edge regions focused by the process of anisotropic diffusion via the PDE. The results have shown that the method is appropriate for applications involving automatic feature extraction, since it allowed the high-precision localization of thinned edges, which are usually related to objects present in the image. © Nauka/Interperiodica 2006.

Influence of the tool edge geometry on specific cutting energy at high-speed cutting

This paper presents specific cutting energy measurements as a function of the cutting speed and tool cutting edge geometry. The experimental work was carried out on a vertical CNC machining center with 7,500 rpm spindle rotation and 7.5 kW power. Hardened steels ASTM H13 (50 HRC) were machined at conventional cutting speed and high-speed cutting (HSC). TiN coated carbides with seven different geometries of chip breaker were applied on dry tests. A special milling tool holder with only one cutting edge was developed and the machining forces needed to calculate the specific cutting energy were recorded using a piezoelectric 4-component dynamometer. Workpiece roughness and chip formation process were also evaluated. The results showed that the specific cutting energy decreased 15.5% when cutting speed was increased up to 700%. An increase of 1 °in tool chip breaker chamfer angle lead to a reduction in the specific cutting energy about 13.7% and 28.6% when machining at HSC and conventional cutting speed respectively. Furthermore the workpiece roughness values evaluated in all test conditions were very low, closer to those of typical grinding operations (∼0.20 μm). Probable adiabatic shear occurred on chip segmentation at HSC Copyright © 2007 by ABCM.

Soil seed banks in tropical forest fragments with different disturbance histories in southeastern Brazil

Soil seed banks are considered an important mechanism for natural regeneration in tropical forest ecosystems. This paper investigated the soil seed bank in two semideciduous seasonal tropical forest fragments with different disturbance histories in Botucatu, southeastern Brazil. In each study site, 40 superficial soil samples (30 cm × 30 cm × 5 cm) were taken at the end of both the dry and rainy seasons. The seeds were estimated by the germination method. Average soil seed density was 588.6 and 800.3 seeds m-2, respectively, for site 1 (less disturbed) and site 2 (more disturbed). Seed density and diversity (H′) were significantly higher in site 2 in both seasons. Non-woody taxa predominated in both fragments, but pioneer tree species were better represented in the less disturbed forest. Both ecosystems have a potential for regeneration from soil seed banks, but this potential is higher in the less disturbed site. Low richness and density of pioneer tree species in the seed bank indicate that the ecosystem has lost its resilience. The seed bank is not as important in these ecosystems as in other forests. Results indicate that management strategies to restore these forests should take into account the possibility of recovering soil seed bank processes and dynamics. © 2007 Elsevier B.V. All rights reserved.

Edge detection in digital images using fuzzy numbers

The purpose of this paper is to introduce a new approach for edge detection in grey shaded images. The proposed approach is based on the fuzzy number theory. The idea is to deal with the uncertainties concerning the grey shades making up the image and, thus, calculate the appropriateness of the pixels in relation to a homogeneous region around them. The pixels not belonging to the region are then classified as border pixels. The results have shown that the technique is simple, computationally efficient and with good results when compared with both the traditional border detectors and the fuzzy edge detectors. Copyright © 2009, Inderscience Publishers.

Diversity of social wasps on semideciduous seasonal forest fragments with different surrounding matrix in Brazil

We surveyed social wasps (Polistinae) present in forest fragments of northwest of So Paulo state with different surroundings composed of a matrix of citrus crops and sugarcane in the expectation that the former matrix would be more diverse than the latter. We collected specimens actively using attractive liquids. We obtained 20 species in Magda, 13 in Bebedouro, 13 in Mato, and 19 in Barretos. The most common genus was Agelaia in all of the areas. The greatest Shannon-Wiener index of diversity was obtained in Magda (H' = 2.12). Species such as Brachygastra moebiana, Metapolybia docilis, Mischocyttarus ignotus, M. paulistanus and M. consimilis had not been recorded on recent surveys in the state. Furthermore M. consimilis is a new record for the state. We concluded that, with our data, a relation between the occurrence of social wasps and the surrounding matrix was not detected. © 2011 Getulio Minoru Tanaka Junior and Fernando Barbosa Noll.

The use of fragments of thin veneers as a restorative therapy for anterior teeth disharmony: A case report with 3 years of follow-up

Aim: The present case report described the use of contact lens of thin porcelain veneers as a restorative therapy to solve anterior teeth disharmony. Background: Fragments of thin veneers are minimally invasive restorations with little or no dental preparation and present thickness ranging from 0.2 to 0.5 mm. They are used in case of diastema closure, small changes of teeth, color and restoration of teeth with small fractures. Case report: A 25-year-old man was admitted at a dental clinic complaining about the diastema presence on the upper anterior teeth. Patient was referred to an orthodontic treatment in order to provide better distribution of the diastemas and harmonious proportion of the teeth. Afterwards, contact lens of thin porcelain veneers were fabricated on the six upper anterior teeth. Conclusion: Based on the outcomes of this clinical report, we considered the use of fragments of thin veneers as a successful treatment option after 3 years of follow-up. Clinical significance: The fragments of thin veneers have been established to be an interesting alternative to esthetically restore the anterior teeth with minimal invasiveness. However, since it is a new treatment modality, longitudinal studies are necessary to understand the material's behavior.

Helminth parasites of hypsiboas prasinus (Anura: Hylidae) from two atlantic forest fragments, São Paulo State, Brazil

Seventy-seven males of Hypsiboas prasinus from 2 Atlantic forest fragments in the municipalities of Botucatu and Jundiaí, São Paulo State, Brazil, were examined for endoparasites. The frogs were captured in summer (January until March) and winter (July/August) of 2008 and 2009. Thirty-three males (75) from Botucatu were infected with Rhabdias cf. fuelleborni, cosmocerciid nematodes, and Cylindrotaenia americana. Twenty-five tree frogs (78.5) from Jundiaí were infected by Rhabdias cf. fuelleborni, Physaloptera sp., and cosmocerciid nematodes. Only cosmocerciid nematodes presented a statistically significance difference in prevalence (z 4.345; P < 0.001) and mean abundance (t 562.0; P < 0.001) between Botucatu and Jundiaí during the winter. Also, the cosmocerciids exhibited higher mean abundance (t 196.0; P 0.034) in winter when compared with summer at the Jundiaí site. Moreover, to our knowledge, this is the first report of C. americana in the Brazilian Hylidae. This study presents 4 new records of nematodes in H. prasinus. © 2012 American Society of Parasitologists.

Fe K-edge X-ray absorption spectroscopy study of Pb(Fe2/3W 1/3)O3-PbTiO3 multiferroic ceramics

The present paper is a comprehensive study concerning Fe K-edge X-ray absorption spectroscopy (XAS) measurements, which were performed to characterize the local structure of (1 - x)Pb(Fe2/3W1/3)O 3-xPbTiO3 samples as a function of temperature and PbTiO3 content. Results obtained by the fits of extended X-ray absorption fine structure consist with rhombohedral symmetry for Pb(Fe 2/3W1/3)O3 composition at temperatures lower than room temperature. This result is in apparent disagreement with X-ray and neutron diffraction characterization which have been reported. This apparent disagreement is related to the fact that XAS probes the short-range order, whereas X-ray diffraction provides structural information about the average structure. Moreover, as the PbTiO3 content increases, a disorder has been detected at local structure of the FeO6 octahedron. Analysis of X-ray absorption near edge structure spectra did not show modifications in intensity nor energy of transitions. © 2013 American Institute of Physics.

Influence of maxillary incisor edge asymmetries on the perception of smile esthetics among orthodontists and laypersons

Introduction: Our objective was to determine the perception of smile esthetics among orthodontists and laypeople with respect to asymmetries on the maxillary incisor edges in a frontal smile analysis. Methods: Two frontal close-up smile photos of 2 women, 1 white and 1 Afro-Brazilian, were selected for this study. Both smiles displayed healthy maxillary anterior dentitions. The images were digitally altered to create tooth wear on the maxillary left central and lateral incisors in 0.5-mm increments. The final images were randomly assembled into a photo album that was given to 120 judges, 60 orthodontists and 60 laypersons. Each rater was asked to evaluate the attractiveness of the images with visual analog scales. The data collected were statistically analyzed with 1-way analysis of variance with the Tukey post-hoc test and the unpaired Student t test. Results: The most attractive smiles in both types of smiles were those without asymmetries and the 0.5-mm wear in the lateral incisor. In general, tooth wear was considered unattractive by both groups of raters following a pattern: the more tooth wear, the more unattractive the smile; tooth wear in the central incisor was considered more unattractive than in the lateral incisor. For both group of raters, 0.5 mm of wear in the central incisor was considered unattractive, whereas the thresholds for lateral incisor discrepancies were 0.5 mm for orthodontists and 1.0 mm for laypersons. Conclusions: The result of this study corroborates the clinical assumption that symmetry between the maxillary central incisors is a paramount goal for esthetic treatments. Copyright © 2013 by the American Association of Orthodontists.

Mite (Acari; Arachnida) diversity of two native plants in fragments of a semideciduous seasonal forest in Brazil

Studies to determine mite species richness in natural environments are still scarce, and have been conducted mainly in tropical ecosystems. The aim of this study was to determine the species richness of mites on two common native plants in fragments of the semideciduous seasonal forest in the Northwest of São Paulo State, Brazil. In each of eight fragments, 10 specimens of Actinostemon communis (Euphorbiaceae) and 10 of Trichilia casaretti (Meliaceae) were selected and marked. In total, 124 species of mites belonging to 21 families were found on the two plants. Tarsonemidae had the highest diversity (34 species), followed by Phytoseiidae (31), Tetranychidae (9) and Tenuipalpidae (8). Species accumulation curves for the two sampled plants did not reach an asymptote, even with the large sampling effort. Hence, it is estimated that a greater sampling effort may lead to an increase in species richness compared with what was found in this study. The richness of this mite fauna suggests that preservation of these plant species is important to maintain the mite diversity in these forest fragments. © 2013 Taylor & Francis Group, LLC.

Bats (Mammalia: Chiroptera) in urban fragments of Maringá, Paraná, Brazil

Bat assemblages in two urban fragments of Maringá city, north of the state of Paraná, southern Brazil, were inventoried. These fragments, Parque do Ingá (48 ha) and Parque Florestal dos Pioneiros (59 ha), are located in a subtropical region covered by semideciduous Atlantic forest. Bats were sampled with mist-nets from August 2006 to July 2007, over 24 nights (12 hours a night), adding up to a total of 30,240 h.m2 of net effort. A total of 839 individuals were captured belonging to 10 species and four families. Artibeus lituratus was the most abundant species (66% of the sample). The observed richness represents 22% of the bat species recorded for the state, 24% of the bat species occurring in the seasonal semideciduous forest of Paraná, 26% of the species previously recorded in urban environments in Brazil, and 83.4% of the estimated richness by Jackknife 1 (n= 12 species). Studies that provide data on richness and abundance of bat species in urban fragments are becoming increasingly important, but are still poorly available in Brazil. This habitat is especially interesting because anthropogenic pressure can be harmful to bat assemblages, reducing their diversity. © 2013 Check List and Authors.

A importância de fragmentos florestais na diversidade de anfíbios anuros em Icém, Região Noroeste do Estado de São Paulo

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Influência de fragmentos de cerrado vizinhos à seringal (Hevea brasiliensis Muell. Arg.) na distribuição e infecção fúngica de ácaros (Acari, Arachnida)

Pós-graduação em Biologia Animal - IBILCE

Estrutura da fauna de formigas epígeas em fragmentos de Floresta Atlântica Semidecidual com diferentes tamanhos

Pós-graduação em Biologia Animal - IBILCE