A first case of protease codon 35 amino acid insertion in a HIV-1 subtype B sequence detected in the Bauru region, state of São Paulo, Brazil: case report

Inserções de aminoácidos na protease têm sido raramente descritas em pacientes infectados pelo HIV. Uma destas inserções foi, recentemente, descrita no codon 35, embora seu impacto na resistência mantém-se pouco conhecido. Este trabalho apresenta um caso de uma variante viral com inserção no codon 35 da protease, descrita pela primeira vez em Bauru, São Paulo, Brasil, circulante em um homem, caucasiano, com 38 anos, o qual apresenta infecção assintomática pelo HIV desde 1997. A variante isolada mostrou uma inserção no codon 35 da protease de dois aminoácidos: uma treonina e um ácido aspártico, resultando na sequência de aminoácidos E35E_TD.

Characterization and transcriptional analysis of the promoter region of the Duffy blood group, chemokine receptor (DARC) gene in cattle

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES)

Effects of altered epididymal sperm transit time on sperm quality

The epididymal sperm transit time seems to have an important role in the process of sperm maturation, and it seems that alterations to the transit can harm the process. The aim of the present work was to evaluate the influence of altered sperm transit time through the epididymis on sperm parameters and fertility of rats, as well as the role of testosterone in the alterations. Sprague-Dawley adult male rats were randomly assigned to four different groups and were treated for 12 days: (i) 10 mu g/rat/day DES, to accelerate the transit; (ii) 6.25 mg/kg/day guanethidine sulphate, to delay the transit; (iii) same treatment as group 1, plus androgen supplementation; (iv) control animals received the vehicles. Guanethidine treatment delayed the sperm transit time through the epididymal cauda, provoking increased sperm reserves in this region. Animals exposed to DES showed an acceleration of sperm transit time in the epididymis, and consequently decreased sperm density in both epididymal regions, the caput-corpus and cauda, and diminished sperm motility. In both cases sperm production was not altered. Testosterone supplementation was able to restore the transit time to values close to normality, as they were higher than in the control rats. The same occurred in relation to sperm motility. Rats exposed to DES presented lower fertility after in utero artificial insemination using sperm collected from the proximal cauda epididymis. Therefore, it was concluded that the acceleration of rat sperm transit time appeared to harm normal sperm maturation, thus decreasing sperm quality and fertility capacity, in an androgen-dependent way.

Intraspecific and interspecific pre-adult competition on the neotropical region colonizer Zaprionus indianus (Diptera: Drosophilidae) under laboratory conditions

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Suppressing Fermi acceleration in a two-dimensional non-integrable time-dependent oval-shaped billiard with inelastic collisions

Some dynamical properties of a classical particle confined inside a closed region with an oval-shaped boundary are studied. We have considered both the static and time-dependent boundaries. For the static case, the condition that destroys the invariant spanning curves in the phase space was obtained. For the time-dependent perturbation, two situations were considered: (i) non-dissipative and (ii) dissipative. For the non-dissipative case, our results show that Fermi acceleration is observed. When dissipation, via inelastic collisions, is introduced Fermi acceleration is suppressed. The behaviour of the average velocity for both the dissipative as well as the non-dissipative dynamics is described using the scaling approach. (C) 2009 Elsevier B.V. All rights reserved.

Giardia survey in live-trapped small domestic and wild mammals in four regions in the southwest region of the State of São Paulo, Brazil

For the first time, a survey on Giardia in the live-trapped small domestic and wild mammals was perfomed in four regions of state of the São Paulo, Brazil, with special attention to the parasitism of Rattus rattus rattus by Giardia. This species was found infected in all studied sites: Botucatu (15.4%), Conchas (28.5%), Itaporanga (38.7%) and São Roque (100 %). Two new hosts and their frequency of infection were described for Giardia in Nectomys squamipes, an aquatic rodent and in Bolomys lasiurus, a forest rodent (100 % and 14.3 %, respectively). Both G. muris and G. duodenalis groups were found in scrapings of intestinal mucosa of those rodents. Mixed infection was observed in some animals. It is important to emphasize the infection by G. duodenalis in the black rat as this species lives as a comensal with man and in N. squamipes as it may contaminate small streams used for domestic consumption. Therefore, further investigation will be necessary to elucidate the potential of these rodents to act as reservoirs of Giardia for man.

Time analysis for temporary gravitational capture - Stable orbits

In a previous work, Vieira Neto & Winter (2001) numerically explored the capture times of particles as temporary satellites of Uranus. The study was made in the framework of the spatial, circular, restricted three-body problem. Regions of the initial condition space whose trajectories are apparently stable were determined. The criterion adopted was that the trajectories do not escape from the planet during an integration of 10(5) years. These regions occur for a wide range of orbital initial inclinations (i). In the present work it is studied the reason for the existence of such stable regions. The stability of the planar retrograde trajectories is due to a family of simple periodic orbits and the associated quasi-periodic orbits that oscillate around them. These planar stable orbits had already been studied (Henon 1970; Huang & Innanen 1983). Their results are reviewed using Poincare surface of sections. The stable non-planar retrograde trajectories, 110 degrees less than or equal to i < 180, are found to be tridimensional quasi-periodic orbits around the same family of periodic orbits found for the planar case (i = 180 degrees). It was not found any periodic orbit out of the plane associated to such quasi-periodic orbits. The largest region of stable prograde trajectories occurs at i = 60 degrees. Trajectories in such region are found to behave as quasi-periodic orbits evolving similarly to the stable retrograde trajectories that occurs at i = 120 degrees.

Fecundity of the crab Callinectes ornatus Ordway, 1863 (Decapoda, Brachyura, Portunidae) from the Ubatuba region, São Paulo, Brazil

The objective of the present study was to characterize the fecundity of Callinectes ornatus from the northern coast of São Paulo, Brazil. To study the fecundity and its relationships to size, brood weight, and egg size, the ovigerous females were collected at 2-month intervals for two consecutive years (January, 1991 to November, 1992) in the Ubatuba region using a fishing boat equipped with an otter-trawl type of net. After collecting, the animals were screened, bagged, labeled, and stored frozen. Only data from 38 females carrying early stage eggs were considered. In the laboratory, the specimens were thawed at room temperature, the pleopod structure with the egg mass was removed and the eggs were carefully removed from the pleopods. The samples were then fixed in 10% formalin and stored in 70% ethanol, until the time for processing. Processing followed the method of Hines (1982, 1988). Following the frequency determination of carapace width and fecundity, mean egg number, mean volume and mean dry weight of brooded egg mass were determined for each class obtained. Data were analyzed by regressions of log-log transformations for allometric plots (Y = aX(b)) of reproductive variables versus carapace width. Carapace width was one of the main factors for the determination of fecundity, which ranged 171 570 +/- 94 634 eggs, with females of the same size class presenting a wide amplitude of variation. This supports the hypothesis that portunid females present staggered spawning, possibly presenting more than one period of reproduction within one year. The present species showed lower fecundity than the remaining portunids studied, but they did show a rapid and efficient embryonic development, presumably capable of assuring reproductive success.

Coastal Marine Mapping as an Ecosystem Based Management - the case study of the Baixada Santista Region - São Paulo, Brazil

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

In Situ and Simultaneous UV-vis/SAXS and UV-vis/XAFS Time-Resolved Monitoring of ZnO Quantum Dots Formation and Growth

Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP)

Atmospheric cosmic rays in the South Atlantic anomaly region

To study the production and propagation of fast secondaries particles in the atmosphere, data collected during eleven quiet-time balloon flights are analysed. Comparisons of these data with those obtained in different geomagnetic rigidity regions permit to estimate the contributions of the proton and electron components in the measured intensities. Derivations of this last component in the «upward» and «downward» moving electrons fluxes indicate that in the anomaly region a fraction of these particles, produced by the primary protons, are leaving the atmosphere and will not return to the Earth. © 1991 Società Italiana di Fisica.

Numerical study of the coupled time-dependent Gross-Pitaevskii equation: Application to Bose-Einstein condensation

The Bose-Einstein condensate of several types of trapped bosons at ultralow temperature was described using the coupled time dependent Gross-Pitaevskii equation. Both the stationary and time evolution problems were analyzed using this approach. The ground state stationary wave functions were found to be sharply peaked near the origin for attractive interatomic interaction for larger nonlinearity while for a repulsive interatomic interaction the wave function extends over a larger region of space.

Electromagnetic form factor of the pion in the space- and time-like regions within the front-form dynamics

The pion electromagnetic form factor is calculated in the space- and time-like regions from -10 (GeV/c)2 up to 10 (GeV/c)2, within a front-form model. The dressed photon vertex where a photon decays in a quark-antiquark pair is depicted generalizing the vector meson dominance ansatz, by means of the vector meson vertex functions. An important feature of our model is the description of the on-mass-shell vertex functions in the valence sector, for the pion and the vector mesons, through the front-form wave functions obtained within a realistic quark model. The theoretical results show an excellent agreement with the data in the space-like region, while in the time-like region the description is quite encouraging. © 2003 Elsevier B.V. All rights reserved.

Foraging activity of Protopolybia exigua (Hymenoptera, Vespidae) in different phases of the colony cycle, at an area in the region of the Médio São Francisco River, Bahia, Brazil

In this work, the foraging activity of Protopolybia exigua (de Saussure) was studied, aiming to verify the amplitude of the foraging time, the relation between the physical factors of weather (temperature, relative air humidity, luminosity and wind speed) and the daily activity of searching for resources, as well as to analyze the influence of the colony development phases and the number of individuals (adults and immatures) engaged in such activity. The study was carried out in two areas of the city of Bom Jesus da Lapa, Bahia, Brazil, during the period from January to June 2006, when the observation of 12 colonies of P. exigua was performed. The results revealed this species presented an amplitude of activity of almost 13 hours. There was an average of 44.4 nest exits and 37.6 returns a day by the nest workers and the Returns with Resources Index for this species was 93.5%. The foraging activity increased as of 10:01, and became more intense, with the peak from 1:01 p.m. to 4:00 p.m., when the highest temperatures (°C) and the lowest values of relative air humidity (%) were observed. The colonies that had a larger number of larvae presented a higher average number of trips to the field per hour (10.94) and the number of females in the colony tends to induce foraging activity. There were no differences between the numbers of nest exits by the workers regarding the three phases of colony development.

Myotoxic phospholipases A2 isolated from Bothrops brazili snake venom and synthetic peptides derived from their C-terminal region: Cytotoxic effect on microorganism and tumor cells

This paper reports the purification and biochemical/pharmacological characterization of two myotoxic phospholipases A2 (PLA2s) from Bothrops brazili venom, a native snake from Brazil. Both myotoxins (MTX-I and II) were purified by a single chromatographic step on a CM-Sepharose ion-exchange column up to a high purity level, showing Mr ∼ 14,000 for the monomer and 28,000 Da for the dimer. The N-terminal and internal peptide amino acid sequences showed similarity with other myotoxic PLA2s from snake venoms, MTX-I belonging to Asp49 PLA2 class, enzymatically active, and MTX-II to Lys49 PLA2s, catalytically inactive. Treatment of MTX-I with BPB and EDTA reduced drastically its PLA2 and anticoagulant activities, corroborating the importance of residue His48 and Ca2+ ions for the enzymatic catalysis. Both PLA2s induced myotoxic activity and dose-time dependent edema similar to other isolated snake venom toxins from Bothrops and Crotalus genus. The results also demonstrated that MTXs and cationic synthetic peptides derived from their 115-129 C-terminal region displayed cytotoxic activity on human T-cell leukemia (JURKAT) lines and microbicidal effects against Escherichia coli, Candida albicans and Leishmania sp. Thus, these PLA2 proteins and C-terminal synthetic peptides present multifunctional properties that might be of interest in the development of therapeutic strategies against parasites, bacteria and cancer. © 2008 Elsevier Inc. All rights reserved.