Contrasting intra versus interspecies DNA sequence variation for representatives of the Batrachospermales (Rhodophyta): Insights from a DNA barcoding approach

Sixty-five accessions of the species-rich freshwater red algal order Batrachospermales were characterized through DNA sequencing of two regions: the mitochondrial cox1 gene (664 bp), which is proposed as the DNA barcode for red algae, and the UPA (universal plastid amplicon) marker (370 bp), which has been recently identified as a universally amplifying region of the plastid genome. upgma phenograms of both markers were consistent in their species-level relationships, although levels of sequence divergence were very different. Intraspecific variation of morphologically identified accessions for the cox1 gene ranged from 0 to 67 bp (divergences were highest for the two taxa with the greatest number of accessions; Batrachospermum helminthosum and Batrachospermum macrosporum); while in contrast, the more conserved universal plastid amplicon exhibited much lower intraspecific variation (generally 0-3 bp). Comparisons to previously published mitochondrial cox2-3 spacer sequences for B. helminthosum indicated that the cox1 gene and cox2-3 spacer were characterized by similar levels of sequence divergence, and phylogeographic patterns based on these two markers were consistent. The two taxa represented by the largest numbers of specimens (B. helminthosum and B. macrosporum) have cox1 intraspecific divergence values that are substantially higher than previously reported, but no morphological differences can be discerned at this time among the intraspecific groups revealed in the analyses. DNA barcode data, which are based on a short fragment of an organellar genome, need to be interpreted in conjunction with other taxonomic characters, and additional batrachospermalean taxa need to be analyzed in detail to be able to draw generalities regarding intraspecific variation in this order. Nevertheless, these analyses reveal a number of batrachospermalean taxa worthy of more detailed DNA barcode study, and it is predicted that such research will have a substantial effect on the taxonomy of species within the Batrachospermales in the future.

Esterase patterns in species of the triatome bug Rhodnius

The aim of the present study was to analyse esterase patterns in three triatomine species of Rhodnius genus. Four loci, Est 1, Est 2, Est 3 and Est 4, were found. The corresponding enzymes were characterized as carboxylesterases (E.C. 3.1.1.1) or cholinesterases (E.C. 3.1.1.8) based on inhibitory experiments, using eserine sulphate, malathion, mercury chloride, p-chloromercuribenzoate (pCMB) and iodoacetamide. Low genetic variability was observed: Est 1, Est 2 and Est 3 were monomorphic in Rhodnius domesticus, Rhodnius robustus and Rhodnius neivai, whereas locus Est 4 was polymorphic in the first two species. The UPGMA analysis based on esterase genotypic frequencies indicated greater similarity between R. domesticus and R. robustus when compared with R. neivai. The present study expands our knowledge about genetic variability among triatomines and accords with the hypothesis that R. domesticus is a species derived from R. robustus.

Genetic data of 15 autosomal STR loci: an analysis of the Araraquara population colonization (São Paulo, Brazil)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Genetic divergence in Eucalyptus spp. clones by molecular RAPD markers

The genetic divergence in 20 Eucalyptus spp. clones was evaluated by multivariate techniques based on 167 RAPD markers, of which 155 were polymorphic and 12 monomorphic. The measures of genetic distances were obtained by the arithmetic complement of the coefficients of Jaccard and of Sorenso-Nei and Li and evaluated by the hierarchical methods of Single Linkage clustering and Unweighted Pair Group Method with Arithmetic Mean (UPGMA). Independent of the dissimilarity coefficient, the greatest divergence was found between clones 7 and 17 and the smallest between the clones 11 and 14. Clone clustering was little influenced by the applied procedure so that, adopting the same percentage of divergence, the UPGMA identified two groups less for the coefficient of Sorenso-Nei and Li. The clones evidenced considerable genetic divergence, which is partly associated to the origin of the study material. The clusters formed by the UPGMA clustering algorithm associated to the arithmetic complement of Jaccard were most consistent.

Diversidade e estrutura de taxocenoses de anfíbios anuros em uma paisagem fragmentada no centro-oeste paulista

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Estrutura de comunidades e influência da heterogeneidade ambiente na diversidade de anuros em área de pastagem no sudeste do Brasil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Divergência genética entre árvores matrizes de Guazuma ulmifolia Lam

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Avaliação da base genética de genótipos de soja resistentes ao nematóide de cisto (raça 3) por marcadores microssatélites

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Descrição morfológica e análise da variabilidade genética para caracteres de frutos, sementes e processo germinativo associado à produtividade de óleo em matrizes de Carapa guianensis Aublet., uma meliaceae da Amazônia

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Diversidade fenotípica e molecular de cultivares brasileiras de soja portadoras de gene RR

Pós-graduação em Agronomia (Genética e Melhoramento de Plantas) - FCAV

Variabilidade genética de Fusarium spp. isolados de solos e de bananeiras com sintomas do Mal-do-Panamá

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Assembléias zooplanctônicas (Cladocera, Copepoda e Rotifera) e condiçoes limnolócas no gradiente longitudinal barragem-jusante do reservatório de Itaipu, rio Paraná (Brasil, Paraguai e Argentina)

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Análise molecular e morfológica de exemplares de Trichomycterus valenciennes, 1832 da Chapada dos Guimarães (Bacia do Paraguai) e ensaio sobre o complexo de espécies Trichomycterus brasiliensis Lutken, 1874

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Estrutura trófica da comunidade de peixes de riachos da bacia do rio Itanhaém, litoral sul do estado de São Paulo, Brasil

Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)

Padrões de infecção por helmintos em comunidades de lagartos do Brasil central

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)