The Development of a Universal In Silico Predictor of Protein-Protein Interactions

Protein-protein interactions (PPIs) are essential for understanding the function of biological systems and have been characterized using a vast array of experimental techniques. These techniques detect only a small proportion of all PPIs and are labor intensive and time consuming. Therefore, the development of computational methods capable of predicting PPIs accelerates the pace of discovery of new interactions. This paper reports a machine learning-based prediction model, the Universal In Silico Predictor of Protein-Protein Interactions (UNISPPI), which is a decision tree model that can reliably predict PPIs for all species (including proteins from parasite-host associations) using only 20 combinations of amino acids frequencies from interacting and non-interacting proteins as learning features. UNISPPI was able to correctly classify 79.4% and 72.6% of experimentally supported interactions and non-interacting protein pairs, respectively, from an independent test set. Moreover, UNISPPI suggests that the frequencies of the amino acids asparagine, cysteine and isoleucine are important features for distinguishing between interacting and non-interacting protein pairs. We envisage that UNISPPI can be a useful tool for prioritizing interactions for experimental validation. © 2013 Valente et al.

Four-Boson Systems Close to a Universal Regime

Universal properties of weakly-bound four-boson systems near the scaling limit are discussed by considering recent results obtained from the solution of Faddeev-Yakubovsky (FY) equations, which confirm a previous conjecture on a four-body scale dependence. In the present contribution, within a discussion on our numerical results obtained for the binding energies of two consecutive tetramer states, we are analyzing the relative relevance of the two possible configurations of the four-body system. © 2013 Springer-Verlag Wien.

Range Corrections to Universal Tetramer Properties

The universal properties of weakly-bound tetramers close to the scaling limit are investigated by solving a subtracted set of Faddeev-Yakubovsky (FY) equations for identical bosons with a zero-range interaction. The solution demands a four-body scale independent of the trimer properties. Furthermore, the effect of a finite effective range is introduced in the FY equations, which we show produces results that are distinct from the scale variation. In particular range effects to two universal scaling functions for the tetramers are investigated. The correlation between successive tetramer energies corresponding to states within two Efimov trimer energies, proposed before and studied close to the unitary limit; and the correlation between the position of the four-atom recombination peaks. In this case, we found a shift in the scaling function due to the range, which can be associated to the shift of the data found for caesium atoms, with respect to zero-range calculations, due to a nonvanishing range in the actual experimental setups. © 2013 Springer-Verlag Wien.

Selecting green suppliers based on GSCM practices: Using fuzzy TOPSIS applied to a Brazilian electronics company

Due to an increased awareness and significant environmental pressures from various stakeholders, companies have begun to realize the significance of incorporating green practices into their daily activities. This paper proposes a framework using Fuzzy TOPSIS to select green suppliers for a Brazilian electronics company; our framework is built on the criteria of green supply chain management (GSCM) practices. An empirical analysis is made, and the data are collected from a set of 12 available suppliers. We use a fuzzy TOPSIS approach to rank the suppliers, and the results of the proposed framework are compared with the ranks obtained by both the geometric mean and the graded mean methods of fuzzy TOPSIS methodology. Then a Spearman rank correlation coefficient is used to find the statistical difference between the ranks obtained by the three methods. Finally, a sensitivity analysis has been performed to examine the influence of the preferences given by the decision makers for the chosen GSCM practices on the selection of green suppliers. Results indicate that the four dominant criteria are Commitment of senior management to GSCM; Product designs that reduce, reuse, recycle, or reclaim materials, components, or energy; Compliance with legal environmental requirements and auditing programs; and Product designs that avoid or reduce toxic or hazardous material use. © 2013 Elsevier B.V. All rights reserved.

Utilização de índices de vegetação para estimativa da proteção do solo pela cobertura vegetal: uma contribuição para o uso da equação universal das perdas de solo

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

A Igreja Universal e a política: o caso de Marília

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Caracterização da acessibilidade em espaços públicos: a ergonomia e o desenho universal contribuindo para a mobilidade de pessoas portadoras de necessidades especiais : estudo de casos

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Avaliação dos sistemas MTwo Retratamento e ProTaper Universal Retratamento na remoção de guta-percha e novos cimentos endodônticos dos canais radiculares

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Estudo da vulnerabilidade à erosão com a aplicação da Equação Universal de Perda de Solo na alta bacia hidrográfica do rio Jacaré Pepira, utilizando SIG/SPRING

Pós-graduação em Geociências e Meio Ambiente - IGCE

A informação mediada no discurso de Edir Macedo: um análise de editoriais da Folha Universal

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Caracterização da cobertura vegetal na equação universal de perda de solos (fator C) por meio de geotecnologias

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Triagem auditiva neonatal universal: a experiência de dois hospitais públicos no município de Campo Grande - MS, no período de janeiro de 2002 a dezembro de 2005

Pós-graduação em Pediatria - FMB