Gene Content Analysis of Sugarcane Public ESTs Reveals Thousands of Missing Coding-Genes and an Unexpected Pool of Grasses Conserved ncRNAs

Sugarcane is the most important crop for sugar industry and raw material for bioethanol. Here we present a quantitative analysis of the gene content from publicly available sugarcane ESTs. The current sugarcane EST collection sampled orthologs for ~58 % of the closely-related sorghum proteome, suggesting that more than 10,000 sugarcane coding-genes remain undiscovered. Moreover the existence of more than 2,000 ncRNAs conserved between sugarcane and sorghum was revealed, among which over 500 are also detected in rice, supporting the existence of hundreds of conserved ncRNAs in grasses. New efforts towards sugarcane transcriptome sequencing were needed to sample the missing coding-genes as well as to expand the catalog of ncRNAs. © 2012 Springer Science+Business Media, LLC.

Architecture for publication and universal access to smart transducers

This paper proposes a simple and powerful architecture for publication and universal access to smart transducers, through existing and established open standards. Smart transducers are put to work on standards and styles already included in the Web, exploring resources in Cloud Computing and simplifying access to data. © 2012 IEEE.

The Development of a Universal In Silico Predictor of Protein-Protein Interactions

Protein-protein interactions (PPIs) are essential for understanding the function of biological systems and have been characterized using a vast array of experimental techniques. These techniques detect only a small proportion of all PPIs and are labor intensive and time consuming. Therefore, the development of computational methods capable of predicting PPIs accelerates the pace of discovery of new interactions. This paper reports a machine learning-based prediction model, the Universal In Silico Predictor of Protein-Protein Interactions (UNISPPI), which is a decision tree model that can reliably predict PPIs for all species (including proteins from parasite-host associations) using only 20 combinations of amino acids frequencies from interacting and non-interacting proteins as learning features. UNISPPI was able to correctly classify 79.4% and 72.6% of experimentally supported interactions and non-interacting protein pairs, respectively, from an independent test set. Moreover, UNISPPI suggests that the frequencies of the amino acids asparagine, cysteine and isoleucine are important features for distinguishing between interacting and non-interacting protein pairs. We envisage that UNISPPI can be a useful tool for prioritizing interactions for experimental validation. © 2013 Valente et al.

Four-Boson Systems Close to a Universal Regime

Universal properties of weakly-bound four-boson systems near the scaling limit are discussed by considering recent results obtained from the solution of Faddeev-Yakubovsky (FY) equations, which confirm a previous conjecture on a four-body scale dependence. In the present contribution, within a discussion on our numerical results obtained for the binding energies of two consecutive tetramer states, we are analyzing the relative relevance of the two possible configurations of the four-body system. © 2013 Springer-Verlag Wien.

Range Corrections to Universal Tetramer Properties

The universal properties of weakly-bound tetramers close to the scaling limit are investigated by solving a subtracted set of Faddeev-Yakubovsky (FY) equations for identical bosons with a zero-range interaction. The solution demands a four-body scale independent of the trimer properties. Furthermore, the effect of a finite effective range is introduced in the FY equations, which we show produces results that are distinct from the scale variation. In particular range effects to two universal scaling functions for the tetramers are investigated. The correlation between successive tetramer energies corresponding to states within two Efimov trimer energies, proposed before and studied close to the unitary limit; and the correlation between the position of the four-atom recombination peaks. In this case, we found a shift in the scaling function due to the range, which can be associated to the shift of the data found for caesium atoms, with respect to zero-range calculations, due to a nonvanishing range in the actual experimental setups. © 2013 Springer-Verlag Wien.

Genetic diversity of the HLA-G coding region in Amerindian populations from the Brazilian Amazon: a possible role of natural selection

HLA-G has an important role in the modulation of the maternal immune system during pregnancy, and evidence that balancing selection acts in the promoter and 3′UTR regions has been previously reported. To determine whether selection acts on the HLA-G coding region in the Amazon Rainforest, exons 2, 3 and 4 were analyzed in a sample of 142 Amerindians from nine villages of five isolated tribes that inhabit the Central Amazon. Six previously described single-nucleotide polymorphisms (SNPs) were identified and the Expectation-Maximization (EM) and PHASE algorithms were used to computationally reconstruct SNP haplotypes (HLA-G alleles). A new HLA-G allele, which originated in Amerindian populations by a crossing-over event between two widespread HLA-G alleles, was identified in 18 individuals. Neutrality tests evidenced that natural selection has a complex part in the HLA-G coding region. Although balancing selection is the type of selection that shapes variability at a local level (Native American populations), we have also shown that purifying selection may occur on a worldwide scale. Moreover, the balancing selection does not seem to act on the coding region as strongly as it acts on the flanking regulatory regions, and such coding signature may actually reflect a hitchhiking effect.Genes and Immunity advance online publication, 3 October 2013; doi:10.1038/gene.2013.47.

Utilização de índices de vegetação para estimativa da proteção do solo pela cobertura vegetal: uma contribuição para o uso da equação universal das perdas de solo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

A Igreja Universal e a política: o caso de Marília

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Caracterização da acessibilidade em espaços públicos: a ergonomia e o desenho universal contribuindo para a mobilidade de pessoas portadoras de necessidades especiais : estudo de casos

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Avaliação dos sistemas MTwo Retratamento e ProTaper Universal Retratamento na remoção de guta-percha e novos cimentos endodônticos dos canais radiculares

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Estudo da vulnerabilidade à erosão com a aplicação da Equação Universal de Perda de Solo na alta bacia hidrográfica do rio Jacaré Pepira, utilizando SIG/SPRING

Pós-graduação em Geociências e Meio Ambiente - IGCE

A informação mediada no discurso de Edir Macedo: um análise de editoriais da Folha Universal

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Caracterização da cobertura vegetal na equação universal de perda de solos (fator C) por meio de geotecnologias

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Triagem auditiva neonatal universal: a experiência de dois hospitais públicos no município de Campo Grande - MS, no período de janeiro de 2002 a dezembro de 2005

Pós-graduação em Pediatria - FMB

Caracterização de allexivirus em alho nas regiões sul, sudeste e centro-oeste brasileiro e análise da sanidade vegetal do alho obtido por cultura de meristema e termoterapia na FCA/UNESP

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)