Optimal clone identifier for genomic shotgun libraries: OC Identifier tool

In DNA microarray experiments, the gene fragments that are spotted on the slides are usually obtained by the synthesis of specific oligonucleotides that are able to amplify genes through PCR. Shotgun library sequences are an alternative to synthesis of primers for the study of each gene in the genome. The possibility of putting thousands of gene sequences into a single slide allows the use of shotgun clones in order to proceed with microarray analysis without a completely sequenced genome. We developed an OC Identifier tool (optimal clone identifier for genomic shotgun libraries) for the identification of unique genes in shotgun libraries based on a partially sequenced genome; this allows simultaneous use of clones in projects such as transcriptome and phylogeny studies, using comparative genomic hybridization and genome assembly. The OC Identifier tool allows comparative genome analysis, biological databases, query language in relational databases, and provides bioinformatics tools to identify clones that contain unique genes as alternatives to primer synthesis. The OC Identifier allows analysis of clones during the sequencing phase, making it possible to select genes of interest for construction of a DNA microarray. ©FUNPEC-RP.

Proposal of convergence of e-Learning systems for t-Learning

This article presents considerations about viability on reutilize existing web based e-Learning systems on Interactive Digital TV environment according to Digital TV standard adopted in Brazil. Considering the popularity of Moodle system in academic and corporative area, such system was chosen as a foundation for a survey into its properties to create a specification of an Application Programming Interface (API) for convergence to t-Learning characteristics that demands efforts in interface design area due the fact that computer and TV concepts are totally different. This work aims to present studies concerning user interface design during two stages: survey and detail of functionalities from an e-Learning system and how to adapt them for the Interactive TV regarding usability context and Information Architecture concepts.

Correlação entre a taxa de fertilização e o fuso meiótico em oócitos humanos: Uma meta-análise

Objective: To investigate the relationship between the presence of meiotic spindle in human oocytes and fertilization rates in ICSI cycles. Methods: Search strategies included online surveys of databases from 1990 to 2008. Nine trials fulfilled the inclusion criteria Results: According to the meta-analysis, the results showed statistically significant higher fertilization rate (p<0.0001) when the meiotic spindle was viewed than when it was not. There was heterogeneity in this comparison. Conclusion: The presence of a birefringent meiotic spindle in human oocytes can predict a higher fertilization rate. This observation has clinical relevance mainly in countries where there is a legal limit on the number of oocytes to be fertilized. Copyright - SBRA - Sociedade Brasileira de Reprodução Assistida.

Computational linguistic systematization of a lexicon from the ibitinga embroidery industry conceptual domain

This work discusses a proposition for organizing the lexical items from the conceptual domain labeled THE EMBROIDERY INDUSTRY OF IBITINGA in terms of a natural ontology. It also aims to establish the alignment between this ontology and the bases WordNet.Pr and WordNet.Br. © 2009 IEEE.

Produtividade Científica dos docentes da Universidade Estadual Paulista, câmpus de Assis/SP

In this work, we analyzed the scientific bibliographic productivity of the Faculdade Ciências e Letras de Assis, Universidade Estadual Paulista (FCLAs-UNESP). We evaluated the scientific productivity of Professors using data retrieved from the Lattes Plataform database (Curriculum Lattes), ISI Web of Science and SCOPUS, books published, chapter of the books published and academic advisory (Master's Thesis and Ph.D. Thesis). Bibliometric evaluations of departments showed a better performance of the total number of papers (indexed in Curriculum Lattes database) by Literature Department (P < 0.05) when compared to Modern Languages Department. The Biological Sciences Department had means higher of the papers indexed by SCOPUS (P < 0.05) and ISI (P < 0.05) when compared to others departments. We also observed that the low h-indexes (P< 0,05) in the humanities areas is result of traditional mode of communication in this area of knowledge, which makes more use of books and proceedings of meetings when compared to natural sciences. These publications are not covered by ISI and SCOPUS. The graduate programs in History and Languages presented means higher of academic advisory (Master's Thesis and Ph.D. Thesis) because are graduate programs consolidated in the 1970's.

Informative Radio Models in Brazil: The All-News Networks

This study analyzes the particularities of Brazilian radio networks that adopt the all-news format and briefly presents the main national and international experiences for the implementation of the model and its conceptualization. Besides the bibliographic review, we use the multiple-case study, analyzing as the empirical objects CBN and BandNews FM networks. Also, we apply methodological procedures of systematic non-participant observation, supplemented by interviews and surveys. We conclude that the different all-news programming models and network organizations influence the processes of production, information structure, broadcasting language, and therefore the stations' profile. © 2011 Copyright Taylor and Francis Group, LLC.

Optimum-Path Forest pruning parameter estimation through Harmony Search

Pattern recognition in large amount of data has been paramount in the last decade, since that is not straightforward to design interactive and real time classification systems. Very recently, the Optimum-Path Forest classifier was proposed to overcome such limitations, together with its training set pruning algorithm, which requires a parameter that has been empirically set up to date. In this paper, we propose a Harmony Search-based algorithm that can find near optimal values for that. The experimental results have showed that our algorithm is able to find proper values for the OPF pruning algorithm parameter. © 2011 IEEE.

New trends in musical genre classification using optimum-path forest

Musical genre classification has been paramount in the last years, mainly in large multimedia datasets, in which new songs and genres can be added at every moment by anyone. In this context, we have seen the growing of musical recommendation systems, which can improve the benefits for several applications, such as social networks and collective musical libraries. In this work, we have introduced a recent machine learning technique named Optimum-Path Forest (OPF) for musical genre classification, which has been demonstrated to be similar to the state-of-the-art pattern recognition techniques, but much faster for some applications. Experiments in two public datasets were conducted against Support Vector Machines and a Bayesian classifier to show the validity of our work. In addition, we have executed an experiment using very recent hybrid feature selection techniques based on OPF to speed up feature extraction process. © 2011 International Society for Music Information Retrieval.

Subsídios para construção de estratégias de busca para revisões sistemáticas na base da dados Medline via Pubmed

Pós-graduação em Bases Gerais da Cirurgia - FMB

Análise de métodos de produção de interfaces visuais para recuperação da informação

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Informação e segurança pública: modelo de banco de dados para a gestão de informações em Moçambique

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Usabilidade na recuperação da informação: um enfoque no catálogo Athena

Pós-graduação em Ciência da Informação - FFC

Serviço de referência e informação para smartphones: análise de acesso e uso

Pós-graduação em Ciência da Informação - FFC

Ontolime: modelo de ontologia de descrição de imagens médicas

Pós-graduação em Ciência da Informação - FFC

O processo de análise de assunto na catalogação de documentos: a perspectiva sociocognitiva do catalogador em contexto de biblioteca universitária

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)